Array 1 81-293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMQ010000181.1 Streptomyces sp. SP18CM02 4_GTGTCGGA-GCTTGCGC-k141_201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 81 30 93.3 31 T............................C TGGCCGACGGCGTAGAGCTCCCGTAGCTGTC 142 30 86.7 31 ......................A..A..AC CCGACACCTCGCTCTACTCCGGGTTGCGGTG 203 30 100.0 31 .............................. ATGGGTTAAGGATCCGCGCGGGGCGTTTCCG 264 30 93.3 0 ......A......................G | ========== ====== ====== ====== ============================== =============================== ================== 4 30 93.3 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : GCCCCTCGTTGTAGGAGGCGGCGACCCCGGAGAAGCGCGCGCGGGCGCACCCCGTAGCCCTACACGTCGCGCTTCACAGCT # Right flank : TGCGGCCGTCCTCGGTCTCCAGCAC # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 490-893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMQ010000257.1 Streptomyces sp. SP18CM02 4_GTGTCGGA-GCTTGCGC-k141_281, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 490 30 96.7 31 .............................C ATCTCAACGAACCCAAGGAGTAACCGTGATC 551 30 100.0 31 .............................. ACCGCCAGCAGGACCGCGCCGTACGCGCGTA 612 30 100.0 31 .............................. GCACGACGACCACCGGGACCATCTGGTTCGC 673 30 100.0 31 .............................. GCACGACGACCACCGGGACCATCTGGTTCGC 734 30 96.7 31 .............................C AGGACATGCCGGTCATGGCGGCGAACGCCAA 795 29 93.3 40 .....................-.......G GTAACGATCGTCCTCGCCGTCCTCGCCGTCCTCGGCGCGC 864 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ======================================== ================== 7 30 97.6 33 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CCCACATCCCCGGAGAGGCAGAAGCCCGCTCACCGAGCACCGCCAAACCCACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCGCGCACACACCACCGGCAGCAACGACACCACCGCACCCACCCCAGAAGAAATCGCCGCCGTCAAAGCCCATATCGCCAACCTCCGCAACCTCCTCAAACCCGCCTGACCCCCATTCGACAGCCCGCCGCTGGGCTGGGCAGGCACGCCACACCCCCGGGGGCCAACCCCTCGGAAGGCAGAACCGCGCCCCTTCCACCAAAGCCCGGACGATGAGAACAGCAGTGGGCAGAATGACATCAGCCGAACCACACGCATGACCCTTTTGTGAAGGAAGACGAGATATGCCGGTTTCTCAACAACACAGTAAAAACCGCCTCCCCGTCACCTAAACCCGCAGGTCACGGACTG # Right flank : GTAACGATCGTCCTCGCCGTCCTCGCCGTCCTCGGCGCGCGTGGTCCCCGCGCACGCGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8-342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMQ010000263.1 Streptomyces sp. SP18CM02 4_GTGTCGGA-GCTTGCGC-k141_287, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 8 30 93.3 31 ...........A.................A GCGCGTCGCCGTACATGGCCAGGATGACCGC 69 30 100.0 31 .............................. CGGTCACGGGGGGTGTGGTGGTGTCGGGGAT 130 30 93.3 31 ................G............T GGACCTGCCTGGCGGGGTGGGGCGGGAGTGG 191 30 96.7 31 .............C................ AGGTCACGGGGGGTGTGCTCCTGTCGGGGAT 252 30 96.7 31 .............................A GGTCCTGCCAGTCGGTGAGGGGCCGGACTTG 313 30 73.3 0 .....................TCAACAG.G | ========== ====== ====== ====== ============================== =============================== ================== 6 30 92.2 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : AGCAGGGG # Right flank : CGAA # Questionable array : NO Score: 3.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [3.3-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65762-65060 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMQ010000278.1 Streptomyces sp. SP18CM02 4_GTGTCGGA-GCTTGCGC-k141_304, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 65761 30 100.0 31 .............................. GTGCCGCCTTGAGCCCGAGAGCTTTCCCTCG 65700 30 96.7 31 .............................G ACCCCGACGACACCCTCAACCACACAAGAGA 65639 30 93.3 31 ............................GT ACACGTCGCCGCCGACGAGGTCACCGCCGCT 65578 30 100.0 31 .............................. CGGCGTCCATGTCCCCGTTGGCGCTGGCCGC 65517 30 96.7 31 .............................G TGGTGCCGTACCCGGTCCACCCGGTGCCGAA 65456 30 100.0 31 .............................. ACTTCATGACCTCGCGGACGGTGGCGCCCTC 65395 30 93.3 31 ..G..........................G ACGGGTTGTCGGCGAGCTTGAAATGCCATGC 65334 30 90.0 31 ..G........T.................G GGCGGCAGTTGGGCGCCTCGGTCGCCATGAC 65273 30 86.7 31 ..G.........AT...............T CGTGGGTCGGCCAGATGTCCATGGCAGGCGT 65212 30 90.0 31 C.G..........................A CGCTCACCATCGGGGAAATGGCCCGGCATCT 65151 30 83.3 31 ..G.........AT...........C...G GCGGCAGTGATCGGCGTACCTGTACGACGGT 65090 30 73.3 0 ..G........C.GG......C....TT.G | T [65072] ========== ====== ====== ====== ============================== =============================== ================== 12 30 91.9 31 GTAGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : GCGTCGGGCGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTGATGGACGCCCTCGGGGCCTGACGACGGGCTTCGCTCACTGCTTCCTGGCCACTCCATGGCAGGGAATGACGAGTTCCTTGAGCCGCCGAACCTCCGGTCAGGAGTCGCGTGAACACGAGCCCTGGGGGCGAGGGCCGAGTCGGCCGGCTCAAGGCACCGGTAGCGGTCGTCGTGGTCGAAGACCTCACCGACGTCGGCCACCAACGTGTTCGCACAGCGAGCCCAGAACACAACGCCCCTGGCCGACACCTGCGAAAGGCCGGGCCGCTTCTCTTCCACCGAAGCCGGGCCGACGAGGTCGACGGCGGGCAGAATGGCATCAGCCAAGCCACGCGCATGAACTCTTTGCGACAGAAGGTTGGATATGCCGGTTTCTCAAGAAGTGAGTAAAAACCGCCACCCCGCTACCTAAAACCCCAGGTCACGAAGG # Right flank : CGGGTGTTCGCGGTACCGCTTCGGCCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGGCACCGGGCCGCCCCGCCCACCCCACCCCGCTCTCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTTCTCCACCAAGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCTTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAAGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCC # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69328-69047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMQ010000278.1 Streptomyces sp. SP18CM02 4_GTGTCGGA-GCTTGCGC-k141_304, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 69327 30 96.7 40 .............................G GTAACGATCGTCCTCGCCGTCCTCGCCGTCCTCGGCGCGC 69257 30 100.0 31 .............................. GATCCGTTGCGGAGATGCTGACCGAGGACTG 69196 30 100.0 31 .............................. ATGGGTTAAGGATCCGCGCGGGGCGTTTCCG 69135 30 93.3 31 ......A......................G TGCGGCCGTCCTCGGTCTCCAGCACGATCGG 69074 28 93.3 0 .....................-...-.... | ========== ====== ====== ====== ============================== ======================================== ================== 5 30 96.7 34 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CGGTAACGATCGTCCTCGCCGTCCTCGCCGTCCTCGGCGCG # Right flank : CGCACCATCGTTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGAACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGCAGCCGCCCTCCGCGCACGCCCGACACAACAGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGGTCGACAGATCGGGGCTCATCCAGCGCCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCATGCGCACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGACCGTCCGCACCGGCCGACAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATGACCTCG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20347-21047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMQ010000286.1 Streptomyces sp. SP18CM02 4_GTGTCGGA-GCTTGCGC-k141_318, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 20347 30 100.0 31 .............................. GGAGACCACGGCCGAGCGCGTCGCCATCGCC 20408 30 96.7 31 .............................G TCACGGTCAGCTACCCGCACGCGAAGCTGTC 20469 30 96.7 31 .............................G CCGCGAGGTCGGTGTACTGCGGGGTGGGGTT 20530 30 96.7 31 .............................G CCAGCTCGACCAGGATCAGCCGCTCGACCAG 20591 30 100.0 31 .............................. AGTCAAGCAGCGGTCCGCCTTGCCCAGGACG 20652 30 93.3 31 ..................A..........T GTGCGACATTAATAACGGGATCTTGCTCGGA 20713 30 96.7 31 .....................A........ GTGCCGAGGCCGGCGTGCGCTGTGATCTCGA 20774 30 96.7 31 ............................T. CCGGCTCGTCCAGCAGCTCGTGGTAGCAGGG 20835 30 93.3 31 ...........A.................A GCGCGTCGCCGTACATGGCCAGGATGACCGC 20896 30 100.0 31 .............................. AGGTCACGGGGGTTGTGCTCCTGTCGGGGAT 20957 30 96.7 31 .............................A GGTCCTGCCAGTCGGTGAGGGGCCGGACTTG 21018 30 73.3 0 .....................TCAACAG.G | ========== ====== ====== ====== ============================== =============================== ================== 12 30 95.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : GTGTACTACCCGAACTGGGCAACCGCCGAACCGGGCGAGCACGTGGCCGACATCGCCATCCCCTTCCACACCGGCTCGACACCCGACCCCTGAAAACCAACCGACGACGGGCGACACACACCGCAGGCTGCAACCGCCGACCTGCGCAAGCACCTCGGGAGACCGCCATACCAGCCCCGAAGGAATAGCCGCACCCCAAGCGCACACCATCAGCCTCCGCCACTCCCCTCAAACCGTCGAACCCGCCGAACCCGCCGAACCCCAACCACGAAGCCCCTCCCGAAACGGAGTAGGCACACCGCACACCGGGGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGGTGGCGGGCAGAATGGCATCAGCCGAATCACCCCTGTGGCCACTTTGCCCCGGAGAGCGAGATATGCCGGTTTCTCAACAAGTTAGTAAGAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : GCGAATGGTCGCGCGGCTCGCACCGCTGCCTGGACGAGGAACAGCCCAACCGGTCAGTACGTTTGGTCGTCTCCATCGTCATCCCTTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGCGATGTGAAAGCTGTGGTTGCCGGGGTGGTCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGCGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACACGGTGGCCACCCGCACTCGTCGCCCACAGGAACCACAGACTCACGGGCGGTTCGGTCTCCGCGGTCCACAGGCGGGACGCGTGCTCGGCGGTCTCGTCATGCTCGCCCAACTCGCATAAGACATAGGGCTTGTCTTCGAGGAGGTCTTCGGCGTCGTCGGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGTCGTGCGGGAGGTTGGTGATGGCGGTGCATTGCAGCAC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24537-24810 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMQ010000286.1 Streptomyces sp. SP18CM02 4_GTGTCGGA-GCTTGCGC-k141_318, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 24537 30 100.0 31 .............................. CCGACACGATAGAGCTGCGCCGTTTCAGCCA 24598 30 100.0 31 .............................. TCGTCGTGCGGCCCGACGCCGACGGCAGCCT 24659 30 96.7 31 .............................G TTCGGGTTCCCTCGGTCTCCAGCACGATCGG 24720 30 96.7 31 .............................G ACGGGCTGATCGATACCGCCCCGCGCCGCCA 24781 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 98.7 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CTACGGGGCGCCCGCAGTCGAAGGCCGGGAGTGGTGGCGCGAGAGCCTGGATACGCCGCCGGAAAGGTCTCGCACCTTCTCCTACTCCGAACTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGCTGGCGGATGCCCTCTCACGGGCTCTCCTGGCCGGGCGGCCCGAGGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTAGGGGAGCGTCAGCCCTTCCCGGACTCGCCGGTCTACGCCGTGATGCTGGCCGACCTCCCGCTTGACGAGAGCCACGGAAGGTAGAGCCGCGCCTCTCCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACCTGTGACCACTTTGCCCCGAAGAGCGAGATATGCCGGTTTCTCAACAAGTTAGTAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : AGGTCGACGCACTGGAAGTAGCTGGGGTACGTCGTGGCCCCCAGCACGCGGGTTCCCCCGCCACAGCGGACGGCCACAGGCAGGGCAGGCCCCGCCGTACGCGGTGGAGGCTGCCCCTCGCCGCCGCCTACGAACGGGACCGGCGGTCGCCCGTACGTCGCCGCGCCCAGCGGACTACGTCGCAGGTACCGGTTGGCCACCGTCTTCCGCCTGATACGCCCCCGGGGCCCGCTGGCTAGCGTCGTCCTCATGCGTATCGGACTGCTCGGCACCGGAAATGTCGCCCGCGCCCTGGCCCACGGCTGGCGTGCCGCAGGGCATGACGTCCTCCTCGGATCGCGCCACCCGCAGGAGCGGGGTGACCTCGGTCTGCCCGTCGCGGGGCTCGGCGAGACCGCCGCTCGCGCGGACGTCCTGGTCAACGCCACCCCCGGTGGCGTCTCTCTGGACCTGCTCCGCTCCATCGGAGCGCCGGTCCTGGCCGGCACCCTGCTGATCGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 485-849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMQ010000330.1 Streptomyces sp. SP18CM02 4_GTGTCGGA-GCTTGCGC-k141_363, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================= ================== 485 30 100.0 32 .............................. AGGCCACCACCCAGATCAAGTCGTCGCTCGGC 547 30 100.0 31 .............................. TCACGTACCACGTGGCTGACATGACGGGCAT 608 30 96.7 31 .............................T GGAGGCTGCGGCGCGAGAGCACGCCTGGCAG 669 30 96.7 71 .............................C ACTCGGCGATCCCCATACGGACACGGGAGTTGTGGTCCCCAGGCTGTCCTCATGGGTGGCCACCGGCTCAG 770 30 100.0 22 .............................. CGGCACGGCTGCGCGCCGCCCT Deletion [822] 822 28 80.0 0 .....-......A.........-C.A...T | ========== ====== ====== ====== ============================== ======================================================================= ================== 6 30 95.6 38 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CCCACATCCCCGGAGAGGCAGAAGCCCGCTCACCGAGCACCGCCAAACCCACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGGCGGCGAGCCCACCACCCCCACCCCGGATGAGGTCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAACCCGCCTAACCCCCAGGCGATGGGTCGTTGTTGGGCAGGACGGCCACACCGCGCCCCGGGGCCGACTCCACGGAAGGCAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGAGACCAGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCTCCAGAAGGTGAGATATGCCGGCTTCCCAACAACATGGCAAAACCCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGGG # Right flank : TGCGCCCCCGAGTGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGTCGGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAACAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCGGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.72, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 603410-603197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMQ010000330.1 Streptomyces sp. SP18CM02 4_GTGTCGGA-GCTTGCGC-k141_363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 603409 30 93.3 31 ...........T.................G TCCGGATCACGGCGGCGGGCCGCCGCCGGGC 603348 30 96.7 31 ...C.......................... TTCCCGGGCGTGAGCGCTGGACCCGGCAGGC 603287 30 100.0 31 .............................. ACAGCGTGAAGACCGAGCGGTAGCCCGTCGC 603226 30 76.7 0 ..A.........TGT.......G..C...G | ========== ====== ====== ====== ============================== =============================== ================== 4 30 91.7 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CCGACAAAATCCCACCCCACCTCCCCACGACGACAGAAGCCCGATCGCCGGACACCAAGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCACCCCTGCCACCACGCCCACACTCACGACGGCGACCCCACCACCCCCACTCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTAACCCCTGCCCCACGGCTCCCGGTTGGGCAGGGCAGAAACGCCGCATCCCCAGGACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGGCCCAGATAGGACCGGCGGCGGACAGAATGAGCATCAGCCGAACCACACCTGACCACTTTGCGACGGAAGGCGAGATATGCCGGTTCCTCAAGAAGTAAGCAAAAACCGCCTTCCCGCCACCTAAACCCCCAGGGCACGAAG # Right flank : AGCGGCCCGGGGTCCACTTGGCCCTGACACTGCGCGCCTGCTGTTCGCGCGACCCTCCCCCGGCCCGCAGGCATCTGCCGCCTGCCGAACGGCAGAGCGCCCGGTCGCCGTACGAGGGGTACGGCGACCGGGCGCTCCGGTTCCACGGGTCAGGTCGGGGGAAGCGGCATCGGGGGGACAAGCCGCTTCCCCCGGTGGGAACAGCGCCTGCGGTCGGTCGTCGCGGTCAGGGGGAATCGCGCGGCGGGCCGACCCCACAGAGAGGCCCTGTTCCGGCCTTCCGGGTCCTGCCAGGTCCCGTCGGGCTCGGTATCCATGCTGCCGGGCGGGACGGCTCGGCGGGGCGGGCGAAAGGCCCCGATGGCCGGGTCGTAGGTCCTTAAAAGGTGCATCAGTGATCGAAAACAGCCATCAAATGCGGTCATGCGTACGGATAGAATCGCCCGACCGCACATGGGGCCGACGGGGAGGCAGGATTGTGGCCAAGGCAAAGACGATCA # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 480371-480848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGMQ010000328.1 Streptomyces sp. SP18CM02 4_GTGTCGGA-GCTTGCGC-k141_360, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================== ================== 480371 29 100.0 32 ............................. CTCCAGCGGATGGGCCTGAACCCGATCGAGGA 480432 29 100.0 32 ............................. AGGCCGACCAGCGGGCGGGTCTCCAGCGCGAG 480493 29 100.0 32 ............................. TCCAGCCCGGAGAACGTCTCGGGCATCCCCTT 480554 29 96.6 31 ....................A........ CAGCCAGCCCACGATGCCTATCTCCGGTGGG 480614 29 96.6 56 .......T..................... CGCGGGTGCGGGGGTGGTGGTCCCGCCGACGGGCCGCCGGGCGGGACGAATCAGTT 480699 29 93.1 32 ...G.....................G... GATCTCTGGGGGAGCGTCAAGCGCACCGCATC 480760 29 93.1 33 .....T..............A........ CACGGGCTCTTCCCGTCCGGCATCCTCGCGGCG 480822 27 82.8 0 ........--............C.CC... | ========== ====== ====== ====== ============================= ======================================================== ================== 8 29 95.3 36 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : TGCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGAAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGGGCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCCGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGATCGCGGCGGCTGGGGGCGGGGGCCGGGGCCGGGGGGCTGCCGCCAACAGTCCGGGGCACGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAGGCAGATCCCCGGGGGTGCTGACCTCGGCCTACCTGGCAGCCCATTCGAAACTTAAGGCCACATATGCCCGACTCTCAAGAAGTTCCCAAAAACGACCCCTCGGCCGGATAAACCCGCAGGCCACGAAGG # Right flank : CTCCACACCCCCGCCCGACTCCAGCCAGCCGGGCCCCCTCCCCCATCGCGATGCGTACACCCACGGCCCCCGTCCACCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCGTGCTGTGGCCGGCCGACGAACCCTGGCCGGTCTGCACCGAACCGCACAAGCGCAGCAGCGGATACCGCATCGCGGACGTACGACGCGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAACGGGACCTGCTCAAAGAACTGGGCCGCAGGCACCGTCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGTCCTGGCCCAGTTGTACCGGCGGGACGT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //