Array 1 20356-20120 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUXD01000046.1 Megasphaera cerevisiae DSM 20462, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 20355 33 100.0 35 ................................. AAATTAATCCGTAGCTGGATGGCCCCAGATGATAC 20287 33 100.0 34 ................................. ATGAGCGCATTTTACCGCTTATTGAAAAACGTAT 20220 33 100.0 35 ................................. GGGAGTATACCATGCTCTTACCGGGGGGTGCTAGT 20152 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 4 33 100.0 35 GTCGCATCCTTCACGGGATGCGTGGATTGAAAT # Left flank : ATTTTCTCGCAAGATTATTGCATGGAATGTAACAACAACTATGCAGGTTTCCTGTGTTGTAGACACCATCAACAAAGCAAAAGCAAGACGTACATTGGACCAACCGTTGGTTATTCATTCGGATCGCGGCAGCGCTTACGTTTCGCGGGAGTACATACGAGCCACGAAAAACATGCAACGCAGTTATTCCAAAAAAGCTTTCCCTTGGGATAATGCCTGCATTGAGTCCTTTCATTCGTTGATTAAACGGGAATGGCTGAATCGGTTCCGTATCCGCGATTATCGGCATGCATATACGCTGGTATTTGAATATCTGGAAACATTTTACAATACGGTACGGATTCACAGTCACTGCGATTACATGTCGCCAGACGAATATGAAAAGTTGTATCAGCAGTGTCAGAAAAAAGATGCCTTGAGGGCAAGTTAAACCGAGGATACTTTTCTCATTTTATTTTGTACTAAATATTGACATAGGACCAAGTTACCCAATAGGAAAC # Right flank : TTTCCCCACCGTTCCAAATGCCATACCCATGCCGTCGCATCCTTCGCGGATTCAATGAATTTGCTTTGATTTATCAAAAGATTCACAGTAAAAAACTTTACACCAGTCACTGACTATAGTATAATATTTATGTCGTACGGGTGCTCAGTGTTTCGAAGACTCCGACGTTCACTTAGCGCTTTGCGAATAAATTTATTTTTATGGAGGAAGAAAAAATGTTAAATGTAGAAGAAAAGAAAGAAATTATTGCTAAATTTGGTGCAAACGAAACTGACACGGGTTCTCCGGAAGTACAGATCGCGCTTCTTACGAGCCGTATTATCTATTTGACAGAACATTTGCGCAGCCACAAAAAAGATCATGCATCACGCCGCGGTCTTTTGAAGTTGGTTGGTCAGCGCCGGAATTTGCTCGGGTATTTGCAGAAACACAATCTGGAACGGTACCGTGCGATTCTCGAAAAACTGAACCTGCGTAAATAATATTGCACACTGTGAGGC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTTCACGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 152092-152325 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUXD01000001.1 Megasphaera cerevisiae DSM 20462, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 152092 33 100.0 34 ................................. GCGTACAGGATATATTGATTGATCAGATACGGAC 152159 33 100.0 34 ................................. CGGCATCCATCCCCCTTTTTGCCAAACCAGTTCC 152226 33 100.0 34 ................................. CCAGTGGCTATGCCCTAGTAGGAGAAAACGGCGC 152293 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 4 33 100.0 34 GTCGTATCCTTCACGGGATGCGTGGATTGAAAT # Left flank : GTACAGGCTCTCCTCTTGGCACGGTATATCCGTGGAGATATGGATGGATATCCTGCATTTGTGGGGAGGTGAGTAGATTGCTAGTTCTTGTCACTTATGACGTTAATACCAAGACAACTCAGGGGAGAAAACGTCTTCGGCAGGTAGCACGCTGTTGTGTGGCCCATGGGCAGCGGGTACAGAATTCAGTATTTGAATGTTCACTGGACGAGGTACAGTATGTAATTTTGCGAGACAGACTATCCAGTTTAATTGATGGAGAAAAAGATAGCCTCAGATTTTATAATCTGGGGAATCATTATCAAAGAAAAATTGTGCATGTCGGTGCCAAGCCGACATATGATCCAGGTGAGCCTCTGATTTTATAGCGCGAAGTATAAGCATACACAAAATATAAAGGCTGAAATCCTTGGTTTTATGAACTATAAAAATGACCTAGACAGAGGTTCGCGGAAAATGTAGAAAAAGGTCTGATAAAATCAATGTTATTTAAGAGTACT # Right flank : TTAATACAGATGTTGGTGGAATGACAGACTTACATGTCGTATCCTTCACGGGATGCGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATCCTTCACGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 2 153873-154242 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUXD01000001.1 Megasphaera cerevisiae DSM 20462, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 153873 33 100.0 34 ................................. GAAAATGAAGACGTATTAGAACCATTCTGGGTGT 153940 33 100.0 34 ................................. TCAAAACGCGGCAAAGGAGATAAAGAAGTTATCA 154007 33 100.0 34 ................................. CTTGCATATAGGTGGGAAGATCGAATGCACTGGG 154074 33 100.0 36 ................................. TGTTATTAATAAGCCAATCGGGGAGCGTATTGCCAG 154143 33 100.0 34 ................................. ACCAAATGATGCATCGGGGAGACCTGATTGTAAA 154210 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 100.0 35 GTCGCATCCTTCACGGGATGCGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTTCACGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 155119-155353 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUXD01000001.1 Megasphaera cerevisiae DSM 20462, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 155119 33 100.0 34 ................................. TGTAAGCATAGTAAAGGACAATGGGCAGGCAAGC 155186 33 100.0 34 ................................. GATCCGATACCAATACCACCTATATGCTGAAACA 155253 33 100.0 35 ................................. ATACAATGATAATTTTTATTGTCTTATTTCCGTAC 155321 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 4 33 100.0 35 GTCGCATCCTTCACGGGATGCGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AGCGTC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTTCACGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //