Array 1 39766-39912 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJPB01000222.1 Photorhabdus laumondii subsp. laumondii strain HP88 scaffold_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 39766 28 100.0 31 ............................ CCGGATTGAACATATGATCAACAGCGGCAAA 39825 28 100.0 32 ............................ GCCAGCATCGCTAGCATATATTGTCAAGTAAT 39885 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 36 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGATGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTATTTGGTTTCTAATTAGTGGATGAAGGGACCCTGGCACCAATATCTAATGTAAACTTAAGGCGTTGGATGAGAAACGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATCTTAAGGAAAATTTAGTTGCTCTTATTGCTGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCTAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTGATTTAAAAGAAAAATAAAACATCTCCTGAAAAAAGGGTTTTTTAATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : | # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16268-15940 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJPB01000242.1 Photorhabdus laumondii subsp. laumondii strain HP88 scaffold_59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16267 28 100.0 32 ............................ GAACACCTGGCTTTATTCAGTTAGATAAAGGG 16207 28 100.0 32 ............................ ACAATGCATACAAGCAGAAAAACCTTGCTGTC 16147 28 100.0 32 ............................ TTGTGCGCGGTTCAAACTACCGCCAAACTGAT 16087 28 100.0 32 ............................ GCTCGCCAGTTGTGTGAAATTCTGAATACACA 16027 28 100.0 32 ............................ TCTCTTAACAATCATATTTTCGCAAATTTCTT 15967 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCATTGAATGATTTGCAGTCTTTATCTTGGTTAAAAGGACTCCGGGATTATGCTGAGGTGATTGATATCAAGCTGGTACCTAAGGATGCTCGATATCGTCGTGTTAGCCGAGTGCAGGTAAAAAGCAATGTTGATAGGATTCGCCGTCGTTCGATTAAAAAAGGGTGGTTAACGGAGGAACAAGCTCGGCAGTGTATTCCAATAAGCAAAGAGCAACGTACTCATTTACCTTTTTTGCGTCTTAAGAGTTTGTCATCAAGACAAACCTTTTCATTGTTTATCGAACAAGGACCAATAGAAGATAAACCGACACTGGGAGTTTTTAGCTCTTATGGATTAAGTGCATCAGCTACTATTCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTCAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATATTCTTTAATAATCAGTAAATTAAAGGTAGTATTTAACA # Right flank : TTGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCATTTACGAGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTATTGTGAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGTGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTGCAGCCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAACCATTGCCACGTTGTTCTGCATCAATATC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2924-3251 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJPB01000040.1 Photorhabdus laumondii subsp. laumondii strain HP88 scaffold_121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2924 28 100.0 32 ............................ TGTAAGAACGATACCAAAGACAAGTATTCCCA 2984 28 100.0 32 ............................ TTGTTTATTCTTAAGAACAACGTAGTAGCTGG 3044 28 100.0 32 ............................ TATTAAAGGGGATCAAAATGAATACATCAACA 3104 28 100.0 32 ............................ CTTTTGAAGGGCTAAGTGTTGCCGGGCCGATA 3164 28 100.0 32 ............................ GCAAGTAAACCCGGTGGCTATAATCTCATCTC 3224 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCAGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAGGATCACGTATTAACCGCATTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAGTCAGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGGGTGGATTTTAATCTATTGATTTTTAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : ATGAGTAAGCTTCAATGAGTTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTACAATATCGCTACTCTGTAAATAAATATTTCCGAGTAATTCATTTATCATGAAAATAATTTTAATGGTTTCTTAGTTACATAAAAATAGGTGTTATTCTAATTGGTTTATTTAATAAGTGCTGAAATTCCGTTTCATAATTATTTGATAAATGCTAACTTTGATTTTATATTTTTGGGATAATAGTAATTGAATAGAAAAAATAGATAAATAAAGAGTGAGTGAAAATAAATATTCATATAACTTGAGTTCGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3-571 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJPB01000054.1 Photorhabdus laumondii subsp. laumondii strain HP88 scaffold_134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 32 ............................ AGAAATCTTGGAGAAAACTGACATGACAAGTA 63 28 100.0 32 ............................ TTAGAAAGATTAAAAATTCCGCAATTTTGGAG 123 28 100.0 32 ............................ ATTCACCGCACTATCGAAGAGCTTTCCAAACC 183 28 100.0 32 ............................ GCGAACCGCATCACCTTCAAACTGAAACACTC 243 28 100.0 32 ............................ GTGGAACCCCAGCCCCAGAGCAATACAGAGAG 303 28 100.0 32 ............................ AACATCTAATTCATTAATAGGAACAAATAACC 363 28 100.0 33 ............................ ATTAGCGGCGCTCGCCATCGGGGTTTTTTCTGA 424 28 100.0 32 ............................ CTCAGTGCATATTACCTCATATTCAACGAGCG 484 28 100.0 32 ............................ ATTAATCTTAGCGCGATTCTCAGTTTTGTGGT 544 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTG # Right flank : GCGCGATAACTGCCTTAGGTTGTTAGGTTATAATATTGGAGGTTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCATCTTCCATCACAACGTGATACCAGGGGGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGTGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCTGTACCCGGTAGTTGAAGCCATTTTTTGTTTTAAATTGCAAATGTGGCTTCATCTATTTTTAGGTTAGCTGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4266-3938 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJPB01000270.1 Photorhabdus laumondii subsp. laumondii strain HP88 scaffold_84, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4265 28 100.0 32 ............................ TTGGGCCAAGGGCGAACTAGTGCATTACGCAA 4205 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 4145 28 100.0 32 ............................ TGATGCCGACGAACGGCAACAATGCCGGTGAT 4085 28 100.0 32 ............................ TTTGAAAACTCCCTGAAGCAATGGCGTGACCG 4025 28 100.0 32 ............................ ATCGAGCTAAAGAAATTTGTGAAAATATGATT 3965 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAGACGAGGTATTGATAGTGGCCGTAGAATTTTAACGCATCAGGGGGATGCTATCCGAAATATTCAGGGTTCGTTCGCCGGCATGATAGCACTAAATTATCATTTGGCAACAAGAGGGGCTTTTTATGCTAGTCAAGTTCTTGGAATAGCGACAGATGGCAGTTTCAAATCGATAAATATTTCTGACACAGATACTCCATACGGCTTTGGGTTCGAGGCGTCAAGGGTTGTTCCTGTAGCCTCAGAGAACCGCCCTCGCAACATAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCTAGAAATAGAAGAAGAGACTGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATTTATTGATTTTTAAGTAAATATTGTTTGTCCCACAAAAAAGGGTTTTTTATTTTTTATCATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : AGAGGATTAATTGAGCGCTTTTAGTGAATATTTATTCATTGCACAACAATGATGTTAGGAAAGCATGTTAGGAAGGGGAGGGGCCGGCATAAAAAAAGCCACCTTGCGGTGGCCTTTTCTTTTTCCTAACTCACTGTTTTATCAGCGAATTTTATTTGGTGCCCAGGGCGGGACTTGAACCCGCACAGCCTTACAGCCGAGGGATTTTAAATCCCTTGTGTCTACCGATTTCACCACCTGGGCTGAATTTGGAGGCGCGTCCCGGAGTCGAACCGAGGTTGACGGATTTGCAATCCGCTGCATGGCCACTCTGCCAACGCGCCTTTCTATATTCAACGACATTCAACGACTAATTCAGCATCCAACTTCTGAACAGTAAGTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCAACCTTGGCAAGGTTGTGCTCTACCAACTGAGCTATTCCCGCACCGCTTTGAACTAGCTGATTTACTTATTTGTTTTCGTAAATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 8087-7570 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJPB01000270.1 Photorhabdus laumondii subsp. laumondii strain HP88 scaffold_84, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 8086 28 100.0 32 ............................ GACAGGAAAACATGAATATGAATGGCATGAAG 8026 28 100.0 32 ............................ CGCGTATGACTCGTGAAGGGATTCATTACGTT 7966 28 100.0 32 ............................ GTTTACCAGTGAGTAAAACACCTCAGCAGGAA 7906 28 100.0 32 ............................ ATGAAGGCTCTGGGTGTTAAAGTCAGCGGGGC 7846 28 96.4 41 .......................G.... GNTTAGAAAATGAAGGCTCTGGGTGTTAAAGTCAGCGGGGC 7777 28 96.4 32 .......................G.... GATTTGGGATTACCATCTGTAGCCACCCCAGA 7717 28 96.4 32 A........................... ATAAAAAGCCCCTTTTGCTGCCAGCTCAAAAT 7657 28 96.4 32 ....................T....... ATGAAGGCTCTGGGTGTTAAAGTCAGCGGGGC 7597 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ ========================================= ================== 9 28 98.0 33 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTATTCGCGGATGGGATGATGGTCGAGGGGTAGATCCAAAACGTTCATTATTGAAATGGCAGCAGGGGTCTTATTTACTACAGGAGGCTGGTCTAGCTGATAATGTTGTTAATTTCTCACTTAATGATCGTGTGGCATTACAGTGGGATATTCCGCAAAACGAAACCATTTCATTAAGAGCTAGGGCTGCTACAGCAGGCCCTGGGACTTGGACCACCAATGCAACTTATATCGGGGTATCAAGACCTCGCAATATCGCATTTAACTACATAGTGAGAGCAGAATAATGGCTGAACAAAAATACGCTTGATAGCCAGAAATAGAAAGAGAGACGGCTTTCTACTTGCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATTTATTGATTTTTAAGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATCATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACG # Right flank : GGCAACGCTACGTTGTTTTCCTCAGATTTGCGGATATGTTCTTCTAGGCGGTAGAGAGTCATATTAAGATGATTAGGGGTATACCCGTCGTCTTTCAAGTTGCCTCTTTGTTGGCTGCGCTCACTCACCCCGGGAGCAGAGATAACTCTGTGACCGGGGGGAGAGAGCGGATTCGTTCAAAAAAGTTCTTTTAACTCTAACTGACACCATCACAACAAATGCGTTTGGATACATTGCGTCTTGTTATGAACGACACAGCAGCAGCCCAGAAAGCCATAGGGTTTAATTGGTGATAACACAAAATTGTAAACAGGATCAATACTGTCGCTTAGATATTCGTGTCCAAATGCCAGAAGATTCATCTTGGAATTTAAAATAGAAGGCGTTACAGGAAGAGATAGAAGGAATAAGAGCAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGTATGTTTTCGATTCTAAAATATTTAATTACTTATTACTGCTAATTATAT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTGCACTGCCGTACAGGCAGCTTGGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //