Array 1 259665-258376 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOQP01000001.1 Escherichia coli strain MOD1-EC6843 MOD1-EC6843_1_length_412530_cov_45.2405, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 259664 28 100.0 32 ............................ AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 259604 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA 259544 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 259484 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 259424 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 259363 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 259303 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 259243 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 259183 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 259123 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 259063 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 259003 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 258943 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 258883 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 258823 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 258763 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 258703 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 258643 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 258583 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 258523 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 258463 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 258403 27 92.9 0 .......................C-... | T [258384] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 269291-268721 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOQP01000001.1 Escherichia coli strain MOD1-EC6843 MOD1-EC6843_1_length_412530_cov_45.2405, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 269290 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 269230 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 269170 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 269110 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 269050 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 268990 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 268930 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 268870 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 268810 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 268750 28 85.7 0 ....................T...C.CT | C,A [268724,268727] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //