Array 1 25-522 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOQH01000051.1 Caviibacter abscessus strain 151011837 contig_149, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 .................................... ATGTCCAGGTTTCTGAGTTGTTCATTCCAA 91 36 100.0 30 .................................... CAATGTACCTCGCGTTGTCTTTCAGAAGCT 157 36 100.0 30 .................................... CGTTTTATTTCCTCTCTTTCTTTTTCAAGA 223 36 100.0 30 .................................... ACTTCCTTTTCAATATCTAAATTTCTTAAC 289 36 100.0 30 .................................... CAAGTTGCAGGTTTCATGATGAATTTGTGT 355 36 100.0 30 .................................... TGTAGTTATATATATATTTAACAGCTCTTG 421 36 100.0 30 .................................... TGTATTTTTCTTTTCAATCTAATTTTCTTA 487 36 97.2 0 .........................T.......... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.7 30 GTTTTATATTATTCAAATTTATCAAGAGTCTGTATC # Left flank : GATGTGTATAAGATATAGCTATTAG # Right flank : ATGCATTCATCGTTTAAATTGTATATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTATTCAAATTTATCAAGAGTCTGTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 11421-7755 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOQH01000059.1 Caviibacter abscessus strain 151011837 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 11420 36 100.0 30 .................................... TTGGAACGAGCAATTAAGGAATCTTGATAT 11354 36 100.0 30 .................................... ACAAATGCGAACAGTAACAAATGAAACTGA 11288 36 100.0 30 .................................... TTAGCGAAAGTCAGAGCAGGGAACACGCAA 11222 36 100.0 29 .................................... GAATATAAAATTGTTTTAGGTGGAGAATG 11157 36 100.0 30 .................................... GATTTAATCGAAAATAAAGATATTGAAACA 11091 36 100.0 30 .................................... CTATGTCGCGAAACCGAGAATTGCTTAGAC 11025 36 100.0 30 .................................... ACAGTTACAAATGGGCTAATCCAACAACCA 10959 36 100.0 30 .................................... GTTCATATACAATTTAAACGATGAATGCAT 10893 36 100.0 30 .................................... TAATAAAATTAGATGGAAAAGAAAAATACA 10827 36 100.0 30 .................................... CAGGAGCTGTTAATTATATATATAACTACA 10761 36 100.0 30 .................................... ACACAAATTCATCATGAAACCTGCAACTTG 10695 36 100.0 30 .................................... GTTAAGAAATTTAGATATTGAAAAGGAAGT 10629 36 100.0 30 .................................... TCTTGAAAAAGAAAGAGAGGAAATAAAACG 10563 36 100.0 30 .................................... AGCTTCTGAAAGACAACGCGAGGTACATTG 10497 36 100.0 30 .................................... TTGGAATGAACAACTCAGAAACCTGGACAT 10431 36 100.0 29 .................................... TAATAGAATTAAATAATAAAGAAAAATAT 10366 36 100.0 30 .................................... TCTTGAAAAAGAAAGAGAGGAGAGAGAACG 10300 36 100.0 30 .................................... CACTTTTAAAAGAGCAAGCTGGAAAGTTGA 10234 36 100.0 30 .................................... TTCTAAAAGTAATATGTGAACCCTAAACGT 10168 36 100.0 30 .................................... CAGGAGCTGTGAATTATATATATAATTATA 10102 36 100.0 30 .................................... TTTAAAAAAATAAAAGATTGTCATCAAATA 10036 36 100.0 30 .................................... CACTTTTGAAAGAGCAAGCTGGAAAGCTAA 9970 36 100.0 30 .................................... ATAAAATCATTTATTTTAATCCCTGCTTTT 9904 36 100.0 30 .................................... TAATAAAATTAGATGGAAAAGAAAAATATA 9838 36 100.0 30 .................................... AGAGATTTAAAGACCTACCACACGTAGAAA 9772 36 100.0 30 .................................... TGACAAACTCGATTGGACACCTAAAACTTG 9706 36 100.0 30 .................................... ATAAAAATAGAGGTTATAAAAGAATTTTTT 9640 36 100.0 30 .................................... ATGAGAGTAAAACCTCGTTACATGGAACAG 9574 36 100.0 30 .................................... TTACTTGGGATTTCCACTAACAACTTATAA 9508 36 100.0 30 .................................... CAATTTAAAAATACAAACATATTTAAAATA 9442 36 100.0 30 .................................... ACCACACGAAATTTTTAAAGAAAACCTTTT 9376 36 100.0 30 .................................... GGATGTGGGAAATGTCCAAACTGTAGAAAT 9310 36 100.0 30 .................................... GTGTACTAGACTACTTAGGTATACCACTAT 9244 36 100.0 30 .................................... TAAACTGTAAACACAAATTCATCATGAAAC 9178 36 100.0 30 .................................... TATCATTTATATTTTAGTGTACCTAAAGAT 9112 36 100.0 30 .................................... TTTTTTCATCACTTATTATATCCTGTTTTT 9046 36 100.0 30 .................................... ACGTCACAGAAAAAAAACAATATATTTTAC 8980 36 100.0 30 .................................... GCTTGAATATCTTCTTGAAAAAGAAAGGAG 8914 36 100.0 30 .................................... GAAGTGGACAGCTACAACTACAACCAAGTA 8848 36 100.0 30 .................................... AGCAATTCCATTAACACTACAACCGGACCC 8782 36 100.0 30 .................................... ATTAAATAGTAAACTAAACATAGAAACTGT 8716 36 100.0 30 .................................... AGTCAGCGTACGCCGAAGCTGAAAGGGATA 8650 36 100.0 30 .................................... ACCAAGTATAAATGATAAAATACTTAAAAA 8584 36 100.0 30 .................................... TGAAGAGGCAGGGCTAAAGTTAATGAGCCA 8518 36 100.0 30 .................................... GATGTATTCACAAATTGAAGAAAAAGCGAA 8452 36 100.0 30 .................................... AGAAATTAAAGAAGTAAAAACAGGTGTTAA 8386 36 100.0 30 .................................... TACTACAATAAAAATGAATTGCTAGAATTA 8320 36 100.0 30 .................................... AACAGTAAAAAAGATGGAAGGGCGAACAAT 8254 36 100.0 30 .................................... AAATTTATTTAAAGCTACAAAAAATAGTTA 8188 36 100.0 30 .................................... TTAGAAAGTTCATTGATTTTTTCATCCATA 8122 36 100.0 30 .................................... GAAAAATTGTAACAAATTGCGATGGTTATA 8056 36 100.0 31 .................................... GCTTAGATCGTGTAGTCTCATAACGGGAATA 7989 36 100.0 30 .................................... CGCAATTGATTGGAATGACAGACCTAGTTA 7923 36 100.0 30 .................................... TAATAAAAAATATAGATGAAATAAGAGTCG 7857 36 100.0 30 .................................... ATTTCTTAAAAATCCAAGGTGGGTATGATG 7791 36 91.7 0 .............................G..G..T | T [7757] ========== ====== ====== ====== ==================================== =============================== ================== 56 36 99.9 30 GATACAGACTCTTGATAAATTTGAATAATATAAAAC # Left flank : AATGCAAAGGTTCGATATAATAAAAGAGAATATACAGTACTTTATTCTATGGAATTATTAATAAAAAGCTACTTGAGTTTGCTTGAAGAAGGGGTTGATGAACTGGCAATACCTGAAATAATAAAAATTGATTTTAATGAATTATTTAATGAGTTATAAAGAAATGAGATTAATTGTATTATTTGATTTACCAGTTCAAACTCAATTAGAAAAAATACAAGCTCAAAAATTTAGAAAAAACTTAATATCAGAAGGATTTTTAATGATGCAATTTTCTTGTTATTCTAGATTTTGCAGAAATGATTTTGAATTAAATAGATATTATAAAAGAATAAAAAAATTATCAAACAATTTAATAGGTGGTGAAGTAAGAATTTTAAAAATCACTAACAAACAATATGAAAATATGTTAATATTAGTAAAAGAACCAAAATATTCAGAAATAAGAGTTGGTAAGTGTCCTTTAGTAGTTTTTTAGACTCAAAAAAATTTTGCTAGAG # Right flank : TGCATAAATTCATAATTTGTAATAAATAAAATAATTTTTAGGAGTAGATTTTTGAATATAATATTTGAATATGAAAATAACTTGAATAATATTAGTTTTGATGACTTATTAATAATTGCTGGAGGAAATGGTAAAGGCAAAAGTAGAATTTTTAATTTATTATTATCAGGATTTGAAGGTAAAGAAAAAAGTAATTTTATTATTAATGGTACCGATGTTAAGAAAAATGAATATCATGTATTTGGAATTTCTCGTGATAACACTTTAGATAATGAACTAAAACTTTCATCAAAAACATATATGTTGAATAAATTGGAAGCTATAATTGAATACATATCAAATGATAATTTATGTGTAGAATTAAATAATTATTTTGATGAAATTAATTCTATTTTAACATCAGAAGTTTTAAATAATACAAAAATAAATATAAATTACAATATTGATAAAATATTTTTACAAATATTTAAAAGTATCGAGTATAAAATTGATGACATTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAGACTCTTGATAAATTTGAATAATATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //