Array 1 107863-106386 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTP01000006.1 Salmonella enterica strain BCW_4234 NODE_6_length_213947_cov_2.51783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107862 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107801 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107739 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107678 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107617 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107556 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107495 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107434 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107373 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107312 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107251 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107190 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107129 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107067 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106964 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106903 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106842 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106781 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106720 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106659 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106598 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106537 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106476 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106415 29 96.6 0 A............................ | A [106388] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125610-123995 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTP01000006.1 Salmonella enterica strain BCW_4234 NODE_6_length_213947_cov_2.51783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125609 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125548 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125487 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125426 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125365 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125304 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125243 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125182 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125121 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125060 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124999 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124938 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124877 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124816 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124755 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124694 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124633 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124572 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124510 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124449 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124388 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124327 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124266 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124205 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124144 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124083 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124022 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //