Array 1 114329-115676 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXY01000001.1 Pseudoalteromonas luteoviolacea H33-S contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 114329 28 100.0 32 ............................ TGTTAGAGCGTTTTTGCATTCTAACTCCTGTA 114389 28 100.0 32 ............................ AGACAGCATTCTGAGCGCAGGCGGCGCTGATT 114449 28 100.0 32 ............................ TGAAGGTTTTGAGCATGTTGGTGCTGTACTAC 114509 28 100.0 32 ............................ TATCCAGTTCATACCAAGTGTGTACGCATTCC 114569 28 100.0 32 ............................ CAAACCCTCGTTTTGGGTCATATTGCGTATCA 114629 28 100.0 32 ............................ CCTTGCGCTATAGATACAGTAGGACTTGAGAA 114689 28 100.0 32 ............................ CTAACGTTCGCAACGCTCTGATTGTCGTCAAT 114749 28 100.0 32 ............................ TTGCCGCCTTAAGCTCTGTAGCTTCTGCTAAT 114809 28 100.0 32 ............................ AAATATCGTGGAGAAAATTGCGTCTGCACAGC 114869 28 100.0 32 ............................ AATCACCATGCTCACATTTCTAACACTCATTG 114929 28 100.0 32 ............................ TTTGCAAGTGGCTGCAGACTTTGAAGCACAGA 114989 28 100.0 32 ............................ TAATTATCAGCGTAGTCATGTGCACTTTCAAA 115049 28 100.0 32 ............................ ATGCGGGAGATTATTTGCTCACCATTCGGCCC 115109 28 100.0 32 ............................ TACCTGAAAATAAGCAAACTTATAACCCGCTT 115169 28 100.0 32 ............................ AAAAAGAAAAGGCGCGACAACCTGAAGAGTTG 115229 28 100.0 32 ............................ ACAAAACACAGGGGTTAGCTCTCAATTATTCA 115289 28 100.0 32 ............................ GAGTAAATACCACGCTAACAGCCCAAAATATA 115349 28 100.0 32 ............................ AGTGTGATTCCCACACATCGACACTTAAAGCC 115409 28 100.0 32 ............................ TAAAAAAGCTCGTAGTGTGGTAGTGGTATATA 115469 28 100.0 32 ............................ TGATGGTTTATACGGCTCTCAATCACTACCCA 115529 28 100.0 32 ............................ AGCTTGCAAATGTTTATGTTCAGTATCAAAAG 115589 28 100.0 32 ............................ TGTTGACGATTGAACAGCAAGTTGAACAAAGC 115649 28 85.7 0 ...........C.............GTG | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.4 32 GTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : CAAGGAGAAATCATGAAAAAACTATTACTTACAGCGGTGAGCTGTTTAGCAATGAGTGCTGCAGTTATTGCAGCAGATACGCAATCGACTACTGCTAATCAAACGTTAACGGTTGATGGTGTGACAGCAGCTACTTACCCAGCTCAGCCAACCATTTTAGACCAACTAACCCCATCAAATGCGTGTGAAGCGCGCTGTCAAAGTCACTACGAGGCGTGCGTGAAGTGGGCGCCACCTTGGACAAACTGTAATGATTTTATTAGACGTTGTATGAACAACTGTTCTAGATAAATCCATCTATATAAAAAATGGGAAATATAAAAGGCCAGTAGAATGGCCTTTTTTGTGCGCCAAATAATGAGCAAAAATACCTTTTATTTTTTGCTCATTAACAGAGGTTTTAAAATCAATAAGTTACAAGCGTTCTAAAAAAATAAGGTATTTTCCACATTATTTAGCTAGGTGTTTGTATTTATGAGTTTTTGTGTTAAAAACCTATA # Right flank : ATGAGTGACCGAAACGAAGTTTCGCAGCGCGAAGAAGTGAGGTCATGGATGACCGATGTAACCAAGCTCCATGGATGGATTTCAGCTCCGTATTGGAACTATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10750-11513 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXY01000108.1 Pseudoalteromonas luteoviolacea H33-S contig_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10750 29 96.6 32 ..G.......................... CATCTGCCAACGCAGGTTTGCTTTTAGCCACT 10811 29 96.6 33 ..G.......................... GCTGGTAACTTGTGAACTTTTCATAATATTTTC 10873 29 96.6 32 ..G.......................... GTACTATTTTATTTTGGCTGTCTCAAGATGTA 10934 29 96.6 33 ..G.......................... GCTTGTGATCACGGGTTGGCTGTTTAATCCATC 10996 29 96.6 32 ..G.......................... AACTTGCGCCGGAATATGATTTTGATATGAGT 11057 29 100.0 32 ............................. CAAACTGGCAACCAGTTTTTCGTAGAATGACC 11118 29 96.6 32 ............................A TTCCAATGATTCTTCATAGCTTTTTTGAGTTC 11179 29 100.0 32 ............................. CTGTAGCACAAAATGAGGCCTACAAATCGTCT 11240 29 100.0 32 ............................. GTGTAACAATGCGAGTGACGTGCCCACACTGC 11301 29 100.0 32 ............................. AAACCGTTATTGATGTGCGCGTAGGATACGAT 11362 29 100.0 32 ............................. CGCCTAATTGAGTTAGGCCAAGAACGAAAAGC 11423 29 100.0 33 ............................. TTTAAAGAACTAGCTGAGTTCGCGACCCCAGAC 11485 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.4 32 GTCTTCCCCGTATGCACGGGGCTAAACCG # Left flank : CGTATGAAGATGCGCAACCTCCAGCAATACCTGAACCAGAATCTATTGGTGACGATGGCCATCGCAGCGGTGGTCCATTATGAGTATGTGTGTTGTTGTAACGGAAGCAGTACCGCCTAGGTTGAGAGGAAGGCTCGCTGTATGGCTGTTGGAAATCAGAGCGGGCGTATATGTGGGCGATATTAGCCGCCGTGTTAGAGAAATGGTGTGGTTTCAAGTCGGTGAGTTAGCCGAAAATGGTAATGTAGTAATGGCATGGGCAACTAATACTGAGTCCGGCTTTGACTTTGTCACTTACGGAAAAAACGCCCGAATGCCAATTGATTTTGACGGACTGAGATTAGTGAAATATACACCGCAAGAAAGCTCTTCTATTGATGATGAATAATTGTTTTGCTCTTTAAAAATATGGCTATTTAAAACCTCATATTGTACCTAAAATTTTTGGTAGATTTTTATTCGTTAAATTTACTTATATAAATCAATGGTATAAATTTAGA # Right flank : GGTAATCACTGGCATTATAACCATGACTTATGCGTCTTCCCCGTATGCACG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 103984-103782 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXY01000079.1 Pseudoalteromonas luteoviolacea H33-S contig_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103983 19 65.5 32 ----------................... CACGGACAATTTCGCGGTATTGAACAGCCATT 103932 29 100.0 32 ............................. CCAGGGTCGATACCTACTGGCACCTCGTGTAC 103871 29 96.6 32 ..........C.................. TGACAACAAACTCCCTGCCATCGTTTGTTAGA 103810 29 82.8 0 A.G.........CA............T.. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 86.2 32 GTCTTCCCCGTATGCACGGGGCTAAACCG # Left flank : | # Right flank : AATCTCAGGACTATGGTGCCAATACGTCCATGCGTGTTCCCCGTATGCACGATATTTATCAGGATGACGAGGGTTCTCTTGGTGTGTTGGTTTTATTTAAGTGCTCCCTTGGCCGTCTTCCCGGGCTTGCCCCGGGATCCATATATGGGTGTTTCGCTGCAATCGATATTTACCAACCCGCGAAAACTGTAATGGGGGTTTCCACTTTGGCATCCTTTGATGCAGCTTGTCACCTTTTGCATGTTGAGTGTCACGATCTGTCAGTGTGTGGCGCGTTTTGAATGCTTATACTGAGCACATTGAATCAACGGGGTTTAAACAGAGGTAAAACACATGGCAAATACAGCATTAATCACAGGCGCATCGGGCGGTATTGGACTTGAATTAGCACACTTGCATGCACAGCAAGGGGGTGACTTAGTCTTGGTAGCGCGCTCTCAAGATAAGTTGGATGCCTTGGCAAAAGAGCTTGAGGTTAAGCACAGTATTAAAACGACCGT # Questionable array : NO Score: 3.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.31, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //