Array 1 600768-601128 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNYQ01000001.1 Mesocricetibacter intestinalis strain DSM 28403 Ga0244706_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 600768 32 100.0 35 ................................ TAAGCGACAAATCCCAATCCTTTTGGGTGAGGGGT 600835 32 100.0 33 ................................ AACCAACCTACACTTGAGGAGTATAACAATGCC 600900 32 100.0 34 ................................ ATCACGGAGATCGCCGGCCTCTGACATGCGCTTA 600966 32 96.9 34 ..........T..................... TAATACTTTGGGATAACCATTAATGAGGGCTTCT 601032 32 87.5 34 .......T....T.............CT.... TCTACCTTATCAGTGTCTTTTGTTGAAAGTTCTT 601098 31 78.1 0 ...-......T...A.....A...A..A...T | ========== ====== ====== ====== ================================ =================================== ================== 6 32 93.8 34 GCAGCCACCTGTAGGTGGCTGAGTGTTGAAAC # Left flank : CACCTATATCGCTTCGGGTCGTTAGCTTAGTCGGTAGAGCAGCGGACTCTTAATCCGTTGGTCGAGAGTTCGAGTCTCTCACGACCCACCACTTAATCTCAATAAGAGCAAATTTATAAATTAATCGGATCTTCTGTTTTTTCTAAATAACTGCTGATTGCGCCGAAGTTTGAGCTGATTTGAATTTTTCTCCGGATACAGTAGATATTTTTACCTCACTAAATATATCCTGTACCAATGAGTATATGGAGCCGAAATCCTTAAGTGTAAAACTAATGATAGCTATCGGTAAGAATCGCTTGATTGTATACTTCGCTAACCTATACTTCTCATTCAAACACCGCTAGCCTAGCGATCTTGGAAAATTGTTAATAATCAATAAATTATAAAAGCATAATATGGGGATAAATCTCATGCTATACTGCTAATCGCTTTTATATTTGAGGTTAGCGAATCGAAGCCTATAAAGCCTGATATAGCAAGGCCTTAATATATAGGGT # Right flank : TATTTATAGAGGATTATCGCTTGAAGGCAGAATATATGATTATCAACTAAATTATTAATAAGGCTCGCTACCCTGTGCTTTTTATAGCTGAACTTAATCACATATAAAAAAAGAATGATTATTTTTGAAAATTTTTGTGCTAGTCTTATTTTACCTTGCAATGTTGGATATTGCTTTGGCCGAAATATGGAGTGATTAAAGTTTTATCTATTAGGTTGCTGGGCTGCCGCTTTTATTGTGCTTGGGCTGTAGGCTGGAAAATGCCAGCCCTACTGAATTGCCGAAGGGGAAATAAGGGCATATGGTTTAGTTTTGATATAAGGGTATTCTATGTATTTTGAAATTTATAAAGACGCTAAAGGTGAATTTCGCTGGCGTTTAAAAGCCGGTAATCATGAATCTATTGCAACTAGCGGCGAAGGCTATGCAAGCAAAAGAAGTTGTCAGCATGCGATAGATTTAGTCAAAGGTACCAACGAATCGACATTAGTGAAAGATTT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTGTAGGTGGCTGAGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 101321-102737 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNYQ01000005.1 Mesocricetibacter intestinalis strain DSM 28403 Ga0244706_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 101321 32 100.0 34 ................................ AGCTGCGTAAGTAATAGCACGACACAATCCATTT 101387 32 100.0 33 ................................ AGCCTCGAAATGAGCGGAAAGCTGATGGTGGAG 101452 32 100.0 34 ................................ CTCCGAATATTAAAACCCAACTGGCGATGATGTT 101518 32 100.0 36 ................................ GTCATTAGTCATATCTTTGCAACTGGATTTATTGAC 101586 32 100.0 34 ................................ ACATCTGAGCGGGTCAGTGCACGGTAGCTATTTA 101652 32 100.0 33 ................................ TGATAAAAGAATTAAATCTGAAATTGATGGTTT 101717 32 100.0 35 ................................ GGATAACCGCGGCTTTGAGGCGGATATGTTAGAGT 101784 32 100.0 35 ................................ ATCTTCATCTTCAAAGACTTCTTCTTGAATTTCTC 101851 32 100.0 34 ................................ ACTCACAAAATAAGCACACAGCGCATTACGACTG 101917 32 87.5 34 .....T.......T..A...A........... ACTATTTCGGCTCATAGATAATGCGCATCGGAAA 101983 32 90.6 36 .....T.......C..A............... GCAAAGAACAGAAAAAAATGCTCCATTTTTGCAATA 102051 32 90.6 33 .....T.......C..A............... AAGCCCTCCTACCGGAAATTTGTCAGGGGGAAG 102116 32 90.6 33 .....T.......C..A............... CCGGACGATGAGACTTACATTGAGGCAAAAAAA 102181 32 90.6 34 .....T.......C..A............... TGGTGGAGTTGATTTGATTGTAGGTGTCAACGAT 102247 32 90.6 34 .....T.......C..A............... CATGTATCCCTGGTAAACTGGCCTACGCCAATCG 102313 32 100.0 33 ................................ TCGTTCTATTCGTTCATACATCTTACGGGCAAG 102378 32 96.9 33 .....T.......................... TGCCGCTATTTCCGCATCGATTAAATCTTGCGT 102443 32 87.5 35 .....T.......C.TA............... ACCCCGTGCATCGAGCAATAAGGCGACCAACTCAC 102510 32 84.4 33 ....TT.......C..A.A............. TGTAGTGGGTAAGCCAACCATTGCTCAAACCAT 102575 32 87.5 33 .....T.....T.C..A............... CTGGTCGCAATTAAGCAAAGAGATTCATGCTGC 102640 32 96.9 34 .....T.......................... TGGTTGTCGGTTTAGGCGTGCGTTATATGCTTGG 102706 32 90.6 0 .............C..A.......A....... | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 94.7 34 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TAAGGAGTAAGCCCCGATGCTAATGTTGATTACCTATGACGTATCCTCTACAAGCGAAGGTGCCGAACGTCGCCTGCGACAAATCGCTAAACATTGTTTGGATTATGGTATACGTGCACAATATTCTGTTTTTGAATGTGATGTTACGCCTGATCAATGGGTGGTATTAAAAGATAAATTGTTAAAGACCTATGATCCCGATTGCGACAGCTTACGTTTCTATCATTTGGGTAGCAAATGGCGTAGTAAAGTGGAACATCACGGAGCAAAACCCGCAGTGGATATATTTAAAGATATATTGATTTTGTAAATCGCTAACCTATGGTTATCATTAAAAAGCCGGTAGGTTAGCGATGGTAAAAAGTTCTTTAACAATCAGGATATTATAAAAATTTAGTATAGTAATATGCCTATGCTATACTGCTTATCACTTCCTATATTTAGGGTTAGCGAATCAGGGGCGATAAAGCCTGATAGCATAAGGCTTTAAAATATAGGGA # Right flank : CAAGTGTTTTGCAAATTTAAGGGCTACTGAGTATAAACCAAACCTTAACCTCGCCGCTTATTTATAACCCCTTATACGTTGTTATGCCTTTTTCGCTTAAATTAAAATAAAGCGGAATTTGTAATAGTTAAAAATCATAAATTTTTGACCGCACTTTGGTTGAAAGCGCGTTATAATTCAGAGGTGATTTCTAAGCAGACAGGAGTAAGCGATGTCCGATGTAAATAATCTTCAGAAAGCATTAAATGACACGGTGGCGGATACGGTGCGGTTGACACAGTATAGCCACGGTGCCGGTTGCGGCTGTAAAATTTCGCCGAAGGTACTGGAACGGATTCTGCATACGGAAATGGAAAAATTTGCCGATCCCCATTTGCTGGTGGGTAACGAAACCAAAGATGATGCGGCGGTTTATGATATAGGTCAGGGAATCGGGATTATCAGCACCACCGATTTTTTTATGCCGATCGTGGACGATCCCTTTGATTTCGGGCGTATTG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : GCAGCTGCCTTCGCGCAGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //