Array 1 1414-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAJC010000001.1 Legionella sp. W10-070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1413 28 100.0 32 ............................ TATTTAAAATCAATGTCGCTGGATAAAGAGTA 1353 28 100.0 32 ............................ TGACATGCTGGCTGAATACACCAAGAACATGA 1293 28 100.0 32 ............................ TTGTTCAGCCATTGCTTTTGAGGCAGCATAAT 1233 28 100.0 32 ............................ AAAGTTGACGGCATGTTTTGCGGGCTAAAAAC 1173 28 100.0 32 ............................ ATTCGCAAGAACTTCTTTAGCTACCTCACAAT 1113 28 100.0 32 ............................ TCCCTCCGGATTTAAATTAGGTGGGGTTGTTA 1053 28 100.0 32 ............................ GTGCGACTGATGAGCCATACTTGGATGAAATG 993 28 100.0 33 ............................ CCTGCGGTTCTTGCTCAAAATAACTGGCGCTTT 932 28 100.0 33 ............................ TTTTACCAGTGATGATGAACGCATAGCGGCAGC 871 28 100.0 32 ............................ TTCCAGGCAACTGCAAGCACAAGTTTCTTCAT 811 28 100.0 32 ............................ TATTGGCCGCATGCAGAGGAGCATAGTAAAGG 751 28 100.0 32 ............................ TCGCTGCGTGATAACTTTATGAAAGAACCGGC 691 28 100.0 32 ............................ TCTTCAATAATTCGTTTAAGCCTGCCAGCTAA 631 28 100.0 32 ............................ GCAACAGGAGCGCTTGGTAATGGAGCTGCAAA 571 28 100.0 32 ............................ CATGTAATAAAGTTTGTTGACAGAGAAGTCAT 511 28 100.0 32 ............................ ATGTGTACCCGCTGCTTACCAAGTCCGTAACG 451 28 100.0 32 ............................ ATCTTCATCAAGTTAAAGGGCCTGCCGTGGGC 391 28 100.0 32 ............................ AGATGATTCCCACTATTTACGATACCGAGCGC 331 28 100.0 32 ............................ TTCAAATCTTTTGGCTCTATACGCGTTTCAAC 271 28 100.0 32 ............................ TACAAAAGTAGATGGCATGTTTTGCGGACTAA 211 28 100.0 32 ............................ ATACGAAAAGAAGAGCAGCTCGAAGAAACCGC 151 28 100.0 32 ............................ TTTGGCACTGGCGAAAGCGCAGCAAGATATTT 91 28 100.0 32 ............................ ATGTGTACCCGCTGCTTACCAAGTCCGTAACG 31 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGTTTTTGCCAGTACCTGCCTACGCTAAATTTCGTATGGTTTCACGTAAACAACCAACAATGAGTCAATCAAAATTGAGGCGGTTAATTAAACGTAGCTCTATGACGGAAGGTGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAAGGTCTGGATAGCCCTTATATTGATTTGGTGAGCGGATCAAACGGGCAAAGGCACCGACGCTATATTGAGTTTGGCGAATTACTCGACGAGCCAACTCCTGGTAAGTTTGATCTGTTCGGCTTATCCAAAACCGCTACTGTTCCTTGGTTTGATTAAATAAGAGAGCATGACAAGTCTGTTGAATTCAATAGAGACTTTAAAAGAGGTTTCCGATCTAACTACCAATAATTTTAGCTCTTTAAAAATTTGTTATAAAATCAAATGGTTATAAGTTGGCTGTAAAACATTGGATAAATTGATGTTTTTCAGCTAACTTTTTGTTGTAACTATTTTTTTATGGTTTATATTACA # Right flank : AATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 127813-126404 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAJC010000004.1 Legionella sp. W10-070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 127812 28 100.0 32 ............................ ATACGAAAAGAAGAGCAGCTCGAAGAAACCGC 127752 28 100.0 32 ............................ TTGCATTGTCTGCCATCTTCCCAAAACAGCCT 127692 28 100.0 32 ............................ ACTCGATAAATTTAGACGCTTTCGGCAAGTAT 127632 28 100.0 32 ............................ CCAGGCTGGAAATACGTTAAGCCTTCGTCTAA 127572 28 100.0 32 ............................ AATTACCGAACACTGAAACGCAATCTGATACA 127512 28 100.0 32 ............................ AGAAAGTAAACTCAGAAGTCTTTGGTCGCGGC 127452 28 100.0 32 ............................ ACACCGAAATTTCAAAAGAACCTGTTTGCGGT 127392 28 100.0 32 ............................ CAAAGCCAGCTCCAGAGCTAATACTTGCTTTT 127332 28 100.0 32 ............................ TTTTGGAATAAAGCTGACAGGTATATTCTATA 127272 28 100.0 32 ............................ TGCTCAAGTCTTTCTTGCAGCGCTTCCATGTT 127212 28 100.0 32 ............................ TCGATGAGCAAAATTCGAAAAATCGAAAGTTT 127152 28 100.0 32 ............................ CTGTAATGTCTATCCTGTCGTTAACCGCCAAG 127092 28 100.0 32 ............................ TATGGTCAATACTCAAAAAATGAGGCTTATGA 127032 28 100.0 32 ............................ ATTACCGTGTCGTCGTTAAGCGTGTAATTTTG 126972 28 100.0 32 ............................ TGCTGGAAATGGAGCGCCTGGGAAAACGCGCC 126912 28 100.0 32 ............................ AGTGAGGAATGTAAGCGAATCCTGTTTGACTT 126852 28 100.0 32 ............................ TGCTTCACATGACTATTTTCAGGCTCACTTTC 126792 28 100.0 33 ............................ CATCAACATTCATCTGAAAGACGCGCAGCCAAT 126731 28 100.0 32 ............................ TATGCCGTTTGTAAGGCTTACTGATGCGCAAA 126671 28 96.4 33 ...........C................ GTTCGTGTCCGCTCTTAATGATACATGCCCTTC 126610 28 96.4 32 ...........C................ ATTGCCAATGAGCCGCTCATTCGCAATCCGAT 126550 28 96.4 32 ...........C................ AGGCGAAAACCCATGGAATTAGAATACTGGGG 126490 28 96.4 32 ...........C................ AATCCCTGAGCGTTACAACGGCATGTTTACTT 126430 27 89.3 0 ...........C...........T-... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.0 32 GTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : GGACTA # Right flank : CTTCGTTTTCTAAGGCGTGTTTACAATTCATTCCCACGGTCTACGTGCCGCGACTTGTTCGCGGCATCCAGAAGATGGTCAAATTAAAGATGAACTTGATTAACTTACCTGTCTAATTGATTGATAAGAGCAAACTCATAATATGACGATTCTAACATCAAAATAAAAACGAGTTTGCTATGGCTAGACTGATGCTCAATGACGAGCTTTGGTCAAAGCTAAAGGAGATCATGCTACAACATCGGATTTATAACAATGCTGGCAATGGCCTGCTCATATCGTTGGTTACCCATGTAATCAGTGCTTCTTAAGTGATAACATTACGCTGAGTCCAACGCTCTAACAAGGAATGGAAATGAAAGCATTTTATGTCTATATTATGGCAAGCAAGCGTAATGGCACATTATACGCGGGTTCAACGTCTGATTTAATTAAGCGCGTCTGGGAGCATAAAAATAACATGATTCCAGGATTTACAGCCAGGTACAATGTACACAACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //