Array 1 59335-59789 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVXN01000004.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN050999 CFSAN0509994, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59335 29 100.0 32 ............................. GGCGCCATTACCGGCGAATTAGCCGCCGGGGG 59396 29 96.6 32 .G........................... CAAGTGCCACACCGGCACCGCCTTAGCGCGGA 59457 29 100.0 32 ............................. CAAAACCTGGGGGACGAGGAGCTGTCCATTTG 59518 29 100.0 32 ............................. AGGTGTCCCGGTGGATGCTGGCCCGCAGGTTC 59579 29 100.0 32 ............................. TTACGGCGATATTCAGGCGGGTAGTCCAGCAT 59640 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 59701 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 59762 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 75933-77794 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVXN01000004.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN050999 CFSAN0509994, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 75933 29 100.0 32 ............................. TCCGACTCGCCAACCTGGTCTATGTGCTCTAT 75994 29 100.0 32 ............................. TCAACAACGGACTTACATAATTTTGCTTGTAT 76055 29 96.6 32 ............................T GCACCTTCCAGGATTGCAGAAATATAATTAAT 76116 29 100.0 32 ............................. CCCGTTTTGTGGCGGTGTGGCTGATCGTGTAA 76177 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 76238 29 100.0 32 ............................. GATCGCCCTCCGTTGAGCCATTATGTACAGCC 76299 29 100.0 32 ............................. GCCAGGTCCGTATGAGGACCGTATTTGAGCAG 76360 29 100.0 32 ............................. GTTCGATTCACATCAGGTCTGGGGGCTTACTA 76421 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 76482 29 100.0 32 ............................. ATGTGTGAGATACCGGCGCGGCCTGACATCAC 76543 29 100.0 32 ............................. CGGCGCCGTCCGGTAGTTCGTCGACAGAATCG 76604 29 100.0 32 ............................. TGACGTTATACATTTTCTCGCGAGCGATTTGC 76665 29 100.0 33 ............................. TTGAGCACGACGAAATTTTGGTTTGATGCAGCC 76727 29 100.0 32 ............................. GATACGGGCGCGCGGACGTTCTCCGCTGGCAG 76788 29 100.0 32 ............................. CCGCCAACTGTTTTGATAAATATCACCTGGCC 76849 29 100.0 32 ............................. CTCACGCCCATCTTTTTCCATTCATCCCACAA 76910 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 76971 29 96.6 32 ...........................T. TTGTCAGCGCTGACACTACTCGCTGCTTTCTG 77032 29 100.0 32 ............................. TCGAATCAGGTGGCGAACAGATCGAGTATCGT 77093 29 100.0 32 ............................. CCTGCTTTCTCTATCAAAGGGAAACTTCCTTT 77154 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 77215 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 77277 29 100.0 32 ............................. TGAAATCCATCCGCTACGAACCTGAAGAAAAA 77338 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 77399 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 77460 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 77521 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 77582 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 77643 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 77704 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 77765 29 93.1 0 A...........T................ | A [77791] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGCAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTTAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //