Array 1 15588-18497 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSIH01000050.1 Vibrio cholerae strain N2812 NODE_195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15588 28 100.0 32 ............................ TAGCGCATAAATCTCAAAAGCTCCTGATTCAT 15648 28 100.0 32 ............................ TAAAAAGCCGGGTTCAATGGTCACTTTGATTT 15708 28 100.0 32 ............................ TGAATGAAGTAAAGGCGTGTATGTCATCTGGA 15768 28 100.0 32 ............................ TTGCTTGATGGTGAAGTAACCGCGATCGATAA 15828 28 100.0 32 ............................ TTTCTGCCAGATTGGATAGCAGGGATAATATG 15888 28 100.0 32 ............................ TTACACCGTACATACGCGAATTAATTTTAGAA 15948 28 100.0 32 ............................ TCAGTCATTACCTGAGGCACTACAACTGGCCG 16008 28 100.0 32 ............................ AAGCCAATCGATTTGGCAAACTGACCCAACAA 16068 28 100.0 32 ............................ TAAAAATAGAGCAGCAAAAATAAACCAAACAA 16128 28 100.0 32 ............................ TTTCACAAAAAGCAAAGCAATATGGAAATCAA 16188 28 100.0 32 ............................ ACAAGGGTATCTATTGCCGAGATCGCAAAGTG 16248 28 100.0 32 ............................ TATTAACTTTATGAGTCAATGGGGATAATCTG 16308 28 100.0 32 ............................ TGAAAGTAATCGTCTAATCGGCTATTTAACAT 16368 28 100.0 32 ............................ GATCTTAAACATTCTGCGACCAGCTTTGTCTT 16428 28 100.0 32 ............................ TTTTCTAACGAGTCCATGCGATAAGCAAAAAA 16488 28 100.0 32 ............................ TCAAGGGGAATAACAACATGTTGATGGTCATT 16548 28 100.0 32 ............................ AATCACCCGGATGGAATCGGCAATCGCGTCCA 16608 28 96.4 32 .C.......................... ATAAACATCCATACCCATTGATTTCGTGACAC 16668 28 100.0 32 ............................ TAGCATTAAGTGAATTGTTGGAGTGCCCACGC 16728 28 96.4 32 ...........T................ TTATGTATGCCCTGCAGGGCTGAAAACTGACG 16788 28 96.4 33 ...........T................ AGATAAGCGTTGTTTAAGCGGCTGCGGAACACG 16849 28 96.4 32 ...........T................ ACGCTATTTGGCGAATTCGTCCACGTAAAAAC 16909 28 96.4 32 ...........T................ TTCGCTTAGTTGAGTTTGAGCAAGATAAACAA 16969 28 96.4 32 ...........T................ ATTTCCTTGATGTGCTTGATTTGATCAGCTTT 17029 28 96.4 32 ...........T................ GTTAAGCGTGGGTTATACATTGTTAATGGTCG 17089 28 96.4 32 ...........T................ ATAATACAACAAAACTCGAGTAACTCTAGCAA 17149 28 96.4 32 ...........T................ ACCAGTGGTGAGCTGAAGCATTGAAGTACCTT 17209 28 96.4 32 ...........T................ GCTTCGATCAAGTCAAAATCGAACTGGTTTGT 17269 28 96.4 32 ...........T................ AGCTCATCTAACTCTTGCCAAACTTCTGGCTT 17329 28 96.4 32 ...........T................ ATTTGAGCGCCGAGTTTAAACGATAGTTCATA 17389 28 100.0 32 ............................ GTTGAAATACCATGCTTTTTTTGATCTCGAAT 17449 28 100.0 32 ............................ TTGCTGGCTGGTTATGTGATGCCAAACATGTT 17509 28 100.0 32 ............................ TTCAAATAGAGGGCTCGGGCGGCTTGTCGGAT 17569 28 100.0 32 ............................ TTAGTTTGGGATTGTCGTGTGGTGTGTCCGGT 17629 28 100.0 32 ............................ AAACGAAAGCCGTAGCCATACAGTTAAAGTAA 17689 28 100.0 32 ............................ ATTCGAACTGCGGCATTCAGCATGGTTTTACC 17749 28 100.0 32 ............................ AGTAACAAAAAACTCGCCAAACGCATGGCGGA 17809 28 100.0 32 ............................ TGTAAATAATATTTCTGCCAAAGTGTAGAGCG 17869 28 100.0 32 ............................ TGAACGAGTTGGACAAACTCAGGCTCAGGCGA 17929 28 100.0 32 ............................ TTAACCAAATAGCTAGGCAGTTAAACAGCGCT 17989 28 100.0 32 ............................ TGGCTTCTTGTTGGTGCGTGTACGTGGAGTAA 18049 28 100.0 32 ............................ TTTTCTCAGTGCCTCAACAATGCCCACGCCAC 18109 28 100.0 33 ............................ ATAATACACCACACAAGAGAAACGCCCCTTAAT 18170 28 96.4 32 ...........T................ GAAACTTTCGTTATTAGTGATGGTGAAGGCAC 18230 28 96.4 32 ...........T................ ATGACGCAGCTATCGATATTAGTCAAGGTAAC 18290 28 96.4 32 ...........T................ ATCACTTTCGGGTTCCGTTTGTTCACCTTCGG 18350 28 96.4 32 ...........T................ AAACGATGAGATCTGTAAAAATGGGGTTTTGA 18410 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 18470 28 89.3 0 ..........AT.............T.. | ========== ====== ====== ====== ============================ ================================= ================== 49 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTGCTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : GGGCGGGATCGAACTTTAACCACTGAAAATAAAAGACTTTATTTTATTGGGAACTTTTCAAGGTAATCAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //