Array 1 1152728-1151153 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKN01000001.1 Listeria monocytogenes strain FSL L7-0147 NODE_1_length_1443475_cov_79.126432, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1152727 29 100.0 36 ............................. TAGTTATACATAAGTCCATATTTTTCACGGTAATTT 1152662 29 100.0 36 ............................. GCTCTTAAAACAATGACAAAAGTAGGAATTACATCA 1152597 29 100.0 36 ............................. TGAAATTTCTCAGTAAAATCGTTTAATAGTGTTAAT 1152532 29 100.0 36 ............................. CGTGGACGCGCATTCGTTTGTTGGCACGCGCGGTGG 1152467 29 100.0 35 ............................. AAAGTAAATGCGTTAGAAACGTCATCTCAGACACG 1152403 29 100.0 36 ............................. TCTCGTATATCAATTCTCTGTCGCTCAAATCTTCAT 1152338 29 100.0 34 ............................. GTACTTATTGTGATCATACACAAGTATCGCTGTC 1152275 29 100.0 36 ............................. ATTTATATTATAGTAGTTTCCTTCTAAAAAATCAAC 1152210 29 100.0 34 ............................. TGCTGTGGCACCTTTCTGCATTCTTTCTGCTTCG 1152147 29 100.0 34 ............................. CTGCTTTTGTAATTCCGTTAATAAGGTCTGCAAA 1152084 29 100.0 35 ............................. TTGCTAGCAGCAATTGATTTTGTCAATACCACCGG 1152020 29 100.0 34 ............................. AACATTTAAATCACTCCTTAATTGGTTACAGATG 1151957 29 100.0 37 ............................. CCACATCGTTTTTTGCTTTGATCACTTTCCAACCGTT 1151891 29 100.0 36 ............................. GTTGGAAAAGTTAAAGACTTAATAGCGAAAAACAAT 1151826 29 100.0 37 ............................. TTCTTAATCGCTTTTGCTAGTTGAACCATGATAGAAA 1151760 29 100.0 34 ............................. AACCTGAAAACAAATGACTATCAAATGCTATATC 1151697 29 100.0 34 ............................. ATGGCTTTTAGTCCCGGCTGAATCGCATCCCATG 1151634 29 100.0 36 ............................. TTGTTCCACCTCCAATCTAACCATATAATGGTACTG 1151569 29 100.0 35 ............................. GTCGAAGGCGGCAATGAGTTGCTTGCCAGTTTAAA 1151505 29 100.0 35 ............................. CTGAAAAGGACTGGAAGAATCTTCAATTCATTATA 1151441 29 100.0 34 ............................. CTTGGACAATTGTTTGTTTTGTTGGTACAACGAT 1151378 29 100.0 37 ............................. GTTAGTAAATTGTTCGAACAAACCAGTTCCGCCTAGG 1151312 29 96.6 36 ........G.................... GACAGAAACGTCGCGCACGCGCCTAAAATGATACCT 1151247 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 1151182 29 93.1 0 .......................C....C | A [1151157] ========== ====== ====== ====== ============================= ===================================== ================== 25 29 99.6 35 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATAATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1170355-1169554 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKN01000001.1 Listeria monocytogenes strain FSL L7-0147 NODE_1_length_1443475_cov_79.126432, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1170354 29 100.0 35 ............................. GTGGAAGAAACATGGAACTATGACAGTGATCCAAT 1170290 29 100.0 36 ............................. ACATTCATAACCAAAATTAGTAATGTATTCTTTAGC 1170225 29 100.0 36 ............................. AACTCAAAAACAATGCAAAAAATGGCGCTTTTGACC 1170160 29 100.0 34 ............................. TAACTTTTCTTCTGTTCTAAGGCTGTCTGATGTA 1170097 29 100.0 35 ............................. CAATGAACACGCGTTCTCTGTTTTGTGGGACTCCA 1170033 29 100.0 35 ............................. TTTGAACCATCTATTTTTAAATTTGAAGTGACAGG 1169969 29 100.0 37 ............................. AAATGGCATGCGTTAAGACAATCCCATTCTGCATCAT 1169903 29 100.0 35 ............................. TCAGGAATCCCTGAGTGAGTTGAACAAAATAGAAA 1169839 29 100.0 35 ............................. CCGCAAGTAGAGAAACGTCTTTCGCTTTTTAGCAT 1169775 29 100.0 35 ............................. TTGATTTTATTAATGTTCTTATCAATAGAGTCATT 1169711 29 96.6 36 ............A................ TCGACATAACACATATATTTAAAATCATTAAAACTA 1169646 29 100.0 35 ............................. GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT 1169582 29 75.9 0 A.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 97.9 35 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCAGGAAACGCAACCGAACGCTTACAAAACTCCATTATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGTAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACAAAACTCCACCAACATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAACTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTTTTATTTTTCACTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //