Array 1 86517-84699 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLD01000002.1 Streptococcus thermophilus strain BIO1488 Streptococcus_thermophilus_BIO1488_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 86516 36 100.0 30 .................................... CAGCACTAGCCGCAAGCCCTTGTATATTAA 86450 36 100.0 30 .................................... TAGAAATCAAGGAACTTGGATGAAAAGTAA 86384 36 100.0 30 .................................... ATATGAAAGGGAAATGATATGAAGAATGAA 86318 36 100.0 31 .................................... TTTTGGGATACAACACGCAGTCGTTGACTTG 86251 36 100.0 30 .................................... GTTTGAGATGCCAATGTTTTTCAATCCTTG 86185 36 100.0 30 .................................... GTATCAAAAGACGCATTCATGAAGCGAGCT 86119 36 100.0 30 .................................... AAAAACAATTGAAATTCATAATCAGCGCTT 86053 36 100.0 29 .................................... GCTTTTAACGTTTTAAGAGAATACCCTCT 85988 36 100.0 30 .................................... GTGACGCTGCAATGACTTGCCATAGTAATT 85922 36 100.0 30 .................................... ATACTGGTATATAGTAATTCATACTTCATC 85856 36 100.0 30 .................................... TTGGTTTCATATTTACTCCTTTGTGTTTTG 85790 36 100.0 30 .................................... CTGATTTGGTCTTGTTCTTTTGTCCCTTTT 85724 36 100.0 30 .................................... GCAGCAGTTGAGAACTTTAGCGTCCAGTGG 85658 36 100.0 30 .................................... TGCTACTATGAAGGACGCTGTTGATACTTT 85592 36 100.0 30 .................................... TCTTCTTTAATCTTTTTTAACGTCAACGTT 85526 36 100.0 30 .................................... GTATCCATTAATATAGTAGCATTTCTATCA 85460 36 100.0 30 .................................... AGTAGAGAGACCAGCACACTACTGTACTAC 85394 36 100.0 30 .................................... CTTCGCACGAAAGTTTATTAGACAACTCGC 85328 36 100.0 30 .................................... TGATAGAGCTAGAATTGTCTTTTTTACCGA 85262 36 100.0 30 .................................... CTGATTTGGTCTTGTTCTTTTGTCCCTTTT 85196 36 100.0 30 .................................... GCAGCAGTTGAGAACTTTAGCGTCCAGTGG 85130 36 100.0 30 .................................... TGCTACTATGAAGGACGCTGTTGATACTTT 85064 36 100.0 30 .................................... TCTTCTTTAATCTTTTTTAACGTCAACGTT 84998 36 100.0 30 .................................... GTATCCATTAATATAGTAGCATTTCTATCA 84932 36 100.0 30 .................................... ATTCATTAATATCTGCAAGGATGTCTTGTT 84866 36 100.0 30 .................................... GAGAAAGTAGCCCATTCGGCCCATTCGGGG 84800 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 84734 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 152871-154755 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLD01000001.1 Streptococcus thermophilus strain BIO1488 Streptococcus_thermophilus_BIO1488_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 152871 36 100.0 30 .................................... CTGACGTTCTAGTTCAGCAGCATCAGCGAT 152937 36 100.0 30 .................................... TTCAGTTTGGCTTTTTATTTTAAAAAACAT 153003 36 100.0 30 .................................... GAAAATCGCTAAAGAAGCAGTTAAGAAGTT 153069 36 100.0 30 .................................... TGTGGCGCTGTCCTATGACCGTACTGGTCT 153135 36 100.0 30 .................................... GTTGACAGTTAAATATAGCTTTACAGGAAA 153201 36 100.0 30 .................................... GTCTTCTAATACAGAAACACGTTGTTGACT 153267 36 100.0 30 .................................... CCCATGACATCAAGATGATATCCCCTGTCA 153333 36 100.0 30 .................................... AATGAAGAAGCCAATTCAAGCGCAAGGGTC 153399 36 100.0 30 .................................... CGAAATAGACGCTTTAAGCATAATGGAAGT 153465 36 100.0 30 .................................... GCTCTTGGCTCAGCTCACAAAAGAATAGTT 153531 36 100.0 30 .................................... CTCTAGCACGCTAGTATGATCGTAATGACC 153597 36 100.0 30 .................................... TATAGAATACAAGAAGATTAAAACAGTACT 153663 36 100.0 30 .................................... TGAGATTGGTGCCTTAACACAAGATAAATT 153729 36 100.0 30 .................................... AACTACTTAGGAACAGTAGCGAGGGAGATT 153795 36 100.0 31 .................................... CCTTAAATGCCAACGGAATCCTTAAGATTAA 153862 36 100.0 30 .................................... CTTCGGTGTACACGCTCATTTCAATGGTTC 153928 36 100.0 30 .................................... CTAAAGAGCTTCTACACGTAGCTAGCAAGT 153994 36 100.0 30 .................................... CTTTCCAAACGTTACGATTTGATGTTGGAT 154060 36 100.0 30 .................................... AGCTATCTCCATTAGTTCTTGACGTCCCTT 154126 36 100.0 30 .................................... TCTTTTTCAGCAAACCATTTCTTAACACCT 154192 36 100.0 30 .................................... TGAAGAAATAGTCATGATGAACCCAGTTAG 154258 36 100.0 30 .................................... AATTTTAACAGATATAGTGTAATCGGTATT 154324 36 100.0 30 .................................... CTATTACTATACTTCCGAAGAGATTGCAGA 154390 36 100.0 30 .................................... AGTGTTTTTCTGAACACCGTTCACAGTCAG 154456 36 100.0 30 .................................... TTATATTTTTTTAAGGCGGTCAGTTTGGTC 154522 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 154588 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 154654 36 100.0 30 .................................... GGGTGCTGATATGTCTACCTCTGGTGGAGC 154720 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //