Array 1 212995-212827 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCFS01000002.1 Helcococcus ovis strain KG-36 NODE_2_length_225950_cov_31.910859, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 212994 36 100.0 30 .................................... GACAATAAATGTATTTATAAGATAGAGGGT 212928 36 100.0 30 .................................... CAACAAGCAATAAGAATGATGGCGATAATG 212862 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTGAGTATGATGTAATTTCGTATAGGTATTAACC # Left flank : TTTTCATAATACTCTTTTATTTCTTGTACATTCTCATAAAATGTTTTTCATTCGAACTGTTAGTAAGAAAATTATTCTTAGCATATACACCTGGTATAGTAAAACTTAAGGTAAATATAAGCACACTTAAAAACATAGCTATTTTCTTTTTTAATTTTGTAATATTATTCTTCCTGTTTTTTTGTTTTTATACTTATATATTATGATACTTTATTATATATATCAACGTTTTCTTATTCACTATATAATTTAAAGTAAATACACCCTTATAGGATAGAGACTGAAGGTCGAAAATCCATAAGGGTGTATTTGTGCTATTGCAAAGAGCTAGTAAATAATATATACTTTATTTACTAAAAAAAAGGAGTTTAGGACTATGGCAAATGTATATTCAAGACAAACAAAAATATCAAATGTAGTTGGTAGAAGTGATTACATTTCAAATGAAAAAAGACAAGAGCATATAGTCTTACATTCCAAAAGTAGTGTCTTTGATTGGA # Right flank : TAATAAGATAACTAAAGGAGAAAGTCCGATAGAAATAGTAAAAGCAACTCACCCAGTTGTTTCGGAATTAACTACACAGGTAGTAATCAATAGTATTCCTGAAGAGGAACTATTAGAAATAAATGTAGAGGGGGAATGGTATGAAGTGCCAAAAAACGTGAAGATACAGGAATTAGCATTTGTATTGGCATCACACCTAGATGCCATATTGAGAATTAAGAGTGAGCGTATGAAAGAGAGTAGACAATTTACTACTGTAATGAATACATTAGCTAACAGGTAGTCTGAAATCTGGAGTCACCAAACAAAACAGAAGGGATAAAAAATAACATAGAATATAAGAAGAGGATAAAATTATTATGTTTAATAAAATTGAAAGAAAACCAAAATGTGGAATTAGAAAATTAAAAGTAGGATTTGTGAGTTGCTTATTAGCATTTGGAATCTTAACAAGTGTAGGAAGTCCTTTAATAGGAAATACAGTAGTAGAGGCAAAAGCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTATGATGTAATTTCGTATAGGTATTAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 216234-214480 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCFS01000002.1 Helcococcus ovis strain KG-36 NODE_2_length_225950_cov_31.910859, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 216233 36 83.3 30 AC....CA.G.G........................ CCATCTCTTATATATTTGTCTCTTGCACCG AC [216224] 216165 36 100.0 30 .................................... AGCTGGAGCGGCGGATGCTTCAAGAGGACT 216099 36 100.0 30 .................................... TAGATGAGAGACTATTGCCCGAATGGTCTG 216033 36 100.0 30 .................................... CTGGTTTTATGTCTATATTTTTTAGTTTTG 215967 36 100.0 30 .................................... ATATCAAGTCATCACATGGAAATGATATAA 215901 36 100.0 30 .................................... AACGAATTAAAAGCTTTAAAAAGTGATGTT 215835 36 100.0 30 .................................... CAAAAATCATGTTAAGATAGTTGTAACAAA 215769 36 100.0 30 .................................... AGAGTACTTAGAAAGCATTGTTAAAACTTA 215703 36 100.0 30 .................................... TGTAGGTGAAAATATATGCCGAACTTATAG 215637 36 100.0 30 .................................... TTGTTTTGCATAAGCATCAATATCTGTTCC 215571 36 100.0 30 .................................... TTGTATATTATGCTAACAAAAAACATAAAT 215505 36 100.0 30 .................................... TTGGCAGATATATATCTATCAAATTGCGTT 215439 36 100.0 30 .................................... TTATACAATCATCAAATAAAAGGGTTAGAA 215373 36 100.0 30 .................................... ACATCTACTCAGTAGGTGTTTTTTCATTTT 215307 36 100.0 30 .................................... ATTTTGTTTTGCATAAGAATCAATTCTTGT 215241 36 100.0 30 .................................... TTATCAAATAAAAATAAAGCAAAGTCTGAC 215175 36 100.0 30 .................................... ATTATGCCTTATACTTTCGTCATTTATTAA 215109 36 100.0 30 .................................... TTTGATATTGCAACTAGGACTAAGCTTGTA 215043 36 100.0 30 .................................... TTTTGATACACAAGTGTGTCATCTACTTCT 214977 36 100.0 30 .................................... AATAGGAAGCAGAATAAAAGAAAAAAATAT 214911 36 100.0 30 .................................... TATGACTCTGCAACATTTTGGAATAGAGAA 214845 36 100.0 30 .................................... AATAGGAAGCAGAATAAAAGAAAAAAATAT 214779 36 100.0 30 .................................... TCTTGAAAAGTTACAAGTCATGATTGAAGC 214713 36 100.0 30 .................................... CGCAGAAAGCAAAAAAACATCAAGTTACGA 214647 36 100.0 30 .................................... TTTACAATTTACATAAAGCTTATCTTTTAT 214581 36 100.0 30 .................................... AAGTTAAAAGGTAGCGAATATGACGAAGTG 214515 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.4 30 GTTTGAGTATGATGTAATTTCGTATAGGTATTAAAC # Left flank : AAATAATTCTGGTGAAAATATGATTAGATATACCTTAGATGCAAGGATAGAAGATGATTCATCGGATGGAGTAAATGAAGTAAGATTATTTTGTTTTGATTTATTACTGTTAATGTGTAGAAGAAGCAAAATGAGATTTTTAGCTCATGATAGTAGATTATTTGCAAACATGGATCCAAGGCAAAGAGAAATGCTTTTACGAATAGCGTACGATGTTACTATAGATTCTGAGTTTCAATATATTTGTTCCATGAATGAAGATACTATAATGTCTTTTAAGGATTTAATGTCAATTGAGGAGTATAAAGAAATAGTAACGAATAATATTATTTTAGAATTAAATGATGATGCATCTGAAAGTAAACTACTTGGTATTCAAGTAGATTTGGATTTAGAAGATAAGCACAAAAATATTGATAATATGAAATAAGTTGTGTAAAAGAGAGGATGTTCAAAAACATTCTCTCTTTTTGTAGGTGATTGAATAAAATGTATCCAAT # Right flank : CGTGAAGAAGTAATCGAGAATATAAATGGCCAGATTGATGTTGAAGAATTATAAAAAAAAATGAAGAGAGGAAATAATCTCCCTTCATTTTTACATTACTTTTATAAAAATATTAAAAAATAAAATCCCTAACAAAACAACTAAAGGTGCTGAAAACACTATCAATTTAATATTACTTTTAATTTCATCATCTTTAGAATTTTTTTTAATAATTAAATTATAAATTATTAAAAAAGATATATTTACGCTTAACAATATGGCTGTAAAGGTTGGTACTATGTCTGTAAACTTGTTTCTGTCAATAATAATCCTAAAAATAAAAACAAAAAATAAAAATATATTAAAACTCAATAATGTTTTTTTTATATCTAATTTTTTTATATTTATATGTTCATTTCTGTTTTTTTTCATTAGTTTCTCCTAATATTAGCAATAAGTTGAAGCGTAAGTTGTACCTAATGTAAATAATAAAGCTACAGCTCCCAATCCTACAGGTCCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTATGATGTAATTTCGTATAGGTATTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 8129-7072 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCFS01000009.1 Helcococcus ovis strain KG-36 NODE_9_length_58325_cov_60.603492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 8128 36 100.0 29 .................................... GCTTTTATGGGATAAGGATAGCTCGAACA 8063 36 100.0 28 .................................... AGATGATACCAAAATTTAGAGCGTGGGA 7999 36 100.0 28 .................................... AGATGATACCAAAATTTAGAGCGTGGGA 7935 36 100.0 28 .................................... AGATGATACCAAAATTTAGAGCGTGGGA 7871 36 100.0 27 .................................... GTTTGACTTCTTCAACCGAATTGTCGC 7808 36 100.0 27 .................................... AAGTATTTTGAATATTGCCATATAGTC 7745 36 100.0 28 .................................... TGAAAAAAATATAGGTATTGCAACAGTT 7681 36 100.0 26 .................................... AATATAGGAGAAAATTTTGAAGAAAC 7619 36 100.0 28 .................................... GAAATCAAAGTGTATTTGCCAAACTTCG 7555 36 100.0 29 .................................... GACCGCTGTAAATGATTTTTACACACAAT 7490 36 100.0 27 .................................... TTATATAGATTAGGCTCTTCCACAGAA 7427 36 100.0 28 .................................... AAAATAAATGAAAAATATTTTAAAATCG 7363 36 100.0 29 .................................... CGCCATTATTCTCGATATTGTGTCAATTA 7298 36 100.0 28 .................................... ATTGATTTTTATACCCTAATCGACTAGC 7234 36 100.0 28 .................................... AGCTATAAGAGGAAGTTTGAAAACCGCA 7170 36 100.0 27 .................................... ATAATAACAGCCCAGTATCATTTGTAC 7107 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 17 36 100.0 28 ATCTACAATAGTAGAAATTATTATGTATTCTTAAAG # Left flank : GACAATAAGGATGAAGCGGTGGAGCATTTACTCCGATTTTAATTTTATCAATAGGAATAATTCTTTGGCCGTGTTCCCTGCATATTTTTGAAGTCCTTTTATCAAGTGTGGCTTCAAACTTTTTAGCAAGTATTCCACGTCTTTTACTATCATCTAATTCTGCTGTATTTACCACGTATGATGTTAATATTCAAGTTCATGTTGCTCTCGCATTTAATTCTAGTTTATCAGTCCACTTTCTATCGCATTTATTTTATATTTTTCAGATATTTCCTATCCTAATTTTCCCTTGTATACCTTAATCCATACAATACAAGACTTCTTCTGTTTTTTTTTTTAAACATTACCATTGTTAAAAACTTTAATATTTTTCTTGTTTAGATATAGATTTATCATTCAATTATTTCATTCGTTCGTCTATCTAAGATTTAACTCCTTGATTTTTTTACGATATTTTTATGTATTATTAAAGAAACAGGAATGGGAAGCGGCGACTTCAA # Right flank : AGCTAATGCATATATATTCAATAAAAGTGCTCTTATTGTCACTAAAGTTAGTATTGAAACGCATAAACTCTTATTTTTCGAATACATTTTTGAAATCCTTTAAGAATATTAAAAATTAAGTTATAGGTTTTACACTATTATTATATCATCATTTTCATGAATTGGATAGCCATAATTAATAATACTATCTTTATCTACTTTATATATCATTACACTATCAGATTCCTTAAATAATTTTTTGAATTTATTCTCAATATCCGATTTGACTAAGTTTAATATCCTCTCTGAATTTTTCACACAAAATATTGAATATTGTATTCTGTATCCATATTTACTTAAATATTTAGAGAATTTAGTTCTAACCTTATCATCTTTTATGTCATAGCTAACAAAAATCATAATTTACCTACTTATATTTATATATCGGAAATTTTGATATATCTTTATTTTTCATAAATGCTCTATAATAATTTTGTATATACAAAAACATTTCTTCTCTA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACAATAGTAGAAATTATTATGTATTCTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 18113-18874 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCFS01000009.1 Helcococcus ovis strain KG-36 NODE_9_length_58325_cov_60.603492, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18113 36 100.0 30 .................................... AAATGGAAATTGATGAAGTAATAAACATGT 18179 36 100.0 30 .................................... AATTAACATTATAAATTTTACATAGCTCAA 18245 36 100.0 30 .................................... TTATCAAATAAAAATAAAGCAAAGTCTGAT 18311 36 100.0 30 .................................... ACTTATCCAAGACTGACAATGATATTGAGA 18377 36 100.0 30 .................................... AAGAATGTGGAACGTTTAACCGTTGTTTCA 18443 36 100.0 30 .................................... ATTAATTGGAGATATGAAATAAGGTATAAA 18509 36 100.0 30 .................................... TCAGAATGAAAATACATCAAGAGCTAAAGC 18575 36 100.0 30 .................................... AGCAATTCAACTAATGCAAATCACTCAAAG 18641 36 100.0 30 .................................... ACTGTAGCCAAATTGATGGGTGATACTTTA 18707 36 100.0 30 .................................... CTTAAAAAGCCGTTAAAAACGGTTGTTTAT 18773 36 100.0 30 .................................... TGCTTATCATCAATCGTATACGGTGTTGAT 18839 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTGAGTATGATGTAATTTCGTATAGGTATTAAAC # Left flank : AAAATAATTAATAAAATAATTAAAGATTTATTTTTATTATCAAAAAGTGAAATATTTTTAGATAAATACTATCAAAATAATATAATGTTAAAAAACTTTATTTCAGATTTGATATTTGAATATGAAATACCATTGGAAATAGATGATGAAGTAGATTTTACATATATATTAAAATCTTTTGGAATCAAAATAAATAATGAATATAGTTCATATATTGAAAATTTGATTAATTATTTAAAATTGTATTTAGAAGTTTTTGGAGTAGATATTTTTATATTTATAAATTTAACACAATTTTTGAGTAATGAAGAGTTTAATCTATTATTTGATTTTATAATGAAAAATAATATTTTGATTATAAATTATGATAAGATATATATGAATAATAAAATTATAAAAAATCAAATTTTATTTGATAATGATTTGTGTAGAATTTTATAATTTATACCATATATGAGATTACCACTTGTGATGGAGTCGATACCACTCATGGATTTGAG # Right flank : CAGAATCAATAAAATACTGCAAGCATGACGTGTTTGAGTATGATGGGCTTGAGATATAATAGGGATACAGAGAAAAAAGCTTGATAATTCGGGGCTTTCAGCACTGTATCCCTATTTTAAGAATCATAGAAATATAATAAAATATTGTAAAAGGAGGATTCTATGAGAGCAAAAAATATTTCAAGTCAATATATAATTCCTTCTGCTTACAAAGAAGGTGAGAATAAATGAGGTGGGTAATAAAAATAATATTGTTTCCATTCAGCTTTCTACTTAGTGTCCTTACTGCCTTTCTGACATTTATACTTGGCATAGGAACAACTATTCTGTATTTCTTAATGCTGATGTGTATCGTTGCAGCAATAGGATCATTTATGCAAAAAGATATATCACTTGGCATTGAGGCGTTGGTATTAGGATTTTTGTTAAGTCCTTATGGAATACCGATGGTTGGAGCAGCAGTTATAGCATTTCTTCAAGGAATCAATGAAGCAATAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTATGATGTAATTTCGTATAGGTATTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //