Array 1 676-107 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGWD010000241.1 Limosilactobacillus reuteri strain L3B scaffold241, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 675 36 91.7 30 A..T.....C.......................... ATTGGATATGATAGTGTAAAAGAAAAGTTT GTCT,C [663,669] 604 36 100.0 30 .................................... ATAGTTCGCTAAAACGTTAGAATCAGGAAT 538 36 100.0 30 .................................... ATGGCTACTTAGAAAGCCTGTCGGGGATAA 472 36 100.0 30 .................................... AACGCTGAACGGGAACGATTAAAGCGTGTT 406 36 100.0 30 .................................... ATGGCTACTTAGAAAGCCTGTCGGGGATAA 340 36 100.0 30 .................................... AATAATCCTAGCTTGCTTAATCTATGCTCT 274 36 100.0 30 .................................... TCACTACCTAACCGCTACTGCGTCCAGTTG 208 36 100.0 30 .................................... CAGATTGATCTAGTGGGGTAGGTAATCCTT 142 36 72.2 0 .........................GTCAAC.CCGA | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 96.0 30 GTTCTAAACATTATTGATTTGAAGTACATCTAAAAC # Left flank : AAAATAGTGGTGCCCATTAAGGTCCTTCTTTCTAATGGAATGTTGAGGTAACACCATTAAAGACCTTGATGGGTTTTTCTGTCCACTTAAATGTTCAACTTA # Right flank : ATTTAAAATTGTCAGAAATCACCGGTTTAAAAATGTACTTTTTCACCGGTTTAAATGCTGTTTTGTATGTTGTTCCGTGTAATCCTTCATGCGATATGATTTACCAG # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAAACATTATTGATTTGAAGTACATCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 6514-6082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGWD010000321.1 Limosilactobacillus reuteri strain L3B scaffold321, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6513 36 100.0 30 .................................... GCTTAGGAAATTCATTGTATGACAAAATGT 6447 36 100.0 30 .................................... TAAGAAGCAGGTGTAAAGCTATTACTGTTA 6381 36 100.0 30 .................................... ACAGAATACGGTTATGCTCATGGAGATTAT 6315 36 100.0 30 .................................... CTTCACGTAGTGCTTCTACTCGTTCTGTTA 6249 36 100.0 30 .................................... TCATGCTTGATAGTTTCATCAATAACCTTG 6183 36 100.0 30 .................................... GTACAGAATTTCTTCTATGACCGATACCCA 6117 36 88.9 0 ...........G............G.......T..T | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.4 30 GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Left flank : GGCAAACGTAAAGGTCAAGCTGTGGCTACTTTTGTGGAGCGTAAGAGTCGCCTGACAATTGTTAAACGGCTCCATGGCCGCGACAGTCAGTCCATGACTCAAGCCGTACTTGAACTAGCTAGTCAACTTCAAGACAAGCTCAAGACGCTGACCGTGGATCATGGTAAAGAGTTCGCTAACTATCAGACAATTGAACGGCAAACTGGTACTCCGGTTTATTTTGCCCATGCTTATTCACCACATGAACGCGGTAGTAATGAGAACCGTAACCGAGTTTTGCGACGATTTATTCCCAAGGGACAAGCTATTGAAGAGCTGAGCGATCGCCAGCTGGTTCAAATCAATTGGTATCTGAATTCCCGGCCACTTAAATGTCTTAACTGGCGCACACCAATCGAGATCTTCCTGCTTAATTTACGTCATTAAATTCGTTCAAGTTATTTCTTGCAATCTGCCATAATGTTTAGAACAAGCTGCTTATGGAAACGGTAGACTTCTCA # Right flank : TACACGTAAACTATAACAATCACAACGATGATATTTTTAGATATACTCCAACCTCGTTTTCCCCGCCAACTTCAGCGGGGCTTTTTCATTTTCTTTTCAAACTAGTGTATAATATTTACTAAACCCATTACTAAAAGAGGTGAAAAATGATGGCGACAATTAAAGAAATTGCGGAAAAATCAGGATATTCACCAGCAACGGTTTCGCGCCTTTTGAATAATGATCAAAATTTATCGATCAGTCCAAGCACCCGCAATAAGATCATGACGGTGGCTAATGAGCTTGGCTATTGGAACAACCACAAGAAAAACTCTCAGCAGCAACCAATCCGTCCTAATCTTGCTCTATTGTATCGGGTAAGCGGTGAAGAACAACTACAAGATGAATATTTTGCGTTTTTGCGAAATGCAATTATTAAAGAAGTCGATGAGGCGGGAGCGCAGGTTGAAATCTTTAGTAATATCAAGGATTTGATTGCGGTGGCTGATTCGTTCCAAGGA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 20374-18488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGWD010000333.1 Limosilactobacillus reuteri strain L3B scaffold333, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20373 36 100.0 30 .................................... TATTCAGAGATTAATTTAGCTTTCTTTCCT 20307 36 100.0 30 .................................... GATTTTATCGTTGATGCCTTTAAGCAGATT 20241 36 100.0 30 .................................... TAAATTTTCAACGTATGATTATGTTCTTCA 20175 36 100.0 30 .................................... TAAGTCCTTTGGGATAAATAATATTTGATG 20109 36 100.0 30 .................................... ATGGTTGTACGTGCTTAAAGTATTTGAAGC 20043 36 100.0 30 .................................... GAAGATTGGAACAACGAAGCCAACGGAGAA 19977 36 100.0 30 .................................... GGTATTAATGGTAATAAAGATAAGATAAGA 19911 36 100.0 30 .................................... AACATCCAGCTTAACTGGTGCTCCCAGCTT 19845 36 100.0 30 .................................... TGATTGTTGCTGACGAAAAGAAGGGGTTAT 19779 36 100.0 30 .................................... TTGAATTCTTTTCGATTTCGTCCAATCCTA 19713 36 100.0 30 .................................... AAGGAACAAGGATTATTTCAAGAGTTAAGC 19647 36 100.0 30 .................................... TGATAATATTATCATAATCAAATTCTTGTA 19581 36 100.0 30 .................................... TCATTTTAGGAACATAATCAGTAGTATAGA 19515 36 100.0 30 .................................... AGGATGGAGAAATTATCAAAGGTGTGATTG 19449 36 100.0 30 .................................... TCCTTGCACTCAATTAATGCTTCAACCATG 19383 36 100.0 30 .................................... GATTTAGACTGTTTAGATTGGGGCTTGATT 19317 36 100.0 30 .................................... TATTTTTTAATACGTTGATCAGTAGCTTCT 19251 36 100.0 30 .................................... ACCAGCCATTGTTGGTCTTTACGTTGGCGA 19185 36 100.0 30 .................................... GACAAGGACGGGAACATTATTCCTGATCTT 19119 36 100.0 30 .................................... CTCAAAATGCTGTTAATCGGGCTACTGCTG 19053 36 100.0 30 .................................... AGGGCGAAGAATTCATTGATGCTGGCACGT 18987 36 100.0 30 .................................... CATCTGGTTTCGCATATCTTGGCCATCGAG 18921 36 100.0 30 .................................... TACTTGAATATCAAGACTACATTGGCAAGG 18855 36 100.0 30 .................................... GCAACATAACGCTAACGATGAATATTGACA 18789 36 100.0 30 .................................... GAGCTTGTAGGTAAAGAACGTGGTGGACAT 18723 36 100.0 30 .................................... GATTAAGGAACGCTTCTTGATACTCACAAT 18657 36 100.0 30 .................................... AAATGAAGATGGCAATACCTAAAAGACTAT 18591 36 100.0 30 .................................... ACCCATTGTGAAGCCTCCTCATCGCTCAAT 18525 36 80.6 0 .....................C.C.CC.G...T..A | TG [18503] ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.3 30 GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Left flank : GAATAATAATTTAGCAACAATTTATTCAACGGAAATTGTAAAGTCAATAATAAAAAATTTAACAGAAGAGGATCGTCATTTGCTAGATGCTGAAGCACGTCGGCTTTATTCGAATGTTCAAGAAATTTTATTTATGACAGATTTACCGCTCGAAGTTCGTTACGATGGTGACATCAAACGATTATTAAATTATTGTAAGATTAAATTTTCACCATTAGTTCAGCAAAGCCCTTATGATATAATAAAAACAGATTTAAAGTTACATTTAGAATGTGCTGATAGTTCATGTGTTGGGTTAAGTAATGTCGCTAATTACCTAGATTCAGCTCAATTTAACGAACTACAACAACTAAACATTGAATTGAAAATTCCTGTTTTATTAATAGAATTCACAGAAATAGATAATCGTAAATACTATGGAAATGCGGATTTTTATTATATTGACAAGGATTTTGTTGATTGGAAGTTATAAACTATTAATTCAAAATTAGAAAATAATG # Right flank : ATGTTGGAAAACACCGATTTAAAATTGTCGGTTTTCCAACATTTTTTTATACTTGTTTCATATTAAATCTGGAGGAATTTATATGAGACAAGATATTCGACAGGAGTTGAGAAAATATCAAATGGATAAAATTAAACCAAATTTTACTGAATTAGGTCGTCAATTAGGCTGTGATCCAAGGACAGCTAGAAAATATTATTATTTGAAAGACGATGGTTATGAAAACAAAAGAAAACGACGTAAAAGTAAATTAGATCCCTATCGAAATATTATTGATGAGAAAGTTAAGAATTCTTGTTCAGCTACTTCAATTTTTTATTTCATTAAGGAGATGGGTTATACCGGTGGTATAAGTATATTGCGTGATTATTGCCATCAAATTAAAGTAAAAAAACAAACAACTCCAGTTGTAAGAATTCAGACTGCGCCAGGTCAATCTGCACAAGTTGATTGGAAAGAGGATTTTGTTCTACATACCCGAAAAGGTACTCCTATTAAGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //