Array 1 30708-30162 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMKI01000003.1 Synergistes jonesii strain 78-1 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 30707 36 100.0 29 .................................... GACGATACGCTCCAGTCTCCGGTGTTCGA 30642 36 100.0 27 .................................... TGAAACATACGCTTTGACCGCTATCGT 30579 36 100.0 28 .................................... AGGGATTAGGTGAAATGGATCCTAATGA 30515 36 100.0 26 .................................... TGAGCATGGCGCGCAGGGACTCCCCG 30453 36 100.0 28 .................................... AAACACAACGGACCCGTTCATGCGCGAA 30389 36 100.0 28 .................................... ACATACACTTTGTACATTTTTTATCCCT 30325 36 100.0 29 .................................... AGCCTCTGTTACACTTTTTACGTCTTCCC 30260 36 100.0 27 .................................... GTAAATCTCCATTCCCATGCTTGTTTC 30197 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 9 36 100.0 28 GTCTAGACCTCATAAATAATTTCTACTGTTGTAGAT # Left flank : CTTTTGCATACATGGACAGGACCTGATCCTCTATATTTGAGATATCGGTCTGGTTCTTTTTGACTGACTGCGGTTCGAAGTCACCCTTGCGGTCTCTGGGGACGTCGATCGGGATATCTCCGGCCGAAGAGGTGACTGTTTTAGGGCTGTAGCCGTTGCGGCTGTCATCTGTATGCTTGTTCTTGTAGTCATATTTGCTGTAACCGAGATGGTCATCCATCTCGGCTTCCAGCATCTGCTGGATCGTATCTCCGAGAAGATCCCTCAGCATAGCCTGTACGTCCTGGGCGTCTTCCGGTTTGTAGTGGGAAAGGAGACTCTGAATAAGCGCTTTTCTTTCCGGTGTCAGTTTTCTCTGTCTTGCCATAAAAATATCCTCCTGGATTGAATTTATCTTAACACCAATCCAGGAGGCTTGCTTTCTTCTCTATGGAGTTTACACAGAATTTGTTATACTCTCGGATTTTTTTGTTTTTTTGAGCAACAAACCAAAAATAGGG # Right flank : AGAATGGGATTTGCATTGGCCCATTCCGTGTCTAAACATCACTTACACATCCAAGGAGGACACGATCCCCGCAGGTTCGTGAATATACTATCAGGTCCTGCTGGATTCGCTTGATATTATCTAGTACTACCAGCAGCTCGGCAGAGCCTATCATCAATCTGAAATCACAGAGAAACAGCGCGATCTCCATGAGCTCGTGGGCTTATGTTTGCCGTCATAACTATAAAATTACGGGAGTTCAGCCTAAAAACGGCGCACGGCAAGATATAGAGATAAATGGATAAAAAAACGACTGGGGGCGGAGAAAGGCCCTCAGTCGTTTTTGTTGACTGTGCTTTGAACGCGCCCGTTATTTCGTCAGCAGCGTAAGCATAGCTCCGGCAGCGACGGCCGTGCCGATGACCCCGGATACGTTCGGGCCCATCGCGTGCATCAGTATATAGCTTCCGGGGAACTCCTTCGAGATGACCTTCTGGCAGACGCGCGCCGCCATGGGGACG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGACCTCATAAATAATTTCTACTGTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1614-1777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMKI01000050.1 Synergistes jonesii strain 78-1 contig_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 1614 36 100.0 29 .................................... GACGATACGCTCCAGTCTCCGGTGTTCGA 1679 36 100.0 27 .................................... TGAAACATACGCTTTGACCGCTATCGT 1742 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 3 36 100.0 28 GTCTAGACCTCATAAATAATTTCTACTGTTGTAGAT # Left flank : CTTTTGCATACATGGACAGGACCTGATCCTCTATATTTGAGATATCGGTCTGGTTCTTTTTGACTGACTGCGGTTCGAAGTCACCCTTGCGGTCTCTGGGGACGTCGATCGGGATATCTCCGGCCGAAGAGGTGACTGTTTTAGGGCTGTAGCCGTTGCGGCTGTCATCTGTATGCTTGTTCTTGTAGTCATATTTGCTGTAACCGAGATGGTCATCCATCTCGGCTTCCAGCATCTGCTGGATCGTATCTCCGAGAAGATCCCTCAGCATAGCCTGTACGTCCTGGGCGTCTTCCGGTTTGTAGTGGGAAAGGAGACTCTGAATAAGCGCTTTTCTTTCCGGTGTCAGTTTTCTCTGTCTTGCCATAAAAATATCCTCCTGGATTGAATTTATCTTAACACCAATCCAGGAGGCTTGCTTTCTTCTCTATGGAGTTTACACAGAATTTGTTATACTCTCGGATTTTTTTGTTTTTTTGAGCAACAAACCAAAAATAGGG # Right flank : AGGGATTAGGTGAAATGG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGACCTCATAAATAATTTCTACTGTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 682-839 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMKI01000006.1 Synergistes jonesii strain 78-1 contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 682 28 100.0 37 ............................ CACTCTATATTTTCGTGGGTGCATATATTGCGCTCGT 747 28 100.0 37 ............................ ATTTCTTGGGCGGATAGTAATTCAGGCTGAACCCGGT 812 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 3 28 100.0 38 TAGAAATCTTCCTCTAAGGAATGGAAAC # Left flank : AGGAAGGGCTTGACAGACTTGAAGAGAAGTGGGGCTCGAAATACCCGTCTTCGGTAGCGAGCTGGCGGAACAACTGGCCTCAGTTATCCGCTTATTTCAAGTATCCCTATGAGCTGCGCCGGATGATCTATACGACAAACCAGATCGAGAACTACAACCGGCAGCTCAGGAAAGTGACAAAAACACGTACGATCTTCCCCTCAGACGACGCCCTTCTCAAGCTCCTTTATCTTGCGACGATGGACATCACTGAAAAGTGGACCGGCAGGGACAGGGACTGGAGTAAAATTCTGTCACAGCTGTGCATTTACTTTGAGGAACGCATAGAACCCGGAGATCTGGAATAGCCCTAAACGCCTATAAGAAAAGTCCGGGCTGCAGTCCATTGACAGCCCGGATAGCGTATGTCATTATGGTGATACTGAAGCAGTAACGGTAACCCTTTGATGTCTTACATCGATCCAGGGGCAAGGGGTTTACACAGAATAAGTTACACTACC # Right flank : CTCGAGTCTCCGAAGGCGAGGTACGTCCCCGAGCCCAGTTAGAAATCTTCCTCTAAGACCCGTTCAGTTCTTTGCAGCGCGTATCTTATCGAGAAATTCCCTGTCGGCCGGGCAGAATTCGTACTGAGGAATCTCTTCGGCCGTTATCCAGCGTATATCGCTGTGTTCGAGCTTTTGCGGCGTTCCCTCGGCTATCGCCGCGCTGAAGAGAGTCAGATGCACGGCTGTATCGGGGTATGCGTATTCTGCTTCGGCAAAGACGCTCCCGAGCAAGAGCGCGACGCCGAGTTCCTCACGGCATTCGCGGATAAGGGCCTCTTCCTTACTCTCGCCGGGCTCTACCTTGCCTCCGGCGAATTCCCACAGCCTTCCGCGCGCCTTGTGCGCGGGCCTCCGGCAGATCATGAATTTATCTCCGCTGCGAATCAGCGCGGCTACGACTTCGATCATAAAAATCCCTCCGCTTTTCCGCATGGCGGCGAAAGCGCCGCCATGCGTCG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGAAATCTTCCTCTAAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //