Array 1 131498-130147 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSDR01000001.1 Streptococcus suis strain PP203 NODE_1_length_332953_cov_79.636372, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 131497 32 100.0 32 ................................ TTGACATGATATAATTACCTCGTAAATGTTTT 131433 32 100.0 34 ................................ ATAGTGTCTCCTTTTGTTTTTGCGGTTAAACCGC 131367 32 100.0 33 ................................ TTTTTCTTAATGCGTTTATTCATGGTTTCCTCC 131302 32 100.0 33 ................................ AAAAGCCTCAAATTCAGACGCCTCACCGCCTCC 131237 32 100.0 35 ................................ CAGTTCCTGCCTGTTGCAATCCTGGTCCTGCTGAG 131170 32 100.0 33 ................................ TTTACATTACTGAACCTGATACAGATATTGTAG 131105 32 100.0 34 ................................ AGGAGTTACATTGTCATCAACACTAAACGATTGA 131039 32 100.0 35 ................................ AACTAAATCAGATTCGGTATAAAAATCATAAGAGT 130972 32 100.0 34 ................................ TGAAAGCGATGAATTTATGGAGCGATGACAACAA 130906 32 100.0 33 ................................ TGAGAGTGATGTTAAAGCTACTGAAAGTGCTAT 130841 32 100.0 34 ................................ CTTAGCTGAATTTCTTGATTTACAAATAGAACAA 130775 32 100.0 35 ................................ TCGTGTACGGAAGAGGAGGATGCGAAACAACTCAC 130708 32 100.0 36 ................................ CAAATGACACAGTTGATAAAGTCAGCCTCACGGTCG 130640 32 90.6 34 .........C...C..........G....... TGATTTAGGTGGTGTATATAAAACTACTAAAGAT 130574 32 90.6 34 .........C...C..........G....... CCCGAACAAGTAAGACACGATTGACAACCTCCTC 130508 32 84.4 34 .......T..T..C.A........G....... ATTATACAGGTGGTTTACAGGTTCATACAGGAAC 130442 32 84.4 33 .......T..T..C.A........G....... CAAAAAAATGGATGACAAGCTGGTACTCAACAA 130377 32 84.4 34 .......T..T..C.A........G....... GGGCAGATGTTATGTCACAAGCGCAGACTATACT 130311 32 84.4 34 .......T..T..C.A........G....... TCCTGTTAAAATAGTTTTGTTTGTAGAGGATAAA 130245 32 84.4 35 .......T..T..C.A........G....... CCTGCTGTCAAGATGTTGGACCACCTCCTCACCGT 130178 32 78.1 0 .......T..T..C.A..A.....G.....G. | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 94.3 34 GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Left flank : GCAAAGGCTATTCGAGGCGAGTTGGACAATTATCCTCCGTTTATGATATAGGAGCTATATTATTATGGTATTAGTGACCTATGATGTCAATACAGAAACAACAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGATTTTGGTCAACGTGTGCAACATTCTGTCTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTCTCTCTGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAACATATGAAAAGTAGTGAAAATAGAGTGAATTTGTGGTATATTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATGGCACT # Right flank : AACGTATCGACAGACTAGCTGCTCGGACGGACCGGTCGTACTCTTTGCGTATACGTAGGTTGAAGTTGTTTTTTGCTTAACACAGTATATCTGGCATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCACAATTTTCGAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGTACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCGGAAGAGGGCTTGCAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACCTGACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAA # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTCACGAGTGCGTGGGTTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //