Array 1 75914-74907 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMCH01000011.1 Escherichia coli strain MOD1-EC6134 MOD1-EC6134_11_length_145363_cov_56.0007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 75913 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 75852 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 75791 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 75730 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 75669 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 75608 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 75547 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 75486 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 75425 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 75364 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 75303 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 75242 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 75181 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 75118 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 75057 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 74996 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 74935 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 102495-101612 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMCH01000011.1 Escherichia coli strain MOD1-EC6134 MOD1-EC6134_11_length_145363_cov_56.0007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102494 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 102433 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 102372 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 102311 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 102250 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 102189 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 102128 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 102067 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 102006 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 101945 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 101884 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 101823 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 101762 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 101701 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 101640 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //