Array 1 53501-54132 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASHE010000007.1 Bifidobacterium bifidum strain K05 scaf_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 53501 36 97.2 30 T................................... ATATCTAACCACGAATATAGTTAGACATGA 53567 36 100.0 30 .................................... CCAGCAGGCCAAGTTAAGCGGCGTGAGTTT 53633 36 100.0 31 .................................... AACCATAGGGGGTTACTGTGCCACAATAAAA 53700 36 100.0 30 .................................... CAAAACACAACCGCGCAGACGTTCCAATGT 53766 36 100.0 30 .................................... CGTGTTGGTTTGACATGTGGTGTGTGTTGT 53832 36 100.0 30 .................................... GGTACATACGGAATGGGTCAGCAAGCATCA 53898 36 100.0 30 .................................... CTATATCCCGAGGGCTGCCTGGCCGATTGT 53964 36 100.0 30 .................................... ACCAGAGCGGACATGTGCGGAGCAGACCTG 54030 36 100.0 30 .................................... GCGTCAACGAGTGAGAAATCGGAATCAACA 54096 36 94.4 0 ..................................TA | T [54126] ========== ====== ====== ====== ==================================== =============================== ================== 10 36 99.2 30 GTGGTCAAAGTCATTGATCTGACAGGCATCTGAAAC # Left flank : TGGGAAGCTTCCCGGACGGGAACGGCGCGCTCATGCTCGTCTGTGCGCGCATCAGGTACGTCACCGCGAACGAATGGTCCAACCGGCGTTACCTCGACATGTCCCGGCTCGGTGACAATCTGCAGGAAGCGAACCGGTCATCGCGCCATGGGCGGGCATGATCCAAAGTGCGCAACCTTTCGGGCACTACCTCCCAAAACCTCCACTGAACGGAAAAATCAAGCCACAACAGACACTGTCAAACAGGCTTACACACCTTGAAGCATGAAAAAAGCCATCAGGGACTTCCTGATGGCTGGTCATTTGCGGTATGCGCTCCACTTATTCCTTGGGCATCGGCCTGAGGCCGCCAACGACAGCGCTCTTCACATAGGATGTCACTATAACAGTCCGAATATTGTGCATCAATCGTTTCCCATATGTCACCAGAATCAAAAGCACACCCCGGAAGCTATCCAGAAGACAGCAACAGAGGTGCCCCTAACACTATTGCGCATCAC # Right flank : TTTGACTCGTTGGGGTCCGGGGTTATTGCGTTTGGGGGCCATTATGAGTTTTGGTGGTTATTGCGTTTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCAAAGTCATTGATCTGACAGGCATCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 847804-851933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASHE010000001.1 Bifidobacterium bifidum strain K05 scaf_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 847804 36 100.0 30 .................................... GTGATTAGCACGTAACAGCCATTGAAGGTA 847870 36 100.0 30 .................................... TGCCACTATCGCCTTTCCGCATAGCAAGCC 847936 36 100.0 30 .................................... AAACCGGTGAGCTTGAAGTCGATAAAAGCA 848002 36 100.0 30 .................................... GGCGTATGCGTTTCCCGAGCACACAGTACA 848068 36 100.0 30 .................................... CGGTTGCGGTGTCAGCGTCGAGGCGTGTTG 848134 36 100.0 30 .................................... TACGCACCGACGTGAAAAATCTCAACAACG 848200 36 100.0 30 .................................... CCTTCACGGTTTCAGCTTGCCGTACCAGCT 848266 36 100.0 30 .................................... GCCCCAGTGGTTGAGATACATCGTGTTGGA 848332 36 100.0 30 .................................... TGAAAGGAATGATAATGGACGATGAAACCA 848398 36 100.0 30 .................................... TTTTATGACCCGTACATATCAAAGTGCTGT 848464 36 100.0 30 .................................... TGTTCCCTTGGGCGACGTTGGCGGATTGCG 848530 36 100.0 30 .................................... CGGACGTCCATGCGGCCTGTGCGGTCACGT 848596 36 100.0 30 .................................... CGGCGGTTTTAATAATACGTGTCTGCGCAA 848662 36 100.0 30 .................................... ATGCTGCAAGCGGCGATGACGCGCACGGTG 848728 36 100.0 30 .................................... TGCCACTATCGCCTACCCACATAGCAAACC 848794 36 100.0 30 .................................... CATCATTGTTTTTCAACATGCGCCCCGCAA 848860 36 100.0 30 .................................... TGTCAGACAGCCCGGATACTGTGCCCTGTA 848926 36 100.0 30 .................................... CCACACCACCTGTATGGGCTCGTCCAGATA 848992 36 100.0 30 .................................... TGGTTTCTGTTTCCGTCATCGCTTGTTTGG 849058 36 100.0 30 .................................... CGCTGCGTACCGACGTGACAAATCTCGGCA 849124 36 100.0 31 .................................... TGAGGGAGAACCATATGACGCGGCGCCAACT 849191 36 100.0 30 .................................... CGCGCGCGGGCCAACCGTAGTTGATGACGC 849257 36 100.0 30 .................................... TGACTGAATCCAAATTGTCTCTTAGAATCG 849323 36 100.0 30 .................................... TGAGCTATTGGGCGATGGCTGGCGCGTTGT 849389 36 100.0 30 .................................... GTTTTTTCAACGCGTATCTTGAACAACATT 849455 36 100.0 30 .................................... TGCCACTATCGCGTACCCGCATAGCAAGCC 849521 36 100.0 30 .................................... TACCGGTTTGCGGGTCGGTGACGCGCGGTG 849587 36 100.0 30 .................................... ACCCGATGAACCGGCAATATCTCAATGATT 849653 36 100.0 30 .................................... TTGAAAATATTAAAAGAGCGTCGCCGTTCC 849719 36 100.0 30 .................................... CGTACGTGGCGGAGTTCGGCGCGACATCAA 849785 36 100.0 30 .................................... GTCCGCCAGAATGGTGGTGTACAATAGTTT 849851 36 100.0 30 .................................... GCTGACTCCGAGCCGTGTGGCGATAGCGGA 849917 36 100.0 30 .................................... CAGTATCCAATATCGTGGACGGATGACGAA 849983 36 100.0 30 .................................... TGTATTGGTCGGTCAACGCGGCGGGGTCGC 850049 36 100.0 30 .................................... GAATTTTGCGAAAAAGCGCCCGAAGACACC 850115 36 100.0 30 .................................... CGTCTTGGGACGTTTCGCCGCGAAATTATC 850181 36 100.0 31 .................................... TTGCGAAACTTGTCGATACCGTGACACGTGA 850248 36 100.0 30 .................................... TAGGCACGATGCCTTTGCCAATATATCTGC 850314 36 100.0 30 .................................... TGGCGGTGGAGCAACCCGCTCAGCGTTTTT 850380 36 100.0 30 .................................... CGGTGTTTTTTGATGAAACCTGTTTTGTCG 850446 36 100.0 30 .................................... TCGCATAGGCGTTAGCTTGCGAAGTGGCCG 850512 36 100.0 30 .................................... GTAGATGGATTGCGTAAATGCCGCATAAAT 850578 36 100.0 30 .................................... CACGCCCACGCCAAGCCAGCCGTCAACGGC 850644 36 100.0 30 .................................... AGTATAACGCACTCAACGTCACCGATATTC 850710 36 100.0 30 .................................... AAGTCGGTGATCGCCGCCGCTGGGGTGAGT 850776 36 100.0 30 .................................... CTGCTGGGCTCCCGTTACGGTGAGGTGATG 850842 36 100.0 30 .................................... TGTGTATGAGACGGCAAGATGGACTGAGGG 850908 36 100.0 30 .................................... TACACGATGCGCACACGCGCTGGTCATGTG 850974 36 100.0 30 .................................... TCAGCACTCTCTCGACCATCGTGAACTGAC 851040 36 100.0 30 .................................... GCGTGATTCTAGCGGCGCTAGGGCGTGCGA 851106 36 100.0 30 .................................... TAGTGAACATCTCTACATGGTCCCATGACT 851172 36 100.0 30 .................................... GTGGACAGTGCGGTGAGCGCCTTGGTGGTG 851238 36 100.0 30 .................................... GCGGGATTCTTCCGGCAGAATCTAATCTCT 851304 36 100.0 30 .................................... GCTGATCCGCGACGGCGTGCTTGATTCGTT 851370 36 100.0 30 .................................... ATGACTGTCGTGATGTGGTCGCGTCGTTCA 851436 36 100.0 30 .................................... AGTGTCCTCCTCCCTCCGACTGTCCACACG 851502 36 100.0 30 .................................... AGATCGACCCCGCGCAGGCCTGCGAATTGC 851568 36 100.0 30 .................................... CTCGTTAGGGTCGTGCATGCTCTTATCCCT 851634 36 100.0 30 .................................... CTCGACGCGCTGAATGAAGTAATACCATGC 851700 36 100.0 30 .................................... GGTGACGGTGGCGATGCCGGGCACGTTGCT 851766 36 100.0 30 .................................... GCGCGTGCTGCTCATTAGTATGCTCCTATT 851832 36 100.0 30 .................................... TACTCAGGCCAAGACCGACTGCGTTCCCAT 851898 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 63 36 100.0 30 GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Left flank : ATTGCGCGGATGAAGTGGATTATAATGCTTTGTTCCAGAAGCTTGCTGTCAAGAAAATAATCGAAGGATTTACGCCGGAGCAAATCAGTAGATTATTGTCTTTGCAGGCTGAGTTAAAAACAATTATTCAAGATGAGATATGGGGTCAAAATCTACCTCTGACTATTCCCTGCGATTTGGATTTGAAAGCAGCAATTGCAATGGCCAAACCTCGGATTGACACGAGTTCTTTGGGATCCTTGTATGATAAAATTTCGACGGCAGTAGATACTGCCGGTGCTCTTGCCGAGAGCAGGATGCTGGTGACGCTTCATACAACTCAATACTGTGATAACGACCAATTACTTTATCTGCACCGTACTTTATTGCGGTACCAGTTGCAGCTTCTTGACCTGGAATGCTGCAGCAAGAAAGTCATGCTGACAGAGGGGATGAGCCACTATGTCGATGAGGATTACGTTCAGTTCTCATGAACTGTTCAGGAATCCTTAAGGCTATCG # Right flank : CTACTCAGGCCAAGACCGACTGCGTTCCCATGTTTCAGATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTGTCAGATCAATGACTTTGACCACGTTGGCGAGTCGTTCGGTGACCACGTCGTTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACCCATCGTGCGCACGGTCGGCAGTTGGGTGAGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACTACCGAGGCCAAACTGACCGGCGCAGACCTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACGTGCAAGCATTGCAACGCTTCGCGCCAAGAGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACAAGGTAGCCGGTTGGCTACTCTCTCTCAGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACCGAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 852130-852823 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASHE010000001.1 Bifidobacterium bifidum strain K05 scaf_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 852130 36 100.0 30 .................................... CCATCGTGCGCACGGTCGGCAGTTGGGTGA 852196 36 100.0 30 .................................... TACCGAGGCCAAACTGACCGGCGCAGACCT 852262 36 100.0 30 .................................... GTGCAAGCATTGCAACGCTTCGCGCCAAGA 852328 36 100.0 28 .................................... AAGGTAGCCGGTTGGCTACTCTCTCTCA 852392 36 100.0 30 .................................... CGAGAAGGCCGACGACGCCTTGCCGCGCAT 852458 36 100.0 30 .................................... GTGAGGGTGTATCATGCCTAGTCGCAGTCG 852524 36 100.0 30 .................................... TCCGCCGGGGCCAACGTGATGCCGCTTAAT 852590 36 100.0 30 .................................... CGGCTTTGTCGCTGGTGCGGGCTTTTGTGG 852656 36 100.0 30 .................................... CGGAGCCAGTACGGTACGTGCTGATATGAC 852722 36 100.0 30 .................................... CGTCTTTAGCCGCGGAACCGGTGGAAACGC 852788 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Left flank : CCCTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACCTCGACGCGCTGAATGAAGTAATACCATGCGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACGGTGACGGTGGCGATGCCGGGCACGTTGCTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACGCGCGTGCTGCTCATTAGTATGCTCCTATTGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACTACTCAGGCCAAGACCGACTGCGTTCCCATGTTTCAGATGCCTGTCAGATCAATGACTTTGACCACTACTCAGGCCAAGACCGACTGCGTTCCCATGTTTCAGATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTGTCAGATCAATGACTTTGACCACGTTGGCGAGTCGTTCGGTGACCACGTCGTT # Right flank : TGCTTGACGGGTACAACGTGATAGGCGTGTGTTTCAGATGTGAATATTCGTAGCTTTTGAGGCCACTGGTTATTGTGTTTGGAGGCCGGGGTTATGGTGCGGGGAGGCCGGTGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //