Array 1 672768-666244 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI867150.1 Syntrophorhabdus aromaticivorans UI SynarDRAFT_SAI.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 672767 35 86.1 36 ..T.-..C...G..C..................... AGATCATCGGGCATGAAGCCGACCTTATGACTGCCG AAGG,G [672752,672758] 672691 36 100.0 36 .................................... GGAAAACCGCCGAGGAGGCGCTCATAGAGCGCTTGG 672619 36 100.0 35 .................................... TTTCTGAGAAATCCCTACACAACACGCTCAAGATC 672548 36 100.0 35 .................................... CCCTCTGGAGACTGATGCTGGTCTCAGCACCTACA 672477 36 100.0 38 .................................... TAGGCCGGAAGACCTTGCAACAATCCGGTCAGCGGTCT 672403 36 100.0 37 .................................... TCCCTGGAAACGGAAGAAGGCGAAAAAATATCTTGGA 672330 36 100.0 39 .................................... CTATCCTAACGATGAGGCATTGACCTGTTGGAATGGCAG 672255 36 100.0 34 .................................... GTATCTCTGCCCGGCGTGCCATGCCGAGCAATCG 672185 36 100.0 34 .................................... TCATTGGCCGGATGACACCAGCGACGCACAAGTT 672115 36 100.0 38 .................................... GCATTTGAGGGAGGCTACGTGTGTGACGCTTGTGTCAC 672041 36 100.0 36 .................................... GAATGCCGGGCAGCATGGAAAGCAGCCCATGTAGCA 671969 36 100.0 35 .................................... AACAAGTGTGCTACATGGGTTCCCACCCATATATT 671898 36 100.0 34 .................................... TCAGAAATGATCGCAACTATCACTATTGATGCTC 671828 36 100.0 35 .................................... ACTCAGACGAAACCAGATAGAAATATCTGGTAGGT 671757 36 100.0 35 .................................... AATTAGATGAACAGTGGAAGAGGGAGAAGGAAGAG 671686 36 100.0 35 .................................... GGTTTGAAGGGATGAGAAGAGAGGGAATAGATCCT 671615 36 100.0 36 .................................... ACAACGTTTATGGCCGGATCCATCGGCCAAAAGGTA 671543 36 100.0 35 .................................... TCAGCGCAGCCAATAGATATTTGGAAGATAGAAGA 671472 36 100.0 35 .................................... ACAGTTGTCAATCAAGATTGATTTTTCAACCTCAA 671401 36 100.0 38 .................................... TATGTTGCATAATAGTAAGAGTGTTCAACCATTGAATA 671327 36 100.0 36 .................................... GCAAAGATGAGCTGGTTAAGCTCAACGGCATGACTT 671255 36 100.0 33 .................................... ATAAGTATTGGGTAGAAGGTGAAGGAAAGTACA 671186 36 100.0 34 .................................... GATTGAAAAGGGGTGAATCAGCCGAAGCAATCGC 671116 36 100.0 34 .................................... GTAGAAGGTGAAGGAAAGTATATTAAGAGTATGA 671046 36 100.0 32 .................................... TAGTATCCAACAGGATTATTGCCGGTCAAAGA 670978 36 100.0 38 .................................... CGTTTTTGGATTCAGGATTGCCATTGGAAAAGGCCGAA 670904 36 100.0 35 .................................... CCCTGCCACGGCAAGGAGACCTGCCATACTGGGAG 670833 36 100.0 37 .................................... CAAAGACCGTGGCGGTCATTATCAAAAGATGAGTTGA 670760 36 100.0 38 .................................... CCATCAAACAGATTCAGTCAATGAGTTTTAATCTAAGT 670686 36 100.0 33 .................................... AGTAGAGTTGAAGCAAGTGTGTCAGTACAAGGA 670617 36 100.0 36 .................................... GCCAGCGGGACATGGACGTTTACGACCGTTGAGGGC 670545 36 100.0 38 .................................... ATGAAAGGTGAAAGAGCATTAGGTCTTAAAATCATAAA 670471 36 100.0 38 .................................... CCAACGTCCGTGGAGAACACTGTCAAAAAATGAACTAG 670397 36 100.0 40 .................................... ACAATGAGTCAACTCATAAGTTGGAGCTTGGAGCTGTTGA 670321 36 100.0 33 .................................... TATTTAACAATCTCGGAGGATGATATGATAGAC 670252 36 100.0 36 .................................... TAGGCTCTTCTCAATAAGTAAACAAATCCCTTCATG 670180 36 100.0 35 .................................... TCTATTGAGTAAATAGAGGATGTTGAAGGCTTGGA 670109 36 100.0 35 .................................... GCTATGGCAAACTGGAATGTTACTCTCCAGAGCAA 670038 36 100.0 33 .................................... GGAGGTCCCTGAAGGGATGACCTCCCAATATAC 669969 36 100.0 34 .................................... CAATATACGGAAGAGTACCCCCATCTTTAGGCTC 669899 36 100.0 37 .................................... TCCAAAATGGTAGACGCATTATAGCGTCAGTTAAGAC 669826 36 100.0 37 .................................... TTATACCCGGACGGTCGTCTCTTTCTGGCGTGCGGTG 669753 36 100.0 35 .................................... AGAGTATGAACTCCGCGTTGTTTACAAGACAGAGC 669682 36 100.0 36 .................................... AAAAATATAAGCCGTTGCATCGGTATCTTTTTGGAT 669610 36 100.0 34 .................................... GGAATTACAAAGAAATAAAAGGAGGCCACAATGA 669540 36 100.0 35 .................................... GGTGGCGGAATAGCATACGCTACGTTACATTCGGA 669469 36 100.0 35 .................................... CGGCGATTGAACCGGGAGCAAGTATTTACCTTGCC 669398 36 100.0 37 .................................... GTATATCAAAATTCGCTTGTCATCCTTTGATATTACA 669325 36 100.0 37 .................................... GGTTAACGTGGGGCCGTCCCGATTAAAAGGAGGAAAT 669252 36 100.0 37 .................................... TAGTTACGCAGGCTCGTGTAAAGGTATGAACTCAGAC 669179 36 100.0 35 .................................... GAAGCACAGGGAGAAGATAAGGAGGAACAAGTAAT 669108 36 100.0 37 .................................... GGTTACCACGCCATCAACAGGTTCCTGAAGCTTGGCA 669035 36 100.0 39 .................................... TACGCCCATACACGGTGAGCACGTTTCAGCTTTTTGAGA 668960 36 100.0 32 .................................... GCACATTGGTTTTTGGGTGGGTCATCCCATGA 668892 36 100.0 39 .................................... TCGCCCCAAGCGAGCAGAGCTTCCGCGCGCGCCTTCCGT 668817 36 100.0 36 .................................... GCTTCTTGTCGCGCCCACTCTTCCTCGGCGAAATCC 668745 36 100.0 36 .................................... GCAAGGCTGGGCAAGACAAGGGTTTTTAAACAAGAG 668673 36 100.0 35 .................................... GGAAAAGAGCAAGGCTTTGTCCCTGCCAGCGCGAA 668602 36 100.0 38 .................................... TGGGGGACAGCGTGTGGAACAGCGTGTGGAACAGCGTG 668528 36 100.0 36 .................................... CGTTCGGTTCGGTAAACGCCGGGCTGGAATATATTC 668456 36 100.0 34 .................................... GAACAACCGCGAGGCAATAGTGAAACGGAGTATC 668386 36 100.0 36 .................................... TCGCATAGCCCCGCATAACCAGTATCAGGTCCGGGT 668314 36 100.0 38 .................................... ACAATGAAGCGAACTCATACCATAAACCAGGAGGGAAC 668240 36 100.0 36 .................................... GGGAGGTCTCCGAAGGGATGACCTCCCAATATACGG 668168 36 100.0 36 .................................... ATTGATGTACCTGAATCAATCGAAGAAGCAATCTCC 668096 36 100.0 36 .................................... CCCCAAAGGAGAGAAAAGGAGGAATTAAAATGTGTA 668024 36 100.0 33 .................................... AGCGCATGGTAGGCTATACTGAGGCATGGGAAG 667955 36 100.0 39 .................................... TATACCTGTAGCAACAAGAGTTAGTGTTGTTACACTGGC 667880 36 100.0 40 .................................... GAAACAAAACAAAGGAGGATAAAAAAATGAAGGCTGAAGT 667804 36 100.0 37 .................................... TGTTTACATTTGTTTGTCTGTACAAAACCACCATTGT 667731 36 100.0 38 .................................... AAAAAGATTTGTCGCACATTGGTTTTTGGGTGGTGGGT 667657 36 100.0 37 .................................... CAAAATGGAGGTGTAAGATGGAAAAAAGATTTGTCGC 667584 36 100.0 35 .................................... TTCCCCGTTGAGCGTACCACTCGATATCGCTTATC 667513 36 100.0 36 .................................... TGGACAGGGCCAACAAATATGAGTACGACCCCACAA 667441 36 100.0 37 .................................... TCGTTAAAAGAAACAACAGCGACGCTACTCAATCAAT 667368 36 100.0 37 .................................... TTTAACGGTAAAAGCCGTGAAGAAATAATTGAATCAT 667295 36 100.0 34 .................................... GACGCCATGCTTGCCAAATAAATCAACAAAGAGC 667225 36 100.0 37 .................................... TGGCGGTCGTTGAGCAAAGATGAGTTAATCAAACTCA 667152 36 100.0 37 .................................... TGAAAAAGAATATGTAGCTGAATTTAAAAAGAATTAT 667079 36 100.0 38 .................................... TTCGATAAAACGGTTGACAGCGTACCGGAAAACGCTGA 667005 36 100.0 40 .................................... CAATCGAAGAAGCAATCTCCATGTACGGCGGGCCTGCGGT 666929 36 100.0 36 .................................... GTTGGCAAAAACGGGGGAGAACGACAAAGCGGAGGG 666857 36 100.0 36 .................................... CAAAAGGAGGATTAAGATGTGTAAGATAGTAAAAGA 666785 36 100.0 34 .................................... CAAGATGCCTTAGCAGCATGGTCAGGATATGAAT 666715 36 100.0 37 .................................... ACAGAGAAGATGGTTGAGGTGTTCAGGGAAGTACGGC 666642 36 100.0 37 .................................... CTTACCCGACGAATCGGTGAACTGTTGCGTGACAAGT 666569 36 100.0 36 .................................... CAGGATATGAATATGACAACACACAGGCAATTTGCC 666497 36 100.0 37 .................................... AATTATAGGGGCATCGTGGCGGGCAAGGGTTATCTGG 666424 36 100.0 38 .................................... GCATGCTTTTTCAATCACAAATGACAAAGGTGACAAGG 666350 36 100.0 35 .................................... GTTCGATAAAACGGTTGACAGCGTACCGAAAAACG 666279 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 91 36 99.8 36 GTCGCAATCCCTTCTATTTGAGGTCTTGGTTGTTTC # Left flank : ATGGAGGACCTTGACCTTTCTTGCGCCCATGAGCCGGAGAGCCTCATCGTAGACCTGCGCCTCGACACTTCCGCCTCCCACCGTGCCGTAGGACTTCTTGTCCTCCCCAACGAACATCTTTGCCCCTTCGTCCCTGGGAGCAGCCCCGGTTTTCTTCACCACGGTAGCTATGATCCCTGCTTTGCCTTCATCCAAGTACAATCCCATGGTCTCGTATAAATTCATCTAAGCCTCCACGCGCCTCAATAATTAACGGGGCTCACGTCGCCCCCTCCACCAGCAAAGCTGTCGGAGCCACCCCCTCGCGCGACAGAAGTCGCTAGGAAGATCGTAAAGCTCGGGCTCACGTCGCCCCCTCCAACAGCAAAGCTGTCGGAGCCACCCCCTCGCGCGACAGAAGTCGCTGGATTCCCACGGGCGACATAAGCCCGTAGAGGACCCAGGGCGTGAGCCCAGGGGTGAACACTACGTGGTTCTGCCGTACCTTTGAAGTGCCACGG # Right flank : CGCATCCACTGAAAAGATATTGTAATTTCGATGTGTTGCAAGGAGGGTTGTGCAGTTTTTCCCGCCCCCTTGCAGTTACCGCAGAAATATTCTCGAAATGTTTCACCATAGCCTCCGTTCTCCTTATTCTGTTGTCAAAGAGCCTGAGCGCCACGTATCCCGCGTCATCCGACATTACTCACAAATGATTTGTTCCTGCACGTCCTTACTGAACACCGACGACTATTTCGTATTTTCCAAGGCCAAAGCTCGTACCTTTGCCCAAATGGAATATCTCGCCTGCCCGCAGGAGAGGCAAAAACGGCTCAATATCCCCCTCGTAGGTTGCCTTGCCGATGATCCCGCCCATTTTCATCCGGACTCCCTGGCGGCTCGAATAGCGTTCCCAGTCCCACCAATGGGTGTGGTTTGCCGACATGTTGATTTCTCCCGCTGCCGCGATGATTGCCCTGTGGTTCCACGTTGCCTCCCGCTTTTCTCCGTGAAAGTAGGAGAGCAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATCCCTTCTATTTGAGGTCTTGGTTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 1140922-1142780 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI867150.1 Syntrophorhabdus aromaticivorans UI SynarDRAFT_SAI.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1140922 29 100.0 32 ............................. GCGCAACGGACGAAACTTTTGTGGCAGAAGGC 1140983 29 100.0 32 ............................. TTTTGGGGCACGGGACTGGAATACCAAGAAAA 1141044 29 100.0 32 ............................. CCGCGCAGGTGGATGCGGAAAAAGAAGAGGCC 1141105 29 100.0 33 ............................. GAGGAAAAAATGGCTGACGTATTGGAGCGTATG 1141167 29 100.0 32 ............................. TCATAAAATTGATGAATCGCTCATAGGGACAG 1141228 29 100.0 32 ............................. GTCAGCATCTCAGCTCCCCGGAGGTTTTTCAC 1141289 29 100.0 32 ............................. CTGTTGTGGCGTATCTACTCCGACAACCACAT 1141350 29 100.0 32 ............................. TTGCCTAACGTGGTGTTGAGCAGTCTGTTTTC 1141411 29 100.0 32 ............................. GAGGAGGAGAAAATCGAGAGGTGGCCTGATGC 1141472 29 100.0 32 ............................. GAGATCATCTGCCGGGTTGAAGTTGAAAACAG 1141533 29 100.0 32 ............................. GCATCTACGTACGAGTGGTCTATTTTAGCTGC 1141594 29 100.0 32 ............................. GCCTTAAAAACTTCCTCGCCGCTGCGGTATTC 1141655 29 100.0 32 ............................. GTGATTAAGTTAATGAATCGCTCATAGCCATG 1141716 29 100.0 32 ............................. TGCCCTATAACCATCAGGCAATACATGACCCA 1141777 29 100.0 32 ............................. CCGGGAGATGGATCAGGAGCAACTGGTTTATC 1141838 29 100.0 32 ............................. TCATCCCTGAGAAGTACGAGAGGGATCGAGTT 1141899 29 100.0 32 ............................. TCAACCGTGACCGTTATCCTGCGTGGTTTCTT 1141960 29 100.0 31 ............................. ATAGATGAGGACACCTACCGGTTTATGCTGC 1142020 29 100.0 32 ............................. TGGAAAAATCTGAAATGGTGAAAATGGAAATT 1142081 29 100.0 32 ............................. GGTGCCCGTTCCTCGGTTTGCAGTGCCCGGAT 1142142 29 100.0 32 ............................. ATCAGGGTCTTTTGCCAGCATTTCATTGAGTA 1142203 29 100.0 32 ............................. AGGTGGGACGGATAAGTGGCGTGATAGAGGGG 1142264 29 100.0 32 ............................. ATTTTTAGCGAGAAGCAAAGCCCCCAAAAAAG 1142325 29 96.6 32 ............................A ACGAAACAATGGAATTGATCCACAGAGGTGGT 1142386 29 100.0 32 ............................. GTTCCGGTCAATATGGACGTGATGGGCATAGG 1142447 29 100.0 32 ............................. AGAGTGGGAGGTCCTGGCCTGGGAGGCCATGG 1142508 29 96.6 32 .........A................... GCGATGTTCTCAGTTGTGATTTTACCGGATAC 1142569 29 93.1 32 .........A..................A GTACCAGTGGTTTTGCAGTGATGGGAGATCGA 1142630 29 100.0 32 ............................. AAAACCATGAGGTATGGAGTTTGTCATGTTGA 1142691 29 100.0 32 ............................. CATCCAGCTTCGTCCACATCGCCGCGGGCATG 1142752 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.6 32 ATGTTCCCCGCATCCGCGGGGATGAACCG # Left flank : CGTCAGGCCCGTCTCTTGCGCAGGATCATTCCAACAATTGAAGAGGTTTTGAGCGCCGGAGGGTTCCCGTTTCCAAAGCGGCCCGAGGAATCGGTCGCTCCGGCAATTCCCAATAAGGAGAGCATAGGCGATGCTGGTCATCGTGGTTGAAAATGTGCCTCCGAGGTTACGTGGACGGCTCGCAATCTGGCTGCTTGAAGTACGTGCGGGCGTGTATGTCGGCAATGTCACGCGCAGGGTGCGCGAGATGATCTGGGACACGGTCACAAAAGGGATGGAAGACGGCAACGCAGTGATGGCCTGGAGTACAAACACAGAATCCGGATATGATTTCTTGACGTGGGGTAGTAATCGGCGCGAGCCTGTCGAAATGGACGGATTGAAGCTGGTCTCCTTTTTACCCGAAATACTACAGGAAGCGGAGGAGTAATCCTGCCGGATTATTCGGTAGGATTTTGTTCTTTGAAAACTGAATATGATATTATAAGGTTACAATTAAT # Right flank : GACGCAGAAGTGTCCCTGGTGCGGCACAGCTAACAGCTTGTTCCCCGGTTATCTTCTGGCTGAGAACCGCCGCCACCCCGCCCATGTCGTTGCCTGCCAACATTGTGGATGTCTGAACGAATTCGATACTCAACCAACAAAGAATAAGCCATCGCGGTGTCCGGAGTGTGGAGACCAAGTCTTCATTGATAGCATTTTTGTCTGTCGTCGGGAAGTGTGACATAAGTCGCGACACCCCTCGAAGACTGAGAACAGCCAGAAGGGCCTTCGCTGCATTGAAACACCGGAGAAGGTGGCTGCACAGTATATCTCCCAGGGGGCACCGGGAGACGTTGACGGCACGTGCCTACCCCTCATGACTGCGGCCCGAAAGGCCTCATTACAATCCCCTTCGGGGTGATTCCCGGGCTTGCCCCAGAAACTTCTTACCCCCCTGTGCCAAGCTTTGGCACAGGGGGTACCCAAATCTTGGCTGCCTTTTCAGTTGTACGATATTTTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCATCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2370438-2375115 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI867150.1 Syntrophorhabdus aromaticivorans UI SynarDRAFT_SAI.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2370438 32 100.0 35 ................................ GAGGATATCGGCAAGTTCACGGAGGGAATACTGGT 2370505 32 100.0 35 ................................ CGTCTGACATTTTCGTGTCCTCCTGTTTTATTCGC 2370572 32 100.0 34 ................................ AATGCGTGCTGCAGGTCGATCAGCTTGTCGGCAT 2370638 32 100.0 33 ................................ CTCGAACGCCTCTCCCGGTAAGCGTGAGATAGC 2370703 32 100.0 36 ................................ AAGTAATACCCGCCTGCCACCAATGGCCGCCAGAGC 2370771 32 100.0 33 ................................ CAGAACCACGCCTTGATAGCGTCGCTGTCTCCG 2370836 32 100.0 35 ................................ ACTTTCCGTCTGGCCCCTGAATACGATGTCCGCAC 2370903 32 100.0 33 ................................ CTGCGTGACCCACCGGACCTCAATGTCGCTCTC 2370968 32 100.0 34 ................................ TTTCTACTCCTGCCCCGCCATTCGTAAAGGCTAT 2371034 32 100.0 34 ................................ GAACGTCCGCACGCTTTCCGGGTCCGTTTCCGGA 2371100 32 100.0 34 ................................ TTCAGGAGGTTCTTTGCGCTCCCGGGGGAGAGAC 2371166 32 100.0 34 ................................ CTGAATCTTAATAACATTGAACATCCCGCATTTG 2371232 32 100.0 34 ................................ CCTATGTTCAGGCGGAATGGGGACATTGTGTGGG 2371298 32 100.0 36 ................................ ATGGATTTGAACCCCTACGAAGGCGGCGACGAATAC 2371366 32 100.0 35 ................................ AGGTCTCAGAATTGCCACAAAGATGAATATCCCGA 2371433 32 100.0 33 ................................ ACGTTATGAAACGAACCAGCGTTTGAAAGTTGT 2371498 32 100.0 34 ................................ AAGTAATACCCGCCTGCTACCAGAGGCCGCCAGA 2371564 32 100.0 34 ................................ AACATATTCCCCGTTCAATTCGATGCCGATGTAG 2371630 32 100.0 34 ................................ AAGTTTCAGCGTGATAGTTCCGGCATCGCCTTCA 2371696 32 100.0 34 ................................ CTTGACAAGCAGCTCAGCGGTTTCCCGGTTAGCC 2371762 32 100.0 34 ................................ TTCCCATCCGCCGTAACTCTGGACAAAAGCGTGA 2371828 32 100.0 34 ................................ CTATGCATGGGGCAAGGTCGGTTATATCGCCGGC 2371894 32 100.0 34 ................................ CCTTAACGTCGATCACCGATACCTCGCCATCAGG 2371960 32 100.0 34 ................................ TTACTGGTGATCCTATCCTTGATGAACTTAACCG 2372026 32 100.0 35 ................................ CTACATCCTGTCCCGTTTTTTTACTCAACAGCTTA 2372093 32 100.0 34 ................................ AGTTTTACCGGGAAGAACACGAACTTTTTACCCC 2372159 32 100.0 34 ................................ GCACTGGAAACGTAGAGCTGATATCCAGCTGTAG 2372225 32 100.0 34 ................................ TATAAACCACACGACATCCTCATATTCACAGGGA 2372291 32 100.0 36 ................................ CTCCTCGACGACAACAAGGATGCCGACACGATGGAC 2372359 32 100.0 36 ................................ ACCGGTTCCGAACTGTCAGGGCCGCCGCTTATCCGC 2372427 32 100.0 34 ................................ CCTTGTCGGTTGCATTTTTCAGGACTTCTGCCGC 2372493 32 100.0 35 ................................ ACTGTACAACAATGTACAATCGTCGTCTCTTTTAC 2372560 32 100.0 34 ................................ CTGATAAGGATGTGCCTAATCAATTTGAGACTAG 2372626 32 100.0 35 ................................ GTTATTTATACAATATTATAACATAATGGGAATTG 2372693 32 100.0 33 ................................ TGAAGAAGATCCCCGAGGCCATATGGATGAGAA 2372758 32 100.0 34 ................................ CGGCTTACCCCAGTCAGTAAAAACCTGATCAGGG 2372824 32 100.0 34 ................................ CCTCTGCATCGCAGAGGGTAGAGCCGTTTGTCGC 2372890 32 100.0 35 ................................ GCCTCTACGTCTCCCTTTACGTCCACGGAAAGCTT 2372957 32 100.0 34 ................................ GATATCAAGGCTGAAATCAAGCTTGCCCTTTCCG 2373023 32 100.0 35 ................................ ATGACCCACTTGAAGGCGCCCGCTACCGTATTCAC 2373090 32 100.0 33 ................................ CAGAAATTCAGTTTCGATGAATGGCTCAGGATG 2373155 32 100.0 33 ................................ GCTGCGGGGGTAATCTTTGGTATTGAGGTGTCC 2373220 32 100.0 35 ................................ ACATTCCTACGGCTTTGGCCATGTCCGCCACGAGT 2373287 32 100.0 35 ................................ GATATCGGAATGCCCCGGTCCATAGCGTCCTTGAC 2373354 32 100.0 34 ................................ AGCGCAAAGGAGCTGGCCGGATTGCCGGGAATGC 2373420 32 100.0 34 ................................ AAGTTTACGTAATACATTGATATAATTGAAATAC 2373486 32 100.0 35 ................................ ATACTAAGCGACGGTGCCTGAATCGTGATATTGGC 2373553 32 100.0 34 ................................ TCTCAACCGCAAAGATTCAGCAGATGCGCATCGA 2373619 32 100.0 35 ................................ AACGAGACGGCAGGCTACTTTGTACCGGCAAATGC 2373686 32 100.0 35 ................................ GCTCTTACTTCCTGGGTCAACGGACAAACTATTAC 2373753 32 100.0 34 ................................ TTAATTTTCCGATACAACTGTTTATCCAGCTTTC 2373819 32 100.0 34 ................................ AGGAGACAAATCAACCTGTCGGATCAAGGGTTTC 2373885 32 100.0 34 ................................ TATGGAAGTTCGAAATGGTTCCCCTCAATAATTC 2373951 32 100.0 35 ................................ CAGCTGCTAGGTTGCCATCATCATCCTCATCTGTC 2374018 32 100.0 35 ................................ GCACATACCAGACTGTTGGTCACGATCAGGAAAAA 2374085 32 100.0 34 ................................ ATTCCCCCCCCTATGCCTGAAATGCATTGGCGAG 2374151 32 100.0 34 ................................ ACGTAACCACGCCTCTCGTATTCATGTTGCCCAC 2374217 32 100.0 35 ................................ GTATCCCACTTATCCAGGATGTTCTTAATGACCCT 2374284 32 100.0 35 ................................ GTATCCCACTTATCCAGGATGTTCTTAATGACCCT 2374351 32 100.0 35 ................................ CGAGGTATCCGAAGTTTTTAGCGAATGGGCGTTTT 2374418 32 100.0 34 ................................ CAATGTCATCGAAGGATTTTGCGTTCCGAATAGC 2374484 32 100.0 34 ................................ GAACATATCGACCTCAATATCTAGGACAATAAGC 2374550 32 100.0 34 ................................ GTACCAGTACCAGCCCTTTTTCAGGTCGTCGTAA 2374616 32 100.0 37 ................................ AGCGCCAGACGGGTACGCAAGACGACCGAGGCGCTGT 2374685 32 100.0 35 ................................ CGTCGCATAATAGCCGCCGCACCATCGGGAGATGA 2374752 32 100.0 34 ................................ ATTTATTTTGATGTGTAACGTTGCGGATCAGCGG 2374818 32 100.0 34 ................................ TTACCTCTCCGGGTGGTACAAATGAGGGATGTTT 2374884 32 100.0 35 ................................ GGGCCTGCCCGATGGAGGATGAGTCATGGCAACAA 2374951 32 100.0 35 ................................ ATCCAATATATCTTTATGGCGTGTATAGGTGAGGC 2375018 32 100.0 34 ................................ CTGATGAGGTTATTGCATACATCACAGCTAAAAC 2375084 32 90.6 0 ............................T.TA | ========== ====== ====== ====== ================================ ===================================== ================== 71 32 99.9 34 GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC # Left flank : GTAGAGAGGGGGGGGGCAGCATGTTTGTGTTGGTTAGCTACGATGTATCAACGAAAGACCCCAAGGGCGCCAGGCGCCTTCATCGTGTTGCAAAGGTCTGCCGGGACTATGGTCAGCGTGTTCAATATTCTGTTTTTGAGTGCATCGTTGACCCGGCGCAATGGGCCTTCTTCAAAGATCGACTGGTGAACGAGATTGACCCGGAAAAAGACAGCTTGCGCTTCTATTACCTTGGAGCCAACTGGCGACGACGTGTCGAGCATATAGGGGCAAAGGAGACAATCGACCAGGAAGGGCCGTTAATTGCTTGATTATTGTACATCGCGAACCCAAAGCGAACACGGATTTTCAGAGGGATTCGCGGCCGATGTAACCAATTGTTATACTGAGGGTTTTATTCCCTGCTCTTTGACAATTGAATAGTCATTGCGGACAATTTTGCGGAGATACGCACAAATGAAGAAAATAGGTGAACAAAATCAATAAGGCACCAAAGAACT # Right flank : AATGGACCCAGAAATTTGGACAGTATGTTAAGTTACACCCGAGTCTAAATTCTGGAGGTTTTTAATGAGTACCATGAGAACAAAACACGCACCCTCATTTAAGGCAAAAGTAGCGCTTGAGGCATACAAGGAAGAGAAAACATCCTCAGAGCTTGCCGGCCTCTACCAGGTCCACCCCGGACTTATACGAAACTGGAAGACGCTGCTCGTGAAGGGAGCTCCCGGGCTTTTCAATGGAAAAGGCCATTCCGATAAGGACCAGGAAAAACTCATCGAGGAGCTGTACCGCCAAATCGGCCAGCTGAAGGTGGAGCTGGACTGGCTTAAAAAAAAGTCTGGACTTACCCCATGAGGAGAAAGTGATGCTCATCGACCGGAACCATGAGATGATCTCATTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2375952-2375654 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI867150.1 Syntrophorhabdus aromaticivorans UI SynarDRAFT_SAI.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2375951 32 93.8 36 CA.............................. ACGCCGAGCTTATCGACAAACAGCGAGCCATTATGG 2375883 32 100.0 34 ................................ TGGCTCAAAACAACAACGGCAAGCTTTTTGACCC 2375817 32 100.0 34 ................................ TGCGCAATGATGCTGTAGATGTCCTGTGGTGTGT 2375751 32 100.0 34 ................................ GTATCTTTGCGAGGATACTCTCCGGGTTTTTGAG 2375685 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 98.8 35 GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC # Left flank : ACGGACTACCCAAATTTGTATTCCGTCTTTTCGCTTTCATTCAACTCATCCAATCCAATCAGGATTTCTTTTATTAGGGAGTACGGTAGATCTGGATTTTCTTCAGCGCATTTCCCCAGCCGTGCCCAATGTTCAATTTGGCCAGCTAAAGACCGGTGGTCAATCCGCCCGAATCTTCTAGCTTCATCCACAAGTTCCTCAGATATTCTTACTGCTGTTGCCATGATCGTTCCTCCGGCAGTTTATTTATTGCAATGTGTATTCATTATATATCATTATGTAGCACAATGCAACAACAGCTCTCTCTCATTCTTAGGGGGATTATAGTGGACCCGTCTGTCAAGACAATTTTGTCCCAAAGTTAAGTTACACTCCTGTGCGAAATTGTATCCACTATGAATCATTTCCACAGTGATTGTTGCCTCTTTCCAAAGTACACCTCCGCCGGGGGCGCGACTTGAACCGGCCATAAAAACCGTTGTTCTGTGGTCGTTTCAATC # Right flank : ACTCGTTTATAATAGTCATCGTCCGTAGTCTCACGTCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAATGAGATCATCTCATGGTTCCGGTCGATGAGCATCACTTTCTCCTCATGGGGTAAGTCCAGACTTTTTTTTAAGCCAGTCCAGCTCCACCTTCAGCTGGCCGATTTGGCGGTACAGCTCCTCGATGAGTTTTTCCTGGTCCTTATCGGAATGGCCTTTTCCATTGAAAAGCCCGGGAGCTCCCTTCACGAGCAGCGTCTTCCAGTTTCGTATAAGTCCGGGGTGGACCTGGTAGAGGCCGGCAAGCTCTGAGGATGTTTTCTCTTCCTTGTATGCCTCAAGCGCTACTTTTGCCTTAAATGAGGGTGCGTGTTTTGTTCTCATGGTACTCATTAAAAACCTCCAGAATTTAGACTCG # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2378185-2377357 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI867150.1 Syntrophorhabdus aromaticivorans UI SynarDRAFT_SAI.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2378184 32 100.0 34 ................................ ACCACAGAAAGAATCAAAAACATCCTTGATCTCC 2378118 32 100.0 35 ................................ CCCGTTTTGAGAATCTCAAACCACATACGCACCTC 2378051 32 100.0 34 ................................ TTTTTAAGGCGCACATACTGGGAGACAAAATCCA 2377985 32 100.0 34 ................................ GTATCTTTGCGAGGATACTCTCCGGGTTTTTGAG 2377919 32 100.0 34 ................................ ACTCGTTTATAATAGTCATCGTCCGTAGTCTCAC 2377853 32 100.0 36 ................................ ACCCCTGCGTCGACAAGCTGCGTACAAAAGCTGTGC 2377785 32 100.0 34 ................................ CTATCGTGCTTACCGGAAAAGGTACGATGGACAT 2377719 32 100.0 35 ................................ TACTCATTTTGCACCTCCTATTTTTTGATTATCTC 2377652 32 100.0 33 ................................ TTTGATGATGGCGTTTGGGGCGTTAACATTTGG 2377587 32 100.0 34 ................................ ACTCGTTTATAATAGTCATCGTCCGTAGTCTCAC 2377521 32 100.0 35 ................................ ATCACGAAGCGCACACATCCTCCTGTACGGTGGGT 2377454 32 100.0 34 ................................ GATCGGTAAACCGCCATCCAGACATTGTTTACGA 2377388 32 90.6 0 ............................T.TA | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 99.3 34 GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC # Left flank : CATCCTCTCCCGGAGGAGCCATACCTCCGGGTTTCAATCCACGCGCCCGCAGGGGGCGCGACTAATCGTGCGGGAGATCCCCGCCGATCTCAAGAAGTTTCAATCCACGCGCCCGCAGGGGGCGCGACGACAGTATGACTAGAGTGTGGTTTGATGTCCCTGTTTCAATCCACGCGCCCGCAGGGGGCGCGACAAGAGCTGACCACTATGTTCTTGGGGAGGATGCAGTTTCAATCCACGCGCCCGCAGGGGGCGCGACTACAGCGCCGCCGGCTAGTCTGACCGGCGCAAAAAAGTTTCAATCCACGCGCCCTATAGTGGACCCGTCTGTCAAGACAATTTTGTCCCAAAGTTAAGTTACACTCCTGTGTGAAATTGTATCCACTATGAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTC # Right flank : ATGGACCCAGAAATTTGGACAGTATGTTAAGTTACACCCGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCACCCTGTCGATCCTCTTCCAGTCGATCAGGGCATCGATCCTGTCGAGAAAGGTATTGGCATGACCCCTCTGCTCTATGATGTAATCGGCAAATCCTTTGGTGGTAAATCTGTCGGTCACGGATACCTCCTTCTTGTCATGAGAAGGAGGTAATATACCATATATATCAATTAGTTACAAGTCATTTTCGGATATTTTACCGTGCAAAGGTCTTATATCGTCTTGCCCTTGGGCGTGACTGTCCTTGCTACTTGATGAGATATTTCTATTTTGGGCCTTAGCCGGGTGAGAAAGAGTAAAAAGACAAGTGATGCCACAAGGCTCGACAAAACCCCGATCAGGATTGACTGCAG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 2378357-2378855 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI867150.1 Syntrophorhabdus aromaticivorans UI SynarDRAFT_SAI.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2378357 32 81.2 36 .A..G.T..A..TA.................. TTTTTTGCGCCGGTCAGACTAGCCGGCGGCGCTGTA A [2378369] 2378426 32 100.0 34 ................................ TGCATCCTCCCCAAGAACATAGTGGTCAGCTCTT 2378492 32 100.0 33 ................................ AGGGACATCAAACCACACTCTAGTCATACTGTC 2378557 32 100.0 34 ................................ TTCTTGAGATCGGCGGGGATCTCCCGCACGATTA 2378623 32 100.0 35 ................................ CCGGAGGTATGGCTCCTCCGGGAGAGGATGGTGGT 2378690 32 100.0 34 ................................ GATGGCCTCTTGCCGTAGTCGCAGATAACCCTGT 2378756 32 100.0 36 ................................ TATACGTCGGAGAAACGTCTTGTTTTGAAACAATCC 2378824 32 93.8 0 .............................T.G | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 96.9 35 GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC # Left flank : AGACTACGGACGATGACTATTATAAACGAGTGTTTCAATCCACGCGCCCGCAGGGGGCGCGACCTCAAAAACCCGGAGAGTATCCTCGCAAAGATACGTTTCAATCCACGCGCCCGCAGGGGGCGCGACTGGATTTTGTCTCCCAGTATGTGCGCCTTAAAAAGTTTCAATCCACGCGCCCGCAGGGGGCGCGACGAGGTGCGTATGTGGTTTGAGATTCTCAAAACGGGGTTTCAATCCACGCGCCCGCAGGGGGCGCGACGGAGATCAAGGATGTTTTTGATTCTTTCTGTGGTGTTTCAATCCACGCGCCCGCAGGGGGCGCGACGACGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATTCATAGTGGATACAATTTCACACAGGAGTGTAACTTAACTTTGGGACAAAATTGTCTTGACA # Right flank : GAGTGGACCCGTCTGTCAAGACAATTTTGTCCCAAAGTTAAGTTACACTCCTGTGTGAAATTGTATCCACTATGAATCATTTCCACAGTGATTGTTGCCTCTTTCCAAAGTACACCTCCGCCGGGGTCATGTAATTGAGAGACTGGTGAAGTCGTTCGTTATTGTAGAGAGAGAAGTAGTTCCCTATACCCCGCCTCGCATCTCTTACGGTATGATAGTCATGGATATAGACTTCATCATATTTGAGGGATCTCCAGAGTCGCTCGATAAAGATGTTGTCCATTGCCCTTCCTTTGCCGTCCATGCTGATGAGAATGGCCTCATTGAGCAGTATGTTGGTAAAGTCTCTGCTGGTAAACTGTGATCCTTGATCCGTATCGAAGATGTCCGGTTTTCCCAGGGCCAGCGCCCTCTCAAGGGCTCGTATGCAGAAATCTGCTTCCATAGTGGTAGACAACTCCCAGGAGAGCACGTACCGGGAGTGCCAGTCCATCACCGCG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,1.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //