Array 1 338446-343695 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNXM01000002.1 Zavarzinia compransoris strain DSM 1231 Ga0244521_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 338446 36 100.0 30 .................................... CCATGGGTGGATTACTTGCCCTTCTGACCG 338512 36 100.0 30 .................................... CAGCAGCGGCAACGGCGCCCAGATCGGCAG 338578 36 100.0 30 .................................... CCGAAGCCGCCCGGGCCTCTGCGCTGGCGC 338644 36 100.0 30 .................................... CTAGACCGGCGCTTCACGCGCCAGGCCGGG 338710 36 100.0 30 .................................... ATAAACCGACCCCTCGTCACCGACCAGATC 338776 36 100.0 30 .................................... GAAATAGATGTCGGAGGCATTGGCGAGCAC 338842 36 100.0 30 .................................... AGGCCGCGCAGATCGCCGCGCGTGGCTTCA 338908 36 100.0 30 .................................... CAACCTGGGGGACGATGGATTGGTGGTAGC 338974 36 100.0 30 .................................... ACGCAAGGCCGACAAGCTGTCCGAGCTGAA 339040 36 100.0 30 .................................... CGTTACGTAACTCGAAGTACGCTAGCGGGA 339106 36 100.0 30 .................................... GGATACGGAAGCCCTCGGCGGCGGCGAAAT 339172 36 100.0 30 .................................... AACGCTCTCGAACTGTTCATTTGCCATGTT 339238 36 100.0 30 .................................... CAGCCGCCCCTTTTCGTCGAGCCCCGGTTG 339304 36 100.0 30 .................................... AAACCCCAATAGGAGTCGTTGCCGTCGACG 339370 36 100.0 30 .................................... CGCCGTAATCGCCGAAGCGGATCACGCTGC 339436 36 100.0 30 .................................... AAGCCGCGCGATCGAGAAAGCCAAGCGCGA 339502 36 100.0 30 .................................... CAGCCGATGGTTTCGTAGCTGGCAATCAAT 339568 36 100.0 30 .................................... ACCGCCGCCGGCGAAACGGTGGGGGGGAAG 339634 36 100.0 30 .................................... TAGAACTATCAACAATAGTATTTCCACTAA 339700 36 100.0 30 .................................... ACCTCGGGCGCCATGACCCTCGCCGCCGGT 339766 36 100.0 30 .................................... TACCTCGAGCGGCAGGGCCTGATCAGCGTG 339832 36 100.0 30 .................................... CAGCGCTGCGGCTTGGTCCTGTATCAGCTT 339898 36 100.0 30 .................................... TCGGCCCAGCAGGTGCTGAGCGACCTGCGC 339964 36 100.0 30 .................................... CTACGATAATCGGCCAGCAGCGCGCGGTGG 340030 36 100.0 30 .................................... GATGCACACCCAGGACTGCCCGGTGCCGCA 340096 36 100.0 30 .................................... GTCGATGGCGACCAGGTCGCTCCTGGACGC 340162 36 100.0 30 .................................... GGCGGATCGCGCGATCGCAAAGCGTGCGGA 340228 36 100.0 30 .................................... CGGCAGCGGGAGCGGATCGCCAATGGCGAC 340294 36 100.0 30 .................................... CATGGTCGCGATGTCCTTGCCCGCCAGCAG 340360 36 100.0 30 .................................... TGCCGTTCGTGTCGCCAGAAAACGATCAGA 340426 36 100.0 30 .................................... CTTGCCGGTCAGGGCAAGATCGGCTTCCAT 340492 36 100.0 30 .................................... CGCCCGCTCCAGCGGGTGCATCCGGGCCCC 340558 36 100.0 30 .................................... CAACAGGCGCCGCGTTCTACGGCTCCGGCG 340624 36 100.0 30 .................................... CGTAACGATCGCGGGTTCCAGTGCGGGGAT 340690 36 100.0 30 .................................... GAGGGTTACACTCATGTATTTTTTCACGCC 340756 36 100.0 30 .................................... GAAGCAAGATCGCACATCGGCTCGCCAGAG 340822 36 100.0 31 .................................... CGAGCCAACCTACGCCGACCTTGACGGAATC 340889 36 100.0 30 .................................... GAGGCCGTCGAGCCATTCAGAAAACGCGGA 340955 36 100.0 30 .................................... GCCGAGACCTTCGCATCGGTGAAGGCCTAT 341021 36 100.0 30 .................................... GGCATCATGCAGCGCGGCGCCCTGAAGGCG 341087 36 100.0 30 .................................... CAGGGAAGCCGTCGTCGACCTAGCGCAGGA 341153 36 100.0 30 .................................... TTCTTTTAAGTTACGTCCTTTAGACTTGAA 341219 36 100.0 30 .................................... CGTACTAGCCGCCGAAACGGCAATCGGGCT 341285 36 100.0 30 .................................... GGACTTCTGGCGCGCCAAGCCCGGCAAGGA 341351 36 100.0 30 .................................... GCTATGGCGCCTTCGGGCGCCAGGTCAAGG 341417 36 100.0 30 .................................... CGCGGGGCCGATACCATCGACGAAGCGCCG 341483 36 100.0 30 .................................... GAAGAAGGCCGAGGCGCGGCGCGACGGGCG 341549 36 100.0 30 .................................... AATCAGTCGGTCGCATCGTCGAAGCCCTTG 341615 36 100.0 30 .................................... GGCGGCCTGATCGTGGCCCGATGGTTCGGG 341681 36 100.0 30 .................................... AAGACGATCACCACGGGCGTGAAGGCAGCG 341747 36 100.0 30 .................................... GCGCCGCTTCATCGAAAACGAATTCGGCTA 341813 36 100.0 30 .................................... TGAACGCTTGCCCACATTGCCTTTCGTGTC 341879 36 100.0 30 .................................... TGGCGCGGATTCTGGTCGCAAGGCGACGGC 341945 36 100.0 30 .................................... ACCGCGGTCGGCATCGATATCGATCCGACC 342011 36 97.2 30 ...................................T GGACGAGCGCGTACTGCGCACCTTTTGCGG 342077 36 100.0 30 .................................... GCCTGCGCCTCTCTTGTTCAATCTCGTCTT 342143 36 100.0 30 .................................... GCTGGAGAGCTTCAAACGCTACAACCTGCG 342209 36 100.0 30 .................................... GTGCGGTAGACCATACCTATTTCCCAGCCG 342275 36 100.0 30 .................................... AAAAGCGCGCAAGTATTTGCTTGATCATAT 342341 36 100.0 30 .................................... TCGAAGCCCTGCGTGAACGGTTGCGCGACG 342407 36 100.0 30 .................................... GACAGGGCTCGCGGCGAGACCGTGGCCATC 342473 36 100.0 30 .................................... CTGGGCTGCGGCAAGACGCCGACCGCCTGT 342539 36 100.0 30 .................................... TACGTTGAAGAACGCGAGAAACCCGCCCTC 342605 36 100.0 30 .................................... ATGTTAATATGTTAGTTGACGCTCTCCCCC 342671 36 100.0 30 .................................... TCCTTCCACTCGCCGCTGGCCTTGTCCTTC 342737 36 100.0 30 .................................... CGAGGTTGCCGATGGCGCGACCTGGAAATG 342803 36 100.0 30 .................................... GCGTCTGCAACGCCGCCAGTGCCGGTCTCG 342869 36 100.0 30 .................................... CCAGCAGCGACTGAGCGTGGCGCATCGCTT 342935 36 100.0 30 .................................... GCCACCCGGAACCGGGCGGCACTGGCGATG 343001 36 100.0 30 .................................... GCCAAGGTCCAGTGCTGCGCGAAAATCGGC 343067 36 100.0 30 .................................... GGTCAGGCAACCCCGGTCGTCGCGGCCGCA 343133 36 100.0 30 .................................... CGCCATGCCCTTCGCCCGTCCACGCGCGAT 343199 36 100.0 30 .................................... TATTCATTGCACATGCCTGCACGATAGCCG 343265 36 97.2 30 ........................C........... TGCGCCTTCGACATGGCCTCGGCGGTTGCC 343331 36 100.0 30 .................................... CAAGTCCGGCGCTTTGCCGAAAAGCTCGAG 343397 36 100.0 30 .................................... CCCATCTGCGAGCCCATCACGACCACGACC 343463 36 100.0 30 .................................... TTGCCCCACTTTCAGCCGTCATGCGCTTTG 343529 35 97.2 30 .......................-............ GCCCCAGGGGAGCGGCGGCGTTATAGTCGC 343594 36 94.4 30 ...................C...............T GCGAGCCGGGACGAGGTGCATCGCGAGTGC 343660 36 75.0 0 ..........C.CA.CAG...AC...........G. | ========== ====== ====== ====== ==================================== =============================== ================== 80 36 99.5 30 AGTTTAGCGGTCTGGTGACTGGGGTCCAACCGCAAC # Left flank : CGTCGCCTCGCTGGCCCGGGCGCATGCCGGCGAGGGCGAGGATCTCGCCCTGCCCCTGCCCCGCTTGCCGCTGGAGGGCTGATGTGGACCAAAGCCCGGCCCTCAGCGCCTATCGCATCATGTGGCTGATCGTCCTCTTCGACCTGCCCGTGGGCACGAAAGCCGAACGCCGGGCCGCCACCCGGTTCCGCCTGGGCCTCCAGGACCTCGGCTTCGAAATGTCGCAATTCTCGGTCTATCTTCGCTTTGCCGCCGGCAAGGAAAAGGCCGAAGCCCTGTGCCGCCAGATCGAAGCCCTGATGCCGAAGAGCGGCAAGGTCCACGTCGTCCAGATCACCGACAAACAATATGAGATGATCCGCACCTACCGGGGAAGAAAACGTGAACCAGGCCCGAAAAACCCGAATCAACTTGTCCTGTTCTAGCCCCGCCACGGCCCGGCCCCCGCCTCCCTCCAGAAAGAAAAAAGGCCCTGAAATCAGGGCCTTAGTTCATATCGC # Right flank : CGCGCCGTTGTGGCTTTCCGAGGTCCCGGCGGCGGGGGGCCGCCGGGGTCGGTTGGTTCATGCGGCGGGGGCGAGGCCGGCGGTGGGCAGGAAGTGGGGCAGTTGGGCGATGCGGGCGATCCAGGCGCGGATGAAGGGATAGGGGGCGAGGTCGATGCCGCCCTCGCCTGCCAGGGCGACATAGGGGAAGACGGCGCAGTCGGCGATGGTCGGGCGGTTGGCGGCCAGCCAGTCGCTGCGGACCAGATGGGCTTCGAGCAGGCCCAGAATGCGGTCGCCGGTGCGGCGGGCGGCGGCCTCGTCCAGGGCCATGCCGAATTTGCGGATCAGGCGGGCCGTGCAGGGGCCGTGCTGGATTTCATTGGCCGCGGTCGACAGCCATTGGACGACCTCGCCCTGGCGGCAGGCATCGCCCGGCCACCAGGCTTCGCCGCCATAGCGCCGGGCGAGATAGACGAGGATGGCCTGGCTGTCGCGCAGCACCACGTCGCCGTCGACCA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTAGCGGTCTGGTGACTGGGGTCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 141321-142386 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNXM01000001.1 Zavarzinia compransoris strain DSM 1231 Ga0244521_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 141321 28 100.0 33 ............................ CTGTTCGTGCCCGGCCGGTCCGGCACGATCGTT 141382 28 100.0 33 ............................ CCCCCCGTCGCGGGGGAAGCCGCACGGCATCCT 141443 28 100.0 33 ............................ CGGCGAGGAGACAATCGCCAGGATCGCCCGAGA 141504 28 100.0 33 ............................ CGAGATGGCGCAGGCTGTGGCTGCGGCGATCGT 141565 28 100.0 33 ............................ CCCCGCGCATGACCGCGACCGAGGCCCTGATCC 141626 28 100.0 33 ............................ CTACGGCGGGGTGGACGACATGGGCCGCCCGCT 141687 28 100.0 33 ............................ CCGCTGGGTCTATCCCAACACCTTCGACTGGGC 141748 28 100.0 33 ............................ TTCTCCCACCCCATGGACGGGCTGCAATACGCC 141809 28 100.0 34 ............................ CGGCGTCCGGGTGTCCTTCCCCTACCTTTCAGGG 141871 28 100.0 33 ............................ CCCCAGGCGGGCAGCGCTGACGCAGGGGCGACA 141932 28 100.0 33 ............................ GCTACCCCGGCGGCGTCCGGCGGCTGACCCCGC 141993 28 100.0 33 ............................ CTGCGCTGACTATGGGGACGCGACCACCCGGAA 142054 28 100.0 33 ............................ TGTCAAGGCGGTGCCGCAGACGGCCTTTGGCAT 142115 28 100.0 33 ............................ CCGGCGGGTGGAATACCGAGGTTAAGGCGGCCG 142176 28 100.0 33 ............................ GTTGTAGCCGGCGTTTCGGGCATCCGCGTCGGG 142237 28 96.4 33 ................T........... CATGGCGCGCATCGGAAAACGCCTACCCCGCGA 142298 28 96.4 33 ..................T......... CTGATTGCCCCCGACATGCAGGCGCAGCAGCGG 142359 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 18 28 99.6 33 GGCTCCCCCGCATACGCGGGGATGGACC # Left flank : GGAACGCCACGTCCGCCGCCAGATCACCCGCCGCCTCCAGGCCGACAAGGTCATTCCCGGCATGATCGACCGCATCAAAGCCCTGTTCGACCCCGCCGCAGGCCGACCGCCGGCGCCACTCCCGGCAGCGGACCGCGGTTCGGAAGAGGATGGGGCGCCATGGTGATCGTCGTCACCCGCGACGTCGCGGACCGCTTCAGGGGTTTCCTCGCCTCGGTGATGATCGAGGTCAGCCCGGGCACCTATGTCTCGCCCTCGATGACCAAGGGCGTGCGCGAGCGGGTCTGGGCCGTGCTCGACGGCTGGTTCCGGGAAATCGGTGGCGGCGCCATCACCATGTGCTGGCGCGACCGCACCCAGCCCGGCCATCTCGGCCTCTCGATCCTCGGCGCCCCGCCTTGCACCCTTCTGGACGCCGACGGTGTCTACCTCGGCTTTCGCCCCCCGGCATCAACTGCTCTTTGACATTGTCAAACGAATTCAGTCTCTTAAATGCAAGA # Right flank : CCGAGGCGAACGACAAGTCCTTGCGCGGGGCGAGGTCACCCAGCCGGTCGGTCAGCACCGGGATGTCGTCGTCGAAGTTGACACCGGCCAGGAGCTTCCCCACATTGACGGTGGAGGCCGGTGCCGGGCCGGGATGTTCCACTGCGGCGCCCGCGGCGTCGGATGTCACCCCATTAGTGGCGGCGCCGGCCTCTTCCACTTCCGTCAGTCGATGATCATAGATGCGCCGCCCGGTCCGGGCCTCCTTGACCGTGAGCTTGACCCGCCACAGCCGGCCGTCGAAATGCAGCGGGGCATAGAGACGGTGCATGGCCAGGGGCTCCCCCGCATACGCGGGGATGGACCCCTGCCCCGGGCGAAAGCGCTGGCCGAAATGTGGCTCCCCCGCATACGCGGGGATGGACCCCGGGCCGCACTGGGGATGTCACCCCTGGCCGCGGCTCCCCCGCATACGCGGGGATGGACCCACGCGGGATGTGACGATCTTGGCCTCGGGGCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCATACGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 142703-143304 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNXM01000001.1 Zavarzinia compransoris strain DSM 1231 Ga0244521_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================================================================================================================================== ================== 142703 28 100.0 32 ............................ CCTGCCCCGGGCGAAAGCGCTGGCCGAAATGT 142763 28 100.0 33 ............................ CCGGGCCGCACTGGGGATGTCACCCCTGGCCGC 142824 28 100.0 33 ............................ CACGCGGGATGTGACGATCTTGGCCTCGGGGCG 142885 28 100.0 33 ............................ TCGATCAAGCTGACCATCCGCCCCAGTGTTGGG 142946 28 100.0 33 ............................ CACGTCGGCACCGCGCCCCTTGTGGCCCCTCGC 143007 28 100.0 181 ............................ CTGACGGTCAAGGAAACCGTGGCCGGCCGCCGGCTGTGCGATCATCGTTTGACGGAAATGGAAGAGGCCGGCGCAGTCACTAAAGAGGGGGTTGCGACCACCGCGGATGGCGCCGCCCGTCTCGGCCCGGCACCGGCCTCCACCGTCAATGTGGGGAAGCTCCTGGCCGGTGTCAACTTCG 143216 28 96.4 33 .........................T.. TCTTGAACATCAGCATAAGCAACACGACACGTT 143277 28 82.1 0 .............C.........TCG.T | ========== ====== ====== ====== ============================ ===================================================================================================================================================================================== ================== 8 28 97.3 54 GGCTCCCCCGCATACGCGGGGATGGACC # Left flank : CGTTGTAGCCGGCGTTTCGGGCATCCGCGTCGGGGGCTCCCCCGCATACGTGGGGATGGACCCATGGCGCGCATCGGAAAACGCCTACCCCGCGAGGCTCCCCCGCATACGCGTGGATGGACCCTGATTGCCCCCGACATGCAGGCGCAGCAGCGGGGCTCCCCCGCATACGCGGGGATGGACCCGAGGCGAACGACAAGTCCTTGCGCGGGGCGAGGTCACCCAGCCGGTCGGTCAGCACCGGGATGTCGTCGTCGAAGTTGACACCGGCCAGGAGCTTCCCCACATTGACGGTGGAGGCCGGTGCCGGGCCGGGATGTTCCACTGCGGCGCCCGCGGCGTCGGATGTCACCCCATTAGTGGCGGCGCCGGCCTCTTCCACTTCCGTCAGTCGATGATCATAGATGCGCCGCCCGGTCCGGGCCTCCTTGACCGTGAGCTTGACCCGCCACAGCCGGCCGTCGAAATGCAGCGGGGCATAGAGACGGTGCATGGCCAGG # Right flank : TCTTTGCCTCTGCCGGCATTTGCCGCGCAGCCGATGAGGTTTTCTCGCGGCGGGCATATTTTGCTGCTTTGCTGCCGGGAGAGGGGCTCTGATCCGGGGGCCGCGCGGGACTCCTTGGTCAGGCCGGCTCTTCGGGGAAGCGGTATCAGTCGCCGCCGGCCGCCGCCAGTTGCCGGAGGTGGTGCCAGATGTCGTCGAAGACGCGGTCGGTGTAGTGGTCGGGCGGGGGCGGTTCGGCGGCCGATGTGCGCCAGGCTTCGGAGCCGAGCCGCAGGGCGCCCACCGCGATCATGGCGAGCAGGGCCGGTTCGCCGACGAGGGCGGCCCCGCCGTCGGGCGGGGGCGCGGTCCGGGCCGCCAGGGCTTCGGCCAGCCTCGCCTCGAGCCGGGCGTATTTGAGATGCATCCGGGCCCGGAGGGAGGGCGTGTCGCGCACCAGCGCGTCCAGGTCGATTCCTTCGGGGCTGGCCGAGTCCCGGATCGCTGCCGACATCGCCGCA # Questionable array : NO Score: 3.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-2.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCATACGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 107734-105056 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNXM01000010.1 Zavarzinia compransoris strain DSM 1231 Ga0244521_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 107733 32 100.0 33 ................................ GCCAAAGTGCCGCGGAACAGGATTTTCGCCGCG 107668 32 100.0 35 ................................ CGGATTGATTGGGCACGAACAACTCCGGCTGCCGC 107601 32 100.0 34 ................................ AGGTCAGCCAGTGGATCGACGACATCCGCAGCAA 107535 32 100.0 34 ................................ CGCCTGGGGCTGGAGCACCTGCGTGCCCTTGAAC 107469 32 100.0 34 ................................ GCCTCGACCTCATCGGCCCACGCGCGGGCGGCGG 107403 32 100.0 33 ................................ GATCAGGTAAAGGCCGTCGCCGTCGAACCTGTC 107338 32 100.0 35 ................................ CGCCCGGGCTGGCGGCCATTTGAGCCGGCGGGTGA 107271 32 100.0 34 ................................ GCCGCGCTTGCCGCTGCTGCCCAGCCCGGCACAG 107205 32 100.0 35 ................................ TGCGGGCCGCCGCTCGTCCAGGATCGGACGCAGAG 107138 32 100.0 35 ................................ GTCGAGGGTACCGCCGAAGAGACCTTCGTTGCCAA 107071 32 100.0 35 ................................ CAGCGCACGACTTCCCCCCAGCCACTGCTCGCCAT 107004 32 100.0 35 ................................ TGTAAAGATCGGCGCGCCGCCCCTCCCCTCCACAG 106937 32 100.0 34 ................................ CATTTGAGGTATTCGGCAACCGCCTCGATCGCGG 106871 32 100.0 34 ................................ TCCCCGGAACGCTACATCCAGGCGATCGGCGAAA 106805 32 100.0 35 ................................ TTTCATGCCTTCTTGCTCTTCAAACCTAGAGCATA 106738 32 100.0 33 ................................ CCCGAAGTCACCCCGGAGCCGGCCCGATGAGCG 106673 32 100.0 35 ................................ CCGCCGGTCAATCGATGACCAGGCATGCACGAGGG 106606 32 100.0 34 ................................ GTAAAACCGCTACGATGGCGGATCAGATCCACAG 106540 32 100.0 34 ................................ TCAAAGCGCTTGCGCGGCCGGCGGCCGCCGTACT 106474 32 100.0 33 ................................ AACCAGCTTTTCGGCCGTGATCTGGATGGCCGC 106409 32 100.0 34 ................................ TCGGAGGCGAGCATTGCGCCTCACTTTGATGATG 106343 32 100.0 34 ................................ CCGAGGCGCTGGCCTGGACGGCCGACCTCACCAG 106277 32 100.0 34 ................................ CCGAAACCACCCGGGTTGCTTGTCGGGTGATAGT 106211 32 100.0 33 ................................ TTCCGTCGCCCCTTTCGTCCTGATCGAGGGTCG 106146 32 96.9 33 .......................A........ GGATAGAGCAGCGAGGTGGCGTGATCGCCCCAG 106081 32 100.0 34 ................................ TTTGTGGTGCGACCCGACGCCTTGATGCCGTAAC 106015 32 100.0 35 ................................ GTGGATCGAGAAGAAAGAAAGCGCGTAGCTGGGTG 105948 32 100.0 34 ................................ GCCGCCGAACTGGTGGATGGCGGCATAGGCCGCA 105882 32 100.0 35 ................................ GCGCAGGAGCAATCCGGCGCGTCCGGCCGGTGGAA 105815 32 100.0 34 ................................ CAGGAAAACGTGAAGGTCTCGGGGCTGGACGCCC 105749 32 100.0 34 ................................ CACTTGGTCGTCGGCGATCGAGCACTGCGCCCGC 105683 32 100.0 35 ................................ TTCCCCGGAGATAAAGCTAAAGCTGCCGGCGAAAA 105616 32 100.0 34 ................................ CTCGAACACGACGTGTGACACTCCATATTGCAAG 105550 32 100.0 34 ................................ GCCGAAGGATCGTGGGCGGCAATTCATGGTGACG 105484 32 96.9 33 .....................C.......... GCGCTGCCTGCCGGTCCTCAGCCGGCGTCGGGC 105419 32 100.0 33 ................................ CGCGCGCCGGCACCAGGTTAGTTAGGAATTTTC 105354 32 100.0 35 ................................ CCCGAATTCCGCGAGGCCGCGCGCCGGCGCCAACG 105287 32 100.0 35 ................................ TACCACGGCCGGGAGCAGCGGGACGTGGAGACCAA 105220 32 100.0 35 ................................ CCTTGGGATGATGCCTATGGCGACCCCCGCCCCTT 105153 32 100.0 34 ................................ AATCAATCGCCTTGGCAGCACTGCCATGCCCAGC 105087 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 41 32 99.8 34 GTCGCCTCCCGCACGGAGGCGTGGATCGAAAC # Left flank : CCCTCCCTTCATCTGGAAATGACCGATGCTGATGCTCGTTGCCTACGACGTGAATACCGGGGACTCAACGGGATCCAAACGATTACGCCGCGTGGCGAAAGCCTGTCTGGACTTTGGGCAACGTGTCCAGAACTCGGTCTTCGAATGCGAAGTGAGCCCCGCTCAATGGGCCATGTTGCGTGCCCGACTAATCGCCGAAATCGATATCGACAAGGACAGCCTGCGTTTTTACCGCTTGGGCGCAGACGGGAAACGCAGAGTTGAGCACGTCGGCGCAAAGCCCGTCCTGGACCTGGACGGCCCCTTGCTGTTCTGACCACATGCGAACCCGAATCTATCGGCCCTTCGACGCAGGGTTCGCGCACGACTTTTTCTTTTTTTGTTTCAAGTCGTTGGCAATGGACCACCTCGCGCCGACTACCGCTACGACAAACCACCGCGCACCGGTTCGCGCGAAAGCGCCCATTAGCGTTTGTTTCTCATAGTGCTATGGGTATGCG # Right flank : CTTTCAGCAGGCGATTGAGTGCGCCGCAGGAAGGTCGCCTCAGCGATACCGTGATCGAACCCGAGATTTCCTCGTTCACATCGAAATCATAGGCATAGGCCGTCGCCCCCGCGCCGAGCGCACAGACCGCCGTGGTCGCCAGCAGGCGCCGCCAAGCGCGACCGGAACCGCCGCGAGCCCCGTGCTCCCCTTCATCACGTTCATGCCTCCTCCCCCGCCCCGCCCCGCCGCGCCGTCTGTCCATGCAGACGGTTCGCGGCTTTGCTGTCTTTATCGGACTTCTCGACAGGTAATCAGTTCGTTCCCATGCGCCGGATGGCATCGGGCGTGAACTTCGAGGGATCGACGTCCTGAACATTCCAGTTCAGCATCTTTTCCTCGTTCTTCAGGCCGAAGACGACATAGCGGCCGGACTGCAGGTCGTAGGTCGCCTCCAGCGCGGACAAGCAGAGGGGAATGTCGTAATAATTGACGATCGGCGCATCCTGGATCCGCCACAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCGCACGGAGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //