Array 1 74052-75997 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUSO01000012.1 Clostridium baratii strain 796-15 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================================= ================== 74052 29 100.0 36 ............................. AAAAAATAAAATAGGCTTATCATATTGTTTAGAAAC 74117 29 100.0 37 ............................. TTAGTTAAATACAACCTCTAGGACTTCCCCAAATCTA 74183 29 100.0 37 ............................. TTGTGTATCTTTATTAAGAACTCATTGTTATAATCCA 74249 29 100.0 38 ............................. GAAGTTTGTATAGTATCGAGAGAGGGGCTAAAGCCCCA 74316 29 100.0 37 ............................. TATCTTGTTGTACAAAAGAAGTTTTTTTCATTCTATA 74382 29 100.0 36 ............................. CAAAGATTATGCTAGAAAAATAGCAAAAGCTTCATT 74447 29 100.0 37 ............................. GTAAATACTACTATAACTACTCCTTTAGAACTTCCAA 74513 29 100.0 37 ............................. CATAATTCCATTCTAAAGTTGAACTTTGTACTTGCTT 74579 29 100.0 37 ............................. ATTAGTTTTCCTTTCTTAACTTTATCTTTAAATAGAT 74645 29 100.0 37 ............................. TATGAAGAGTTTTATAAATGGGCTAATGAAATGGCTA 74711 29 100.0 38 ............................. TTCTCAATAGCGTTAAAACAATTTAAAGATTTTTATGA 74778 29 100.0 35 ............................. AAATTTAATATTGGGAGAATTTTATGATTAGAGTT 74842 29 100.0 36 ............................. CTACGTTACGTTACTGTTCCAGTTGCTCTTTGTGAT 74907 29 100.0 36 ............................. CTACGTTACGTTACTGTTCCAGTTGCTCTTTGTGAT 74972 29 100.0 38 ............................. AAAGGTATTAAATAATCATAAAAAAATTCCATAATAAA 75039 29 100.0 37 ............................. TAAGCTAAATCTGAGCTAATTGTATTACAAGAATCCG 75105 29 100.0 36 ............................. AGGATATTATTAGTCACACCAACAGGGAAAAGTAAG 75170 29 100.0 37 ............................. GATGAAAAAGTATTAGTTGGTGAAGGATTATTGAATA 75236 29 100.0 36 ............................. GAACTAAGACAGTATGGATTAGAATATGAGGAAATA 75301 29 100.0 37 ............................. TGACAATACTATAAAAGAAGTATTTAACAGAACTATT 75367 29 100.0 36 ............................. TGAAATAATACAATTTAATCTAGTTCTTATCGCTTT 75432 29 100.0 37 ............................. TATGAAGAGTTTTATAAATGGGCTAATGAAATGGCTA 75498 29 100.0 185 ............................. GAACCTACACTAGTACCAACAGAATATCGTAACTAAGAATAATATAAGTTAACATAATATCCATATTCTTATTTAGATTAGTTATGTTTTATATTAATTATATTTAAAAAACTTTTATGTGAAGGTTTATTATAAAAATTATTGGAAAGAATTATTTGATGACTAATTTTTTATGATTTATAATA 75712 29 89.7 28 A......C.........A........... TATATAAAATATAAAATAATAGAAAAAA Deletion [75769] 75769 29 82.8 169 .......C........AA.....T....G TGCTGAAAATAATATTTCAGCACTTTATTTTTTATTACAAGTATTTCAAGTAAATTATAAGAAAATGTAATATATATTATTATAAAACTAAAAATAAACAATAATAAACAAATTTTAGGCTTATTTTGAATTTTTAAATTATAATAATTTGAAATATAATAAATTTATT T [75791] 75968 28 79.3 0 A.........T.A...AA..-........ | A,T [75991,75995] ========== ====== ====== ====== ============================= ========================================================================================================================================================================================= ================== 26 29 98.1 48 GTTTTATATTAACTATGTGGAATGTAAAT # Left flank : AAGAATATAGACCTTTAAAGGCGTGGTGGTAAAATGTTTGTTATAATTACTTATGATATAAAAATTCAGAGAATAAATAGAGTTAGAAAATTATTAAGAATGTATTTAACGTGGACTCAAAATTCCGTTTTTGAAGGAAAGATAACAGAGTCTAAGCTTCAAAAATGTTTAAACGAAGTTAATAGCCTTATCGATAGAAAAGAAGATTCTATTTATGTATATAGAGTTCAAAATGAAAAAAATATAAAGAAAGACGTTATTGGAGAAGAAAAGAATTTTGATGAATTATTTATTTGATAGTATAATAAAAATATGAGATTTGCAGTAAACCGTAAAAATGATTAGATTGAGCAGAAGCCTTTAAAAATCAAGGATAGAGGTATGTTGTATACAAATTAAAAAAATAAGACTGAAGGTTTACTGCATTTGCTGGGATTATTTTTAGAAAAAATAGTCTATAAATGGCTTAAAATGGTCAAAAAGAGCTTATTAATTTTGGG # Right flank : TGTATGATATCTAATGAAAAGAAAAATAAGATAATAGAAAGGTTTAAAAATAATGATGATAAAAATATGTCTAAAATTGCTAGGAGACTTAATGTTTCCAGAACTTTTGTTTAGAAGTTATTAAAAGAAAATGGATTGATATAATATCTTGAATAGGTTTAAGTATTAATTTGAAAATTAACTCAATGTTTAATAAAAGTTTATTGAAAGAATAAATTTAAATTCATAATGATGAACTTTTATTATTATGAATTTAAATTTTGCAAAAATATTTTGATTTTAAAATTATTTATTAAATTTTTGGTTTTAAAATATATTTTACTCAAATAATTATAAAAAAATAATTATGGACAAAATAGGTCACTAATTGAAGGTAAAATATAATCATAAAATAAATTGACAAAATTTAATTATAGAGTATAGGAGGTGCAGGATGAAAATTTCTATTACAGGAAAAATGAAAGAAAAACAAATTCCAATTGGATATAGAATGTTTGTAT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.59, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 82950-83304 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUSO01000012.1 Clostridium baratii strain 796-15 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 82950 29 100.0 36 ............................. TAGCAAGAGCAGTTCCTCCAAGTTCACCAGCCATTG 83015 29 100.0 36 ............................. ATAGTAGATATAACCCCAGGTTTTCTGCTAGATTAT 83080 29 100.0 36 ............................. CACATAGATACACTTTATTATACTGTCTCGCTTGAA 83145 29 100.0 36 ............................. GTTGATGACTTGCAAGGAGATCCGTGTTTCTTTATG 83210 29 100.0 37 ............................. TTTAAAGATGGAGGTCTTAAAGATAAGCAAGTAAGAA 83276 29 79.3 0 .T.....T...........TGCG...... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 96.5 36 GCTTTATCTTAACTATGAGGAATGTAAAT # Left flank : TGAGTGTATAGATAAATTAAAAGATATAAACATAATAAAACTAGAAAAAATCAAAATACGAGATACACTTAAAAGTTTTACAGTATCAGTAGGAAAATATGACTTAGAGGTTTTAGGAAAATCAGCATTATATAAAGAAATAGAAATAAGTGAATATGAGAAAATTCCAGTTATAAAATGTGAATATGGAGAATTAGGGTTTATAAGAAGCAAAGTTGAAGATAATAATATATATGATAATTTTTTATAATAAAATTAAGTTTAAGTATTTAGTAGATTAAATGATAAATTAATGATAATATTATAATAATATATTAATTTGCAGTCAATCTAAAAATAATAAGAAGCTAGCTAAAGCTAGTAAAATCAATAAGTGAGCAACACATTTGCTTGGTAGTGAAATTTAATACTAACGGTTTACTGCAAAAGAGATTAGAATAAATGAAAAATGATACTTACAAATGGCTTGAAATGGTGACAAATACTTGTCTATTTTTGGG # Right flank : TTTAAGATGATGTTGATTCTAAATCAGTCACGCTCAAAATTAACTTAATTATATTAATGTTGATAAATTATAGTATTAGAAGATAGGGAAGTAGCTATAAAATAGCACTTCCTTTTTCTATATGCTAAAATATGTATATAAAAAAGAAAAGGAGAAAATCCATGAGTTGTATATTTTGTGAGTACAGTAAAGAAGAATATATAGCAGAAAATGATTTATGTTTTGCTATTTTTGATAAATTCCCTGTTAATGAAGGACATGCTCTTATTATTCCTAAGAGACATTTCCAAAATTACTTTGATGCAACAAAAGAAGAGATTGCAGCAATGTATGATTTATCACAAGAAGTTAAACAATTAATTGATAATAAATACAGTCCAGACGGATACAATATTGGAGTTAATGTTAACCATGAAGGAGGTCAAACTATTATGCACCTTCATATGCACATTATTCCAAGATATAAAGGTGATATAGAAGATCCTAGAGGTGGTATTAGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTATCTTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //