Array 1 36375-32802 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBKS01000003.1 Bifidobacterium pseudolongum subsp. globosum strain 2109B Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 36374 29 100.0 32 ............................. ATGTTCGCGGATTTCGATGAGGCGATGAGCGA 36313 29 100.0 32 ............................. GAACACAATCATGGCACAGCACGCCAGCGACA 36252 29 100.0 32 ............................. ATTTTGAACGTCATGTCCTGGCGCACGCCGTA 36191 29 100.0 32 ............................. GTTGGTCGGCGCAGCTGCTGCTCCAGTCACCG 36130 29 100.0 32 ............................. TAGCGCAGTTCGATGTCGGTGAATTCGACGCG 36069 29 96.6 32 ............................A TTCTTGTCACTGATCTTCTGCTGCTGCACCTG 36008 29 100.0 32 ............................. TTAGTTTGCAGGACATTGTTACGCGCAACATG 35947 29 100.0 32 ............................. ACCGGCAGGTTGATTGCCGAGAACAATGAGTA 35886 29 100.0 32 ............................. TTCGGGCTTCCTACCCATCTGATATTCATCGT 35825 29 100.0 38 ............................. GCCTGCCCGACGGCAAGATAGTCGCTTGAGGACAGGTC 35758 29 100.0 32 ............................. CCCTGTGTCTCCTGATAGTCGTCGATGCTCGT 35697 29 100.0 32 ............................. CGCCTCCAGTCACAGGGGCCCACGAGCAGTGA 35636 29 100.0 32 ............................. TTCATGAAGGCGTTCACCGATTCCGGCACCTT 35575 29 100.0 33 ............................. GTCAGGAAGAAACCCAAGAAGAACAGAGAAGGT 35513 29 100.0 32 ............................. TTGCCATAGGTCTTGCGCAGGTCGGCGATCAG 35452 29 100.0 32 ............................. TCGTGGGCCGTCGAGACGCGGCGTAGCGCGCG 35391 29 100.0 32 ............................. GACAACGACGTGCAATCGAAAGCGTTGCGCGC 35330 29 100.0 32 ............................. CTGGACACGCGGCAACGTGAAGCTAGGAGACG 35269 29 100.0 32 ............................. GATACGTCGAGCGCCCTGTCGGCTATTGCAAG 35208 29 96.6 32 ......................G...... GCTATTGCCGTTTTGTAAGGTCAATTCAACGT 35147 29 100.0 32 ............................. GTCGCTGAAGTCCTGCATTATTCCACCTCGTC 35086 29 100.0 32 ............................. CTGACCTAGCGCGCGCGTTCGGCGTGTCGCGC 35025 29 100.0 32 ............................. TAAAAGCGACACACCGACGACTTGACAACTTG 34964 29 100.0 32 ............................. ACCGACCGACGCAAGACAGCCAGGGAAGGCAA 34903 29 100.0 32 ............................. GCGCAGCGCGACGCGACGAGCAACGCGAACAA 34842 29 100.0 32 ............................. CCTTCACGGTTGAGTTTGACGACTGCCTTGTT 34781 29 100.0 32 ............................. AACGGGAATGTGAAGTACAAGTGCGGCAAGCA 34720 29 100.0 32 ............................. AAACACCATGTCCAATTACAACTACCTCACGC 34659 29 100.0 32 ............................. ATGGGCGGCGCGTGCTCTACGACCCCATAGCC 34598 29 100.0 32 ............................. TCCTTCTGGCTGTAGAATTTCCATGCGCTTGT 34537 29 100.0 32 ............................. GACCCATGCATCGCCGTCCTGTTCGATGTCCA 34476 29 100.0 32 ............................. CTCGCGCAGCTTCGCGACCTGCTTGCGCTGCT 34415 29 100.0 32 ............................. CGTGCGGAGCGTGACGGTCACCCCAAACAGGC 34354 29 96.6 32 ............................T GCCTGGTCACTGTCGTCGTAGGCCGGATGGTC 34293 29 100.0 32 ............................. AAACCGCCGATAATCCTACGATGCGTCAACGG 34232 29 100.0 32 ............................. CACGGCGCGTACATGACGCCGGACACGATCCG 34171 29 100.0 32 ............................. CTCGCGAAGTAACCCAGATCGATGGAGAGTTC 34110 29 100.0 32 ............................. CGCCGCCCTTGACGACCGCGCCGTCGAAAAAA 34049 29 100.0 32 ............................. CTGTAATACACAAGTGGGTCATCCCCGCTATG 33988 29 100.0 32 ............................. GGCGCTCAATGTGACGATGCTCATACGATGCC 33927 29 100.0 32 ............................. GCTCTTCGGAGGCGTTTTCCTCACCGGCGCAT 33866 29 100.0 32 ............................. AGCGTATCTTTTTCATGTCCATGTGGCACCAG 33805 29 100.0 32 ............................. GTCGAGTTGACGTTCGATATCACGACCGACCC 33744 29 100.0 34 ............................. GGTTGCCCAGTCTCGGATACACGTTGCGCGGTGA 33681 29 100.0 32 ............................. CGCGCCGGCAAGCTGCGCGGCACCTACCATTA 33620 29 96.6 32 ..............T.............. TCCTTCACTGGTTACCTCGGTTCTGAGACGAT 33559 29 100.0 32 ............................. AGTCGCACACCAGCAACGTCACGGGAGTTCCG 33498 29 96.6 31 ..............T.............. TGGTCGCGGATGCGTTTTCTGCGTCCTTGGT 33438 29 100.0 32 ............................. AACTCGAATCCATGTTCGAGACCTCGGCGGAA 33377 29 96.6 32 ..............T.............. GTCTCGAAGACCAAGGAGATGGACGTGACACT 33316 29 93.1 32 ..............T.............T GAGAAAAGCGGCTCATTCCAAGTGATCGTGCG 33255 29 96.6 32 ..............T.............. CTGCGGGACGGCGCACTCGACATGTGGAACTC 33194 29 93.1 31 ..............T.............C ACTCATGCAGGACCCACACGACCGTCTCAGC 33134 29 96.6 32 ..............T.............. TTGTACCGCAGCTGCCTGCGAAGATCGCTGTT 33073 29 100.0 32 ............................. GCTACGGCGGCTCACAGGGCGTCAGCCCCATG 33012 29 100.0 32 ............................. GACGTCGCCCTCGCCATCGCGTCGCTCACCGA 32951 29 96.6 32 ...........................T. AACCGTGTCGCCAAGGCCGTGCAGAAGGTCGT 32890 29 93.1 31 ..............T.........T.... ATTTTAAAACCTTTTTTCTATAAAAAGGGCT 32830 29 89.7 0 ..........................GAT | ========== ====== ====== ====== ============================= ====================================== ================== 59 29 99.0 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : GATTGTCGTCGTGCTGACGGCTGCGCCTCCCAAGATACGAGGTCATCTCACACGATGGTTGTTTGAGATATCTCCAGGTGTGTATGTGGGAAAAGTATCAGCCCGTGTTAGAGAGTTGATTTGGGAGCAAATTCTTGACAATATCCGAGATGGGCGCGCCGTAATGGTGTATTCGGCGAACAATGAACAGGGACTGGAGTTCAAAACCTACGGACAGGAGTGGTCGCCTGTTGATTTTGAGGGCCTTGAGCTGATTATGAGGCCTCATGATCAGGGCGAATCCAGCGGGAAATCTCAGGGCGTATCTCGTAGAAAAGGTTGGAGCAATGCATCACGATATCGTCGTTTTGGTAGATAGTTGTTGTTGCGATGTTAAACTGAGGATTGCGTGTCGACGTGAGGAAGTTCGGAATCGTGATGACGTTAGCGAAGTGTGACCGACTGTGCAAATCGAATTTTTCGAGTATTGTCGGAGTGCGTTTTGCTAATGGACTCAGACT # Right flank : TAATACCATGATGAAGGAAGTGCTAGCATGAAAACCCTTAGACTCGATGCTGCTCGTGCTGGTAGCTTTGAATAGTTTCTCGCCGATGGCCGTGATGAGACAACATTACAAAATGCCATTGGGAACGCGTCGATAATGTACCACGGCATATTTCATGAGCCATTCCTCAATATAGAGGACACGTCCGTCGACGTTTCCGATGAGCAACTGTACCGGGATCTGCTGGTGCATCTTCTACGGGAAATCAAAGAAAGAGTATCCACTCGCGAATCAATGAGATAACGCAACACCTACGACCATGAGGCTTTTGCATAAAACTGAAGAGGCAGTATGCCGGTTCGCTTGCCCTACATGCGCGGGGATGCTCCGAGGTCTGCGAACAGGGTCAGATTAGTGCATTGCGCATGTTAACGGTGGGCGTGATAATTGTTGCATTCGGCAAAAAGAAACGCGCCGTCAGCATCTATCCACGGAATGAGGGGATTATCATGCACAGAGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 50747-47669 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBKS01000003.1 Bifidobacterium pseudolongum subsp. globosum strain 2109B Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================= ================== 50746 29 75.9 141 ..............T.TA..A.....TGT TGCTCTGATGTTAAACTGAGAGTCGGGTATTACTGCAGTGAAGAGGTTCGGAAATATGATGATGTTAGCGAAGTGTGGCCGACTGTGCAAATCGAATTTTTAGAGCATTGCTGGAGAGTGTTTTGCTAATGGAATCAGACT 50576 29 96.6 32 ............................T TCGACGCGTTCGGTCAGGTCGTTCCAGAGGCG 50515 29 100.0 32 ............................. GCTACGCAACGACTTCTGGCGCTCGCCGAAGG 50454 29 100.0 32 ............................. CCCGCAAAATCCCAACAGCAGGACGAGCGCGC 50393 29 100.0 32 ............................. GAGTTGGTGATGGAGCAGATTGTTGACCTGAT 50332 29 100.0 32 ............................. TGCAGTATCCACTCATTGCCCTTGTGATGCCG 50271 29 100.0 32 ............................. GCAAGCAAAGGGCTTGACACAGCAGCAAGTTG 50210 29 100.0 32 ............................. GCCGCTGCGGATATGCCCGACGGCGTGCGGCC 50149 29 100.0 32 ............................. CACCATGGCGATACGCTGGTCATTCCCCGCCG 50088 29 100.0 32 ............................. ACCGACCTCTCCTACCGTGACATCGAGGAGAA 50027 29 100.0 32 ............................. ACCTCAAGAAGTGGAACGACGCACTGCGCATC 49966 29 100.0 32 ............................. GCGAAGCTCGCGAAGATCGACACGCAGTACAT 49905 29 100.0 32 ............................. CAGGGTCTGGGAGACAATCAGGAATATTCCTT 49844 29 100.0 32 ............................. CCGACGCTTTCGCCCATCTCGTTTGTCACTCG 49783 29 100.0 32 ............................. AATGTTTTTATTGTATGTGGAATCCCAGAGGT 49722 29 100.0 32 ............................. ACAACCGCCCAGAATTGGTTCGAGACCCAGAC 49661 29 100.0 32 ............................. GACACCAGACGAATGAAGGCGTTCCCGTCGAG 49600 29 96.6 32 ............................T CACATGCTCGTTATTCGACAACATCGCAGGAA 49539 29 100.0 32 ............................. ATCACGCCGCCGCCAGTCGCCAAACTATTCGG 49478 29 100.0 32 ............................. CAAGGAGCCCGCAACCAGGTCGACGTGTCCGA 49417 29 100.0 32 ............................. AAAACAAATATTCAAACAAATACCTCCACTAC 49356 29 100.0 32 ............................. ATCATGAGCGACCCATCTGGGCAGCCAACGCC 49295 29 100.0 32 ............................. GCGCCGGATTCGACGCCTTCCACGTCCCCGCA 49234 29 100.0 32 ............................. GTCCGCGAGGGGTTCATTCGTCTGCCGAATGG 49173 29 100.0 32 ............................. AACGGAAGCAAGCCCGCTGCCGCACCGTCGAA 49112 29 100.0 32 ............................. TGGGAACCAAAAACTGTCCACTCGTGCTCAAC 49051 29 100.0 32 ............................. AATCGACCGGCTCCTTGGGCTTGTCCGACGAA 48990 29 100.0 32 ............................. GAGTAACACCATGAAGACCCTCACCTACCACG 48929 29 100.0 32 ............................. ACCGCGACCCCAACGCACTGGAGTCGGCCGCC 48868 29 100.0 32 ............................. TGGCCGCCGGTGTGGCCGTCACGAGCCGGTCC 48807 29 100.0 32 ............................. ACCATGATGACGGTACTTGTTGGCGACGGCAA 48746 29 96.6 32 ............................T ATGCCTGAGCGCCACAATTGTTGAGCGCCTCG 48685 29 100.0 32 ............................. GCGGTATTCCGTCCGATTTCCGGTGTGTGCAA 48624 29 100.0 32 ............................. GGCGTCGCCTCCACCAGTGCGGCCACCTGCAT 48563 29 100.0 32 ............................. CCCCATTGCCGAAGGACGCGCCCGAGGACCAC 48502 29 100.0 32 ............................. TTGACGGCATCATCGCTGGAGTTGGACGGGTT 48441 29 100.0 32 ............................. TACACCCGACGGCCACCCGTCAAATCAAGATC 48380 29 100.0 32 ............................. GCCGAAGACCTGCAATTCCTCGCGACGCAGAA 48319 29 100.0 32 ............................. CAGGCACTGGCCATGAAGAAGGAGACGAGCAG 48258 29 100.0 32 ............................. AAGATTGTTGGTGACCAAGGTGATCAGGTGGC 48197 29 100.0 32 ............................. CAGGCGCTCGAGGATTCGCAAGCACAGGAGAA 48136 29 100.0 32 ............................. ATGTCATCGAGAAGGAAGAAAACGAGGCGACG 48075 29 100.0 32 ............................. AAGTCGGTGCGCACGTATTTGACGGTGGGGCA 48014 29 100.0 32 ............................. CTCAACGTCCACCACACCATCGTGTTCAACCT 47953 29 100.0 32 ............................. CATCGTCACAGCCTGGAACGGAGACGACCCAC 47892 29 96.6 32 .......T..................... CATCGTCACAGCCTGGAACGGAGACGACCCAC 47831 29 93.1 105 .......T...................A. AACATAGGCGTTAGAACATTATGCATTTGCAACTGCCGTACTCGGTACATCGGTTATGCACCATGCATGAGGCGGTGCGAGGACTCGCTATGTGGGAGCAAGTGA 47697 29 79.3 0 .GGC.T........T............A. | ========== ====== ====== ====== ============================= ============================================================================================================================================= ================== 48 29 98.6 36 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : GATGCAAGCGATGAGTTGGCATATGCATGGCTTGAGCGGTATGCGTTTAATGTTTCGACAGCGAACAGCGATGCGCATGCTAAGAACTATTCATTGATGTTGGGCGCCGATGGTGTGCGGTTGTCTCCGGTGTACGATGCTGTCGCCACCAGATTCTGGCCTGAGTTTGTGCAAGAGTATGCGATGCCGATAGATGAGGACGTCCCGTTTGCCGAATGGGTGACGCCCTCCCAATGGGCTGAGCTGGCACGTAGGCATATGCTTGATGAGGAACGGGTGGTTGTTCTCGCTCGTACAATGGCTGCTCATGTGCTGACACAGGCTGAAACATTACGTGAAACACTGGCCTCGCAAGAATTCGACCGACTCATGGCATGTCTGCGTAAAGTCAACGAATCAATCGAACCCTTATTCTAGCGTTCGCGGACGAAGTACCTTTCTTTGCAGCTGCGGGTGCGGGATGGTCCGATTGCAGTCTTGCGATTATCGATCTACTCAAG # Right flank : CGCTTCAGCAAGATTCATTTTCAGCCTTGCGGTCGTGCGTTTTTAGGGGAGATACCGGTCAAAGTTACCATTGTAGGAAGTTCTAAGGCCGCGTTCACTCACGACAGTTCTTTCACCACGTTAACCTATGGGTGGGTATTCAGATCAAAGCATCATCTGGAACTTCGCCCCATGGTTTCGGATTGTCGATATCGAGCCAATGCTGGATGTCTTTGATGCATTCAGCCAGACTCTGGGAATACGACTCCCCAAAATGGAAGTAAGGCTCGTGGAACCGTTCGACGTACTCATGTATCAGTTTTTGGAGCAGATACAAGGTTTGTATAGTGTTTGTTACGGTAAAATCGCAGTATAAGATGATGCAAGAGCGGAACGAGCCGGAAGGAGGAATCTCGTGACGGATATCAGAGATTTCCGCAGCATTGAGGAATACCGGCAGTGGCTGCGCATGAACCGGTTGTTTTCCCAGTATCCTATTGATCAGATCCGCCAGTGGGGGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //