Array 1 39439-41972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRHD010000012.1 Porphyromonas levii strain DD11 JD2_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 39439 30 100.0 36 .............................. TCTTCTGCACCCCGTCTAAGTATCAAGAAATCTTCG 39505 30 100.0 36 .............................. TGGTCAAGGAGTATATCGAGAGCCTTGGCAGCGATG 39571 30 100.0 36 .............................. AAGAAAGCGAAGCGATTCGAGATAGTGCAAAGGGAG 39637 30 100.0 36 .............................. CGAATAGCTGGGGAGATGTCCATCGACGGCAAACCG 39703 30 100.0 36 .............................. TCCGCATGAGCCTCGCAAAGCTCTACAAAGTTTTCC 39769 30 100.0 37 .............................. TATTTTTTGCTAAGGTTTATTTTATGTATGTTTGTAG 39836 30 100.0 36 .............................. TCTAACGGCAAAGCCAAAAGAGCACCTGCAGCTTAT 39902 30 100.0 35 .............................. CTTATTCTTAGCGAATATGCCGTCCACCTCTCCAC 39967 30 100.0 37 .............................. AAGGAGGGATTTTGGATTTGGACTAAAACCCGTATTC 40034 30 100.0 36 .............................. CTGTTGTGGTCGCGTTGAAACCTCCCTTGATGAGGT 40100 30 100.0 35 .............................. CTCAATAGCATAGGTGGGAAGATAGCTGCGGTATT 40165 30 100.0 37 .............................. TATCTGCTGCAGTCTTAGATCTTCGTAAGAGGTTTCA 40232 30 100.0 37 .............................. TACCTCGCTCAAGACGTAGAGCTACAACGATTAAAAA 40299 30 100.0 37 .............................. AACCAGAAAAATGAAAGTGTCCGCCTTGCAAAGAAGC 40366 30 100.0 34 .............................. AGAAAAAGGACAAACCCAAGGATTCGGACAACAA 40430 30 100.0 36 .............................. TTTGCAACTTCAAGGGCGAAAAGGAAAGGACAACCA 40496 30 100.0 36 .............................. TTTGGATATTTTCAGGTGACGACTTCGATTTAAAAG 40562 30 100.0 36 .............................. GTAGAAATACTAATTAATATCAATGGGAATGCGGCA 40628 30 100.0 37 .............................. CATCATTGAGGGTAATAAATCGATCATACTTAGGATC 40695 30 100.0 35 .............................. ATGTTTTTATCATATTCTCAACAAAATGGTTATAC 40760 30 100.0 35 .............................. TTAATATCAATGGGAATGCGGCAGAAGAGAGTAAG 40825 30 100.0 36 .............................. TTGAAAAACCTACCAATCGTCTTCTTGACAATTCTT 40891 30 100.0 34 .............................. GAGGCGGTAGGCACATGGATCATCTGGGGGCAGA 40955 30 100.0 36 .............................. TTGACTTTATCCGCTGTATCGTGAACTCGCTCAATG 41021 30 100.0 35 .............................. GCGAAGAAAGACAGTTGGACCGACTTGAAAAGAGA 41086 30 100.0 35 .............................. GTCTATACCAAATTGTTCCCTAACCTTGTCGGTTA 41151 30 100.0 37 .............................. AGGTTGTAATGCTGTCTACTTCATGGATGGCTGGGAA 41218 30 100.0 35 .............................. TTTTCGTTGTTAATAAGATAAGAGTTGACAGAATT 41283 30 96.7 34 ................G............. TAGTATAGAGTAGCTTTGCCCACTCCTTTTTCTG 41347 30 100.0 37 .............................. GCGAAGAGAGCACTAAGCTGTACGGAGAGCTAACAGA 41414 30 100.0 36 .............................. AAAGACAGTAGAGAAGAGGTGGTAGACCTATCGAAT 41480 30 100.0 36 .............................. CTCGAGTGCTGGCTCATCATTGATAGTGCCTTTCAT 41546 30 100.0 37 .............................. AATAAATCTAGGTATTTTACAGTTAAAGAAAGTTAAA 41613 30 100.0 34 .............................. ATGGATACGAGGACGGTATTACACTACCACCGAT 41677 30 100.0 37 .............................. AACAGAATATTCTTGGTGCAACTCAAAACGGATTAGA 41744 30 100.0 37 .............................. TCGTAGCATTCCCAGAAACACAACCATCCCCAGAAAG 41811 30 100.0 37 .............................. CCTTTACATACTTCGAGTATACAGCCTGCTCGTAGTT 41878 30 100.0 35 .............................. AGAGCGAAGTGCCGTAACATACAAACTCACTAAAC 41943 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 39 30 99.9 36 CTGTTAATCGTACCATACTGGAATTGAAAC # Left flank : ATAATATTTTCATCAAGACAGGAGGGGTGGTTAGACAAAGAGATTATGGGAATTGAGAAAGCATCTACCGATAATTTCTTGTGAGTATTTTCCTATTTCGAATTACACGCCAATGCGTAAGGATGATAGAGATCATAGACATTTCGAAAACTAATAATATCTTTGTTTGGGTCGCATCAGACTAATAGATGTAAATCATGGTTAGCATTTTAGTGCTCTGTAGGACAGTTCCCATATCATACAATATGTGGTGCGCATAAATTGCTCTATAATGATGGGTTATTCTCTAAATGTCTGTCGATACTGGTGTTCACTAGTATTTTAGACGGTCTATGAAAATAGGAGGAATATTATGTTATTGATAATCAGTAGAATGGACTGTTGTCGTAGGTGCACTCTTATTATACGATTAGGGTTCGACGACATCTTCCAAGCAAAAAGTGCCAAATAAATTTTCTAACAGACTTGTAACCAATGATATATTATAGTAAATTTGACGG # Right flank : CTATTCGTCATCATCACGCACCTTATGTTCGATAGTTCTGAGAGATGGGGGGATTTGAGAGAGGGGGAGTGGTCGAATTCTCTAGCGCGAGCGGGGAAATTTATCTCTAGGAATAAAAATATTTATTCCTAGAGATAAATGTTTTTATTTGTGCAGAAAAGTAAATTTATTCCTAGGGATAAATTTGATGGTGAAGTAGACTATTTTTTTGCTGCTGTATATCAAGCGCTTGGGTGAAGGGTATTGCGCTGTAAATTGGTATATTTGTACGCTAATGTATAGGTGTGTATGAAGCTAAGGACTGAGGATTTAGTAAAGAAATATAAGAGTCGTACGGTGGTGAACCATGTCTCTATCGAGGTGGAGCAAGGTGAGATCGTGGGGCTTCTGGGGCCTAATGGCGCTGGGAAGACGACTACTTTCTATATGACGGTGGGGTTGGTACAACCCAATAATGGTCGGATTTTCTTGGATGATCGAGAGATTACCAAGGAGCCAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTAATCGTACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //