Array 1 25997-26805 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009997.1 Yersinia kristensenii strain Y231 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25997 28 100.0 32 ............................ TTCATCATTAGAGAAATCAGCAAGACGGGCCA 26057 28 100.0 32 ............................ TCTACTTAATAACGTGATAGCAATCTTCACGA 26117 28 100.0 32 ............................ GCTTAGTTCACCGATTGAATGGATGCGACAGG 26177 28 100.0 32 ............................ TTCGACTGATTGCTGGAATGCTTCGGCGGGGA 26237 28 100.0 32 ............................ ATAATGTCATGACAGTGCTGGGGAGTGAGTCG 26297 28 100.0 32 ............................ AAATGCGGCGCATAGATACCCACGACTTTCTG 26357 28 100.0 31 ............................ ATGAAGAACTGCTTTCCTTTGAAGAGAATGG 26416 28 100.0 32 ............................ TGATGATATCTGCCTGCTAACGGTTAACTACA 26476 28 100.0 32 ............................ ATCACGACAGTAACCGGTGAAAGGAATGTAGC 26536 28 100.0 33 ............................ AAGTCTACCGCGTCATATTTGCTTTCGTTATAA 26597 28 100.0 32 ............................ GTCGATTGAAATCGATTCACGAACTACGAACA 26657 28 100.0 32 ............................ TGCTTTGTGACCCCCTGATATCCTTCGTTCCG 26717 28 96.4 32 .C.......................... TCTAGTGATTGATGATTGTTTCCCCGAGTCTC 26777 28 82.1 0 ....................TAC.CC.. | G [26799] ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGGCTTTTTGGGCGATTAAACACGAACAAGCTTTACAAGCGGCGGAGCTGTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTCTGTTTCTCCCGCTGATTATCCTTGCTTAATCTCCTGAAGTACCTCAATTTTATCGGTCATATTTATTCTTTCTGACATAACAAAACTAGCAAAGCCCGCCCACAAAATAGTGAACTATAAGTTTTTCAAACTCTCTGTTGTTCGTCACATCATCCGCAGCAGAAAAAGGCTTAATAACATTTTGGCTAAACCTCATTTTAAACCCTTTTTTTAACGTACTTTTTAACTTATTGATTTTATATAAAAACCCCCAAGATTTTAAAAAATCATTTTTTATTACTACGGTCTAATGCGCTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : AGATTGAGACCCCAAACACATATTGTTACTTGCAGTCGGGTTATGACTATTTTCTATTACCGACTTTGCCAGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGAAGCGCCCGCTGACTGACAAGATACAATTAACCCGTTAGAAATATTTGGGCGTTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATTTGAAAACAATTCTTCATTCAAAACGTTCAAATATTTATTATTTAGAATATTGTCGCGTATTAGTTAATGGCGGGCGGGTTGAATATGTCACTGATGAGGGGAAACAGTCCCTTTATTGGAATATCCCCATCGCGAACACCACTGTCATCATGTTGGGGACGGGGACCTCTGTGACTCAAGCCGCTATGCGTGAGTTTGCCCGCGCGGGTGTTTTAGTCGGGTTTTGTGGCGGTGGTGGGGCACCACTTTTTGCGGCGAATGAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 35700-39215 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009997.1 Yersinia kristensenii strain Y231 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 35700 28 100.0 32 ............................ ATTTAGAGGAGTTTGTAAGGCAGTTTAAATGG 35760 28 100.0 32 ............................ ACTTAGCGTGGAGGTAATCAACCGTGAGTTTC 35820 28 100.0 32 ............................ GGCATCCGTTCAATGAACGCCAGTTTTGCGGT 35880 28 100.0 32 ............................ TGAATTTTCCAATAGCTATCTAGCCATGCTGA 35940 28 100.0 32 ............................ TCGCAGAGGTGGCGGTATTGCTTCTTGGATAG 36000 28 100.0 32 ............................ TGCCACTTAACCGGTGGCAGCAATAAGACCAC 36060 28 100.0 32 ............................ CAGCCAGTGTGAGTATTCTTCGCTGGCCAATG 36120 28 100.0 33 ............................ TGTTGGCCCACTCAATTGCAAGCCGTGATTCAT 36181 28 100.0 32 ............................ ATTTCATGAGATACGAAGTTTAGCTTCACGAC 36241 28 100.0 32 ............................ AAGATAGAGGTTAAGCGTGCCAGATTATCACT 36301 28 100.0 32 ............................ GCACAAGGTGTGCTACTGCAAGGTCAGGCTGA 36361 28 100.0 32 ............................ TTTCCCGCCGCACGGCTTACACAGCAACCGGA 36421 28 100.0 32 ............................ AAGAAATTTTAGCAACCGGGTTCCTGACGTCA 36481 28 100.0 32 ............................ CCGATTTATTAGTGCTAATCAGCGGTGAAATA 36541 28 100.0 32 ............................ TTTATGCGGCTCGTTGACGAGTGCAGACCTGC 36601 28 100.0 33 ............................ CGTTAACGTTCCGCCAGTTAGCGACAATTTAGT 36662 28 100.0 32 ............................ ATGGTGGCGCGCCATACATGATGGTGGGTGCG 36722 28 100.0 32 ............................ TTGAAACGGTTGAGCCATTGCAGCGGCGTAAA 36782 28 100.0 32 ............................ AAATAAAAGAATCAAACCTCTGGTGGTTAAAT 36842 28 100.0 32 ............................ AGCGGTCAATTCGTTTGTGTTGGCATCATGAT 36902 28 100.0 32 ............................ ATCGACCTGATCCAGTTTACGCACCTTGACTT 36962 28 100.0 32 ............................ AATGGCTGTGGAGCTTACTGACATCGCGTACT 37022 28 100.0 32 ............................ CCTCCGCTAATCGAATTGTGCATGAGCCTCCG 37082 28 100.0 32 ............................ GAACGGGCATGCGTCAATTTTCACATAGAAAT 37142 28 100.0 32 ............................ AACACTGGCGACCGGTCAGCGGCAACCAACAC 37202 28 100.0 33 ............................ CTCCAGACCTCGGCATTTAAGGAATGACTATGA 37263 28 100.0 32 ............................ ACGCTCACCACGCAAGGTGTAAATTAAGCGTA 37323 28 96.4 32 ...........T................ ATCATGCGGCCACGTACCTGCTGCCACATAAA 37383 28 96.4 32 ...........T................ AAACAATCCAGAGCAGCTTCATATAAGTCTGT 37443 28 96.4 32 ...........T................ AATGGCTGTGGAGCTTACTGACATCGCGTAAC 37503 28 100.0 32 ............................ CCTTAACTATGTGGTTAATAACTCTAATATTT 37563 28 100.0 32 ............................ AGCAAATAGCATGATTAGAAATCTGTTTATTT 37623 28 100.0 32 ............................ AATGGTTCCAGCAGCAGTGACACGATATGTAT 37683 28 100.0 32 ............................ AAGCCGGTAAACTCAGGAACCAGTACGCTTGC 37743 28 100.0 32 ............................ AAAGCATGAAGAGTCAGAACCGGGCAGAAATT 37803 28 96.4 32 ..........T................. AAATACCTTGGCATGAGCCGCAACGCCGGGCA 37863 28 100.0 32 ............................ AAATATAAAAATGGAAGAACCAGAAACCAAAA 37923 28 100.0 32 ............................ TTGCTCTGACAAGATTGCGCGGCCCGAATCAA 37983 28 100.0 32 ............................ ATTCCAGAAGATGGATGATGGCCGATACCAGA 38043 28 100.0 32 ............................ CAACGCAAAAGCCGCTGGCACTGATGGAGTAC 38103 28 100.0 32 ............................ TATGCGGTCTGCGTAGCCGTCGAACTGATTAT 38163 28 100.0 32 ............................ GTAGCGCCAGTAATACCCCACGCATAATGCGC 38223 28 100.0 32 ............................ GGAAGATGGCAGAAAGAATATCCATTCACCCT 38283 28 100.0 32 ............................ TAATGGCATGAATACGACACCGAGCACCATTA 38343 28 100.0 32 ............................ ATAACGGCGGAAAGTGCTGTCCGGGGAGTAAC 38403 28 100.0 32 ............................ GTGAGTTTCAGCTCTGCAACAGTGAACTGCTC 38463 28 100.0 32 ............................ CACTCGATTGAAAAGATTTACTAGCGACGAGA 38523 28 100.0 32 ............................ AGCAATAGTGCGGGCAGTTGCCAGTTTTGTCG 38583 28 100.0 32 ............................ AGTCAGCATGAGCAGGCGCACAAGCTTCGCCA 38643 28 100.0 32 ............................ ATCTTGGTACTGGCGCTGAGTTCATGTTTTAC 38703 28 96.4 32 ...........T................ ATAATTGTCTCCGTTGGTTGGCATTATCACAG 38763 28 96.4 32 ...........T................ AGAAAGGCGGCGTTCTTTTTTATGTTGTGGTT 38823 28 96.4 32 ...........T................ GCTTAGTGCCATTAGCGATATCAGCACGAAGG 38883 28 96.4 32 ...........T................ AGTACGCATCCTTTGTGCTCGAGAGCTGCAAA 38943 28 96.4 32 ...........T................ GTAACGGCTAAATCTGCAACTCTATCTATTTC 39003 28 100.0 32 ............................ CGAAATAGCGTGCAGAACCGTCCCAGCCCGAG 39063 28 100.0 36 ............................ AGCAATAGTGCGGGCAACCTAAACCGTAATCCTCAA 39127 28 96.4 32 ..............C............. AATGGCAAATTAGATGCAAGTCGGGCGTTAGC 39187 28 100.0 0 ............................ | T [39208] ========== ====== ====== ====== ============================ ==================================== ================== 59 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGATTTAGTCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGAAATTATTCCGATACCGACACGGATTCAATATCGGGTCGTGCGCCGTGTGCAGGTGAAAAGTAATGTGCAGCGGCTACGCCGTCGGTCTGTCAGTAAAGGCTGGCTGACGGAAGAAGAGGCACTATTGCGGATCCCTGATAATCGCGAGCAGCAGTGTAATTTGCCTTTTTTGCGCTTAAAAAGCGTATCCAGCGCGCAAAGCTTCTTGTTATTTATTGATCAAGGAGAGTTACAGGAAACTCCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTACCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATAGAGTTGGCCGAGAAGATTAAAAAAGCCTTTTTTATGATTTTGGTGGGTTATTTTATTATAATCATTGTGTTACTCGTGTTTCATTACT # Right flank : ATCTATCCGACTTCTTATTTCTCCTTTCTCGCTTCATACCTCCAAAGAGGTATATGTTTGATTTTATGCAAAAATTGTTTGGTGCTGAGTTTTTTTTGAGCTGGTTCATAAAATCAAATACCCACACAAAGAATATTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCGCACTGGGTAAATCTGTCATGGGTATCACTGAGTGTCTTACATTCCGGTGCGGGTTTAAAAATAAAAAAATGACTGTCTGGTGCAAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTATTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAACGATAAGTTCGCGCAGCAGCATGCGGATCAGTTCACCTCTTGGTTGAAAACCAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //