Array 1 1396-105 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKPM01000050.1 Raoultella ornithinolytica strain GEO_6_Down_B NODE_50_length_33821_cov_15.92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1395 28 100.0 32 ............................ TGGCGTGCTGCCGGGTAGCGGTCATGGTCAAC 1335 28 100.0 33 ............................ AAAAAAGCGGCGTAACTTTCAACCAATAGCGGA 1274 28 100.0 32 ............................ CATCTCAGGGAGGATGTCCATGTCCGCAGACT 1214 28 100.0 32 ............................ ATACCCAAAAGAGGCTTTTTTAATAAACTCAA 1154 28 100.0 32 ............................ CACAGGAAGCTGAATCCGCCGGAACTATTTAA 1094 28 100.0 32 ............................ AGAAGTAAAGGAATATATGATTAATGGATTTT 1034 28 100.0 32 ............................ GCCGCGCTATGGAGTCAACAGAAAACCGTGTT 974 28 100.0 32 ............................ ACAAGGTAAGAGCCTCCGCCGTTAACCTTGCC 914 28 100.0 32 ............................ ATCAGCAATGAGAGCCTCAACCTCTCTCATAG 854 28 100.0 32 ............................ TATTGATGCCGCTTTAGTTCAAACAATGAAAT 794 28 100.0 32 ............................ AACAACGCCGGAAGGTTTAGCGCCACCATTGA 734 28 100.0 32 ............................ AACAACGCCGGAAGGTTTAGCGCCACCATTGA 674 28 100.0 33 ............................ CTGATTATTCAACGCACCTTTTACGCCAACAAC 613 28 100.0 32 ............................ TATAAATCCACTGGCAATTGTTGGTGGTCATA 553 28 100.0 32 ............................ GTGTCCAGCCATTCCAGGATTTAGCCATGATA 493 28 100.0 32 ............................ CAGTGCAGCAGCCCGATGATGTAGTGGATCAT 433 28 100.0 32 ............................ AGCGACTTCACACTGCGCCAGGCCATGGCGAA 373 28 100.0 32 ............................ GTTGCCTGTTTCTCACAATTATGGGGCAAAGG 313 28 100.0 32 ............................ GCATGAATGTATGACCTCATGGCTATATGACG 253 28 100.0 32 ............................ TATCGTATACAGTATTGTGCGCCATACCCCAC 193 28 100.0 32 ............................ AAGGGGGTCCGGCGTGCCGGGGGTGCGCAGAG 133 28 71.4 0 ........A.C.G.CCC...A.....T. | G [112] ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.7 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CACGTTCGCTTTCGCCTGGCGTCAACGTGCCGCCCGCGCTCTTGCGCCGGGCAACGTTGCGCTCATTAATCCCGGTGATGCGCAGAATGTCGGTTTTCGACATTTCCGTCCACTCATGAATATTATCCAGAACGCTGACCGGTAATCCCATACTCAGCAGCTCAATCAACTGCATACCCCGATTCGCCGGTAGCCCGGCATAGCGCCACAGCGCATTATCGGCAGGTTGCTCTGCAGGAACCCAGGTTTTCATCTTCCCTCCTGAATAAGGACATTTGTCATGCTTTATTATAGTCATTTGTCGGGTTGTTGAAAATATAATCGGCGGGCAGGTCATGAGTTGATTGCGGTTTTGTGGCTGGCGGCCCAACTCCTTTTATTTGTTTATTTTGTAATTCATTGATTTTTATTAAGTATTTTTTGGCGTTAAAAAAAGGGTGAAAGGAATAAATTTGAGGGATTTTATATATAAAACAAAGAAGTGAGTTGATATTATCTCA # Right flank : ACAACCTTCAGTTAGTAATGTCGGTTGGTTTTTCTTCATATTTCCCGTTTCGCCAGCCCGCTGCAAATTCAGCCGGCGTCAGGTAATTCAGTGATGAATGTGGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 126-514 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKPM01000129.1 Raoultella ornithinolytica strain GEO_6_Down_B NODE_129_length_3677_cov_15.3583, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 126 28 92.9 32 CA.......................... TATGAACACTGAACTTCTGAAAGCGTACCAGG 186 28 100.0 32 ............................ GCTGGTGGCATTGGTCGAGCGGCCCAGGTTCT 246 28 100.0 32 ............................ TTCATGGCGCGTGATATTACTTTCATGACGCG 306 28 100.0 32 ............................ CATAAAGCGGGCTTTTTTGTGTCTGCGATAAA 366 28 100.0 32 ............................ GATCTGGTCAACCCGCCACGCTTCCGCCTTTA 426 28 100.0 32 ............................ ATACGCCTTCAACTGCATGTTTATATGATCAA 486 28 82.1 0 ......................GT.TTG | T [506] ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCTTCGGCCTCGCGGAGAATACAGATGATCTGTTCGTCGGAAAAACGCTTCTTCATGGGGATGTCCTCATGTGGCTTATGAAGACATTACTAACATCGCGGTGTATTAATCAACGGGGAGCAGGTC # Right flank : GCATTAACTAGCGTATTCTAAAATAAACCGTTCATTCACATATGGAATGCAAACTGAGAAATCGGATACGGACGAACACAGCCCTTCGCACGGACCGTCAGCGGGACGGTCCGCTATTTTCGTATTATTAGCCTTTTACTGCTGCAACACTTCAGCAAATTTCGCCAGCCATTGCGGATGGGCGGGCCAGGCAGGGGCGGTGACCAGGTTGCCGTCAACATGCGCCTGATCGATACCGATCTCAGCATAATGCCCGCCGCTGAGCCGTACTTCTGGCGCGCAGGCCGGGTAGGCGCTACAGGTGCGGCCTTTCAGTATTCCGGCGGCGGCCAGAAGCTGCGGGCCGTGGCAAACGGCGGCAATGGGTTTACGCGCCGCGTCAAACGCCTGAACCAGTTTGAGCACCTCGTCATTCAAGCGCAGATACTCCGGCGCTCGTCCACCGGGGATCAGCAGGGCGTCATAATCCTGTTCTTTTACGGCAGCAAAGTCGGCGTTGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //