Array 1 264746-264991 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CBTJ020000001.1 Candidatus Competibacter denitrificans Run_A_D11, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence                          	Insertion/Deletion
==========	======	======	======	===============================	=========================================	==================
    264746	    31	 100.0	    41	...............................	TGAAACTTCGCAAAAATCTTTAGCCGGTTTGCACAAGGCGG	
    264818	    31	 100.0	    40	...............................	TGAAACAACATTTGATTCACCTCAAGCCCCCGAAGGATTT 	
    264889	    31	 100.0	    41	...............................	TGAAACAAGCAAAGCATATTGATCGGCGGTTGGCTCTTTTG	
    264961	    31	 100.0	     0	...............................	|                                        	
==========	======	======	======	===============================	=========================================	==================
         4	    31	 100.0	    41	AATTCACCCGCCGTAATTGGCGGGTGCGGAT	                                         	       

# Left flank :   TGGTGAAAGGCCACCCATATGATGATTTTGGTTAGCTACGATGTTCGAACTGAAACACCGGCCGGTCGGAGGCGATTACGGCGTGTAGCGAAAGTCTGCCTTAATTACGGACAACGTGTACAGAAATCGGTATTTGAGTGCCGTGTCAACCAAGCTCAGTACGAAGCACTGGAACGAAGATTGTTAGAGGAGATAGATTTAAATGAAGACAATTTAAGATTTTATCGACTCACTGAACCTTTGGCACAGCATGTTAAAGAATATGGTGTATTTCGAGCCATCGATTTTGAAAATGACTCTTTGGTTATCTAAAAAATTTGCTTGCGCGAACCCCAAGCAAGGTCCTGAAACAGGGGGGTTTCGTGCATGACTCAATTAATTGAAATAATTAAAATTTTATGTATTGACGCAGCTAACTTGCAGATGAAACTTAACAAAGTGAGGAGGTTCCGAAAAATACTCAAAAAATTTTATTTTAATCAATAAGTTGTAAAGATAGG
# Right flank :  |

# Questionable array : NO	 Score: 2.86
# 	Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     AATTCACCCGCCGTAATTGGCGGGTGCGGAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [6,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-15.00,-14.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.64,0.37   Confidence: LOW] 

# Array family : NA
//


Array 1 56916-56655 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CBTJ020000080.1 Candidatus Competibacter denitrificans Run_A_D11, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                       	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	======================================	=====================================	==================
     56915	    38	  97.4	    35	......................G...............	GTTCAGCGGCTTGACGTAGTGCGTCTTGGCGTAGC  	
     56842	    38	 100.0	    37	......................................	AGCGATACATTGCGGGCAAGCCGGTATTGGCGCGAGC	
     56767	    38	 100.0	    35	......................................	AGTACGACCCATCAGCTTACCCGGACACGTACCGT  	
     56694	    37	  89.5	     0	......................G......-..A....T	|                                    	CC,A [56658,56661]
==========	======	======	======	======================================	=====================================	==================
         4	    38	  96.7	    36	AAATTCACCCGCCGTAATTGGCAGGTGCGGATTGAAAC	                                     	       

# Left flank :   GTAATTGGCGGGTGCGGATTGAAACACCTCGCTCCTTGTGCCGGCTGCGCCGCCCATT
# Right flank :  TCACTTAGTAGGATTAGGTTTTCAGGCCGCCAGCAAACTATCTAGGGGCCAACGCGGCATGACCTCAATCGCGGCATCTTCCCCTTGACCAGCTGCCAGCCGTCGCCAACCCGCATAGGCGATCATGGCACCGTTATCGGTACAAAACTCCAAGCGCGGATAATAAACCTGCCCACCCAATTCAGCGGCCAATTCCCACAACCGTTCCCTTAACCGCCGATTGGCCCCTACCCCACCCGCCACCACTAAGCGTTTTAAGCCCGTCGCGTGCAAAGCTCGCCGACATTTGATGGCTAATGTCTCCACCACTGCCTCCTCAAAGGCGCGTGCCACATCCGCTCGATTTTCAGGGCTGGATTCCAACGCTCGCCAAGTATTGATAGCAGCGGTTTTCAAGCCGCTGAAACTAAAATCGCAGCCGGGTCGGTCGGTCATTGGTCGCGGGAACCTAAAGCGCTGAGGATCGCCCTGTTCCGCCAATTTGGCCAAGGCTGGGCCAC

# Questionable array : NO	 Score: 5.70
# 	Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     AAATTCACCCGCCGTAATTGGCAGGTGCGGATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [8,11] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-15.00,-11.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.64,5.28   Confidence: HIGH] 

# Array family : NA
//