Array 1 1674917-1672781 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034192.1 Bifidobacterium breve strain lw01 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1674916 33 100.0 35 ................................. ACTGCCGTTGCTCGTCCAGCCAGCGCGCGAAGCGG 1674848 33 100.0 36 ................................. CCGAAATCCCGGCCATAGCATATCGACCGGCGCGTC 1674779 33 100.0 34 ................................. CCCACCACATCTGCCGTGGGGCGCGTTTTGAAAA 1674712 33 100.0 36 ................................. TCCGCGTCCATGCTGCCGGTGGCCTTGTGGTCGGCC 1674643 33 100.0 33 ................................. ATCTTGGTATCAGATTAAAGCGCTCCCCCCTTT 1674577 33 100.0 35 ................................. GGCCCGAGGCCTGCACAGCGTGGACGTGGAAATCT 1674509 33 100.0 34 ................................. ATGCAGGTGTGGGGGTCGTATGATACAATATTCG 1674442 33 100.0 34 ................................. CTTAAGGCGCGGCAGGCGGCGGCAACCGAAATCA 1674375 33 100.0 36 ................................. AGCAGGGAGTAGGCGGTATTGTAGCGTGTCCCGTAT 1674306 33 100.0 34 ................................. AGCTGGCGGGGGCTGCCACCAACCGTGGATGAAC 1674239 33 100.0 35 ................................. ACGTTGATATCAGATTAAGGCGCGCTCCCCACTTT 1674171 33 100.0 33 ................................. ATCTACAACGGCACCGGTTACTATTCGCCCTTT 1674105 33 100.0 34 ................................. CGGAGCTCATCGCCAACATCGCCATCAATCGCGG 1674038 33 100.0 35 ................................. ACCACTCCCATTGGATTACGGGAGGCGATGGCGGT 1673970 33 100.0 35 ................................. CTCCGCTGTACGCCTTAGATAGATGAACTGCCACC 1673902 33 100.0 34 ................................. AGCCTGTTGGGGCGGCGGGTGGGACTGCGCACAG 1673835 33 100.0 35 ................................. GCCCACACCGTCATCCTGCTCACCGTCGAAGCCGC 1673767 33 100.0 33 ................................. CTTTCATCTGATTGGAACGACGCTTCCGATTCT 1673701 33 100.0 34 ................................. TCGCATGGTCCCGCCTTCGAGGACGAGCATGGTG 1673634 33 100.0 34 ................................. GTTGCGCTACTAGCCGCGTCTAACGTGAAGTGAA 1673567 33 100.0 35 ................................. TCGTGGCTGATGACGCTGGCCCTGTGCAGGGCGGC 1673499 33 100.0 36 ................................. ACCGGCTGGAACACGCAGCCGGATGGCAGGGGCCAG 1673430 33 100.0 37 ................................. TGTGTACGGATACATGGCCGTGGCCGCAACGTTCACC 1673360 33 100.0 35 ................................. GCCGCGAAAGCAAGGCGAGCAAGCGGATCGGCAAA 1673292 33 100.0 36 ................................. CTGTCATTTTGGCTCCTTTATTAAATGGCGAACATT 1673223 33 100.0 36 ................................. TGTGGTTATCGGTGGTCTTGTGTGACGGTGAGTGTT 1673154 33 100.0 33 ................................. CTGGAAGAAGGCATGCGAGGATCCGGACGTGGA 1673088 33 100.0 37 ................................. CCGCGAGTCGCCCGACCATGATATGGAACGTGATATG 1673018 33 100.0 35 ................................. TGGCTCGTCCACAACTGGTACTAAGGAGCGGGACA 1672950 33 97.0 35 ............T.................... CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 1672882 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 1672813 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ===================================== ================== 32 33 99.4 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAATGACGATCTGCGATACAATCAGTGTTGAAAATAGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGTTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAACTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //