Array 1 29867-31619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFKK01000001.1 Mycoplasma hyosynoviae strain NPL2 contig0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 29867 36 100.0 30 .................................... ATAAACACATTATTTTTCCCTAACCAAACT 29933 36 100.0 30 .................................... TTCACTTTTTAATGATATTTATAATTCTTT 29999 36 100.0 30 .................................... TATTTCAAATTTTTAAAAGAATATCCTTTT 30065 36 100.0 31 .................................... CTACTAACACCAAATGTAGCTACGGAATTAT 30132 36 100.0 30 .................................... AAGCAGCTTTGCTTTACCTTGACCGGCACC 30198 36 100.0 30 .................................... AAAAAGTTCTATTTTCAATTGCTTCTTCTC 30264 36 100.0 30 .................................... AAATTTTATTATTAACATTGCAGTAATTTA 30330 36 100.0 30 .................................... CATATTCACTTATTAAAATATCTTTATTGT 30396 36 100.0 30 .................................... TATCACCAAGCGATTGATTATCAGACTTGG 30462 36 100.0 30 .................................... TAACTTTATTATTAATATTGCAATAATTTA 30528 36 100.0 30 .................................... TAGAAGTTTTAAGAATGATTGAGACCCCGA 30594 36 100.0 30 .................................... CAAGTGTTGGATATATCGGAGTTATCATTC 30660 36 100.0 30 .................................... TTGCGTAGAAAGTTTAAGTTTAATTATTTT 30726 36 100.0 30 .................................... TCTCCTTTTTTGGTGTAGCAGAAACAACAT 30792 36 100.0 30 .................................... AAAAAACACACTTTATCGATTGAATTTAAA 30858 36 100.0 30 .................................... GGTGCAATCTAAAAGTTTTGGAGCCAAGCT 30924 36 100.0 30 .................................... AATATAAAGGCTCTTGTGAAAGTAACATTG 30990 36 100.0 30 .................................... TAGAAGTTTTAAGAATGATTGAGACCCCGA 31056 36 100.0 30 .................................... CAATATAATCAACAATTGAAGTTTTATAAG 31122 36 100.0 30 .................................... TTTTAAAATTAAAAATATCAAACCTTTCAA 31188 36 100.0 30 .................................... AAAAAGTATGAAGACATGAAAGAGATTGAA 31254 36 100.0 30 .................................... AAATTTTATTATTAACATTACAATAATTTA 31320 36 100.0 30 .................................... TCATTTTGATAAAAACCGTTATTATTAATA 31386 36 100.0 30 .................................... TATAAGCCAATAAAATATCAATTTCGTCAT 31452 36 100.0 30 .................................... ATAGCCAAGATTAATGAAGTAGTTGATAAA 31518 36 100.0 30 .................................... CTAAATCTGATATTAATGATTATGAACCTA 31584 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 ATTTTATTGTCGTACAATTTTTTAGTAATCTATAAC # Left flank : CTATTATTAAACACGAAACCTTAAATGCCATACAAGAAAGCTTAAACAGCTTTTTGGGTTTAAACTATGTGAGTATTGATATTGATTTTTCAAAAATGTATAAATTGTTATTTTCTTTAGATGATGATTTTTTTATTACCAAAGAAGTTTTTTATAAATGATTGGATTCTATAAATTCTAAAACTAAAATGACTATTATTATTTCTAATTGACCTGATATTCAGGTGCAAGAATTATTAAAGTATACTAATGCTTTTAACTTTATTATTATTACTAATGAAATTTTTAATACTTGTAAGTCTTTTGAAGAATTGGAATTATCGTTTATATTTAAAAACGATCAAACACTACATCATATTTATAGCAAAACACCTATAGAAACTTGAATCGAAAATCAATACCAAATAAATGAAAACGAATTTTTTGAATTAAAAAATAATAGAGAACAATGAAACAAATGTATATTTGATATAAAAAATAAACTTTTTTAATAAAATGAC # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATTGTCGTACAATTTTTTAGTAATCTATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //