Array 1 80256-81603 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIFR01000005.1 Pseudomonas aeruginosa strain KOL14.W.495.36 Scaffold_5_length_707003_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 80256 28 100.0 32 ............................ AAGGACTACGTGTTCAGCAGTCTCGGTGGCGT 80316 28 100.0 32 ............................ GCCCGGTCAACTGGCAGCCACTTGTTCGGGCG 80376 28 100.0 32 ............................ GATCAGGGTCATGAGAGACACCGCTAAAGTAA 80436 28 100.0 32 ............................ GACGAATCCGGGCGATGGTGGCGGCGATGGTG 80496 28 100.0 32 ............................ TTGAAGGCCATGGGCGTGTAACTCGACGGCAG 80556 28 100.0 32 ............................ TTTGAGGGTATGACCATGAAGCGAATCGACGA 80616 28 100.0 32 ............................ TTGAAGGCCATGGGCGTGTAACTCGACGGCAG 80676 28 100.0 32 ............................ TTCCTCGAACACGCCATCAGCAGCCTGGAGGT 80736 28 100.0 32 ............................ ATCGCCGGCGCCGAGCGCGAGACCGTCTACGG 80796 28 100.0 32 ............................ ATCAGCGGATCGGCGCCCATACGCTGCGCCAT 80856 28 100.0 32 ............................ TCGCTGACGATGACCGGCGGCGCCTCCGGCTC 80916 28 100.0 32 ............................ GCTGATCGCCAAGCGCGACAAGTCGACCGGCC 80976 28 100.0 32 ............................ TCGGGGTGGCGGGCCAGGTTCAACGCCAAAGC 81036 28 100.0 32 ............................ ATACTTACCAGTCGCTCCAGGCCCTTCTTTTC 81096 28 100.0 32 ............................ TGGTCACTTGGCGGCCTGCTGGCGCTTCAAGT 81156 28 100.0 32 ............................ ATGAACAGCGACACGGCGGCAAGGTAGTGGGC 81216 28 100.0 32 ............................ ATATCGTGCCTGTCTTGCAGTCCTATCACCCC 81276 28 100.0 32 ............................ TCGAACATCGGCGAGAGAACGTCTGGCTCACA 81336 28 100.0 32 ............................ TGCAGGCCGCCGTCGAGCAATCCGCCGAGACG 81396 28 100.0 32 ............................ TGTCGTTGTTATCGCTGTCCTGCCATTCGTCC 81456 28 100.0 32 ............................ TGGACATCCTCACCGACCTGATCGCGCAGCAG 81516 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 81576 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAAGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 91541-90132 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIFR01000005.1 Pseudomonas aeruginosa strain KOL14.W.495.36 Scaffold_5_length_707003_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 91540 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 91480 28 100.0 32 ............................ GAACAAATGCGGCAGTGGCTCCTCGATCTCCG 91420 28 100.0 32 ............................ ACCAGTTCCACCGCCATCACCACCAGGGTCTT 91360 28 100.0 32 ............................ CTTCAACCTCGCGGCATCCGCAACAACAACCC 91300 28 100.0 32 ............................ TGGAATGACCGGCCCGTCGTTGAACAGCACGC 91240 28 100.0 32 ............................ AGTACTTCGCAGCGAGTAATTGCAGAACCCCT 91180 28 100.0 32 ............................ TGGTGCTGATGGAGCATCACGACCGGCCGAGC 91120 28 100.0 32 ............................ ATCCAGTAAGCCCGCTCGCCCTGGCGCTGGGT 91060 28 100.0 32 ............................ ACTCCTCAGGCGTATCGAACTCGACCCACTTC 91000 28 100.0 32 ............................ CTCACCTGCTGGCGAAGCTGGATCGACCGGTA 90940 28 100.0 32 ............................ GGCACGACGTGCGTCAAGACGCCGACTGACCC 90880 28 100.0 32 ............................ GGCATAAGTCGGTGGCATCCGCGTGTCGTCGA 90820 28 100.0 32 ............................ GCATGCAGGTGCGAAGAAACACCGATTTCACT 90760 28 100.0 32 ............................ ATGTGGTCGGCGTAGCTCCAGGGGCGATGGGC 90700 28 100.0 32 ............................ TGCATCTTCACGGTGACGGTTCGACCGTCCTC 90640 28 100.0 33 ............................ ATGGCGGCTCCTGTCGATGATAAGCGCCTGCAT 90579 28 100.0 32 ............................ TTGGCAAAGCTGCTGCTGAACTATCGAAAGGT 90519 28 100.0 32 ............................ AGTTAGAGCCGGCAGTCGGCCTGCTGTTCGTT 90459 28 100.0 32 ............................ AACCGGTCGCAAATGACTGCAAGGGCTGCTTC 90399 28 100.0 32 ............................ TGCGCCAGGTGCTCCACCAACGCGAGGGGGCT 90339 28 100.0 32 ............................ ATGCACAGCGCGTCGATCCGCGGCAGCTTCAC 90279 28 100.0 32 ............................ TTTCCTCGGTGATGCCCCGGCGAACCGGGGCG 90219 28 100.0 32 ............................ TGCGCGCCGAGGGCGAAGACCTCGAGCAGAGC 90159 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGTTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGGAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTTCTACCCAACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //