Array 1 105646-105485 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCI01000030.1 Pseudoalteromonas rubra strain S2676 S2676_S28_L001_R1_001__paired__contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================ ================== 105645 23 100.0 44 ....................... GTACCGTAAACTTCAAACGTGTTAACAGAGAAGTACCGGTAGCT 105578 23 100.0 48 ....................... CCCGTTTTCTGTTGCTTTTTACTTAATTTTTTCATTGTACCGGAAGCC 105507 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ================================================ ================== 3 23 100.0 46 CCGACTTTAGAGGGGATTGAGAC # Left flank : CGGCCGACAGCAGGCCATGACCGAATACTGTTCACACCTTCAAAAGCAGCGACGCCCAAACCTGACTAACTGCGAGCGCTTGTTGGGATAGAACCCCTTATCTCAACCATTTAAAATACAACTGCAACACTGGCAGAGCTCTATCGTGGGCGATCGCCTGCAATTGAGCGCAATACGGCGTTACTTGAGCGGTAGCCAGCCGGAATGTAGCTTAGCTCTGATATTCCTTACTTCATTTTTTGAAAAATGTTCAACCCGATTAGGCAAAGCTCGGCGCCAGAGCTTTGCTGGCTTTACGATTGGGTGTCCATGCTTTTTGTTTTTGTACGACGAGGCCTCGATCCGCTATAGTACTGGTGACCCCGACTTTAGAGGCTGAGAGCCGCCCGGAAAAAGCACCGCTTTTTCAGACTCGAAGGTGAGGCCCTGGACGGCCGAACTGGTTGGCGCTTCATGGATGAATCAACGATACCACTGTTGAAATGATTGGCTAAGTGACC # Right flank : ACTCTTGGGTTTCTCCCATATGCTTGCATATTACGTACCGGAAGCCCCGACTTTAGATGCTGAGAGCCGCCCGGAAAAAGCATCGCTTTTTCAGGCTCGATGAGTGAAAATCATGCGTTTTAAAAAGCACCGCTTTTTGCGTGATTTGAACACTGGAGGCAGGACGCCGTAAGCCAGTTTTGGTATTTTGCAGGGAAAGCAAAATAGTAAAACAGGCCCTGGACGGCCGATTCTGGCGAACGCACCGCTTAGCGCTTCATGGATGAATCAACGATGCCGTTGTTGAAATGATTGGCTAAGTGACCCCCGACTTTAGAGGGGTATTCTGTGTTCGAAATTGATACCACATCCAAACAACTCATTAAACTGCAGCGACAGCTGAAAGAGCTGCTTAAACCCAACGACAAAGCACACCTCTTCCCGTTATGCGGAAAATGCATGGGTAACCGAAAAGCAGATGGTGCCGGTCAGGTCACCTGGCCTGAGCGATTTTATTACTA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGACTTTAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 9301-9598 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCI01000010.1 Pseudoalteromonas rubra strain S2676 S2676_S28_L001_R1_001__paired__contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 9301 32 100.0 34 ................................ TGCGCGGGTGGTTTTGAGCTGCTGGCTGACGGTT 9367 32 100.0 35 ................................ ATTGCCAGGCGGCGAAAGAGAGACGGTAATGGAAT 9434 32 100.0 34 ................................ CTGGAGTATAAATGGTATCAAAAATAATCCAGGA 9500 32 93.8 34 ....C..........T................ ATCTTGCCTCATAGTTCTTACTCCAATGGTTTTA 9566 32 75.0 0 ....C.T........T.........AC.CCG. | T [9589] ========== ====== ====== ====== ================================ =================================== ================== 5 32 93.8 34 GCTGTGCTCCCCGCGCGAGAGGGGATTGAGAC # Left flank : ATCTGATCATTGAGAATCGCGATGGCTGCGATATGCGTTGTTACGATGGTGAGTCTGAAAACGCTTTGAACGGTATCAGCGAGAAGTCTCAAGTTAAGTTTACGGTTTTGGCTAAAAGTGGTGACTAAAGTATCGCCCTTGTACACTTGATATGGAAAGCTATGCAAGCAGGTTTAGTTAAACACCTTTTGGTCTGTAAGAAAGATACCGGCTCAAGGCCGGTATGACGGCGGAGCGGGCGTTTAACTTTAGAGATTTGAATCTGCCGTATTGTGTTTTGTCATTGTATGCTTGGGGCCAACTTTCCCAGTCAATCATTTTATTTGCGCTAACCCCTGGTTCTCATAAAACCCCGGGAGGTTAGCGCTTCTGTATGTTGATGTTTATTATGGTATTGTGTAATCTTGTTGCACAAAATTCAGTTGCGTTGGGCAATTTTGACCCAGGTTAGCGCAAAAAGCCGATTTTGGCCTTGTATAATGTGGGCCTTAAAGCAGGCC # Right flank : CTCGGAAAAAGCACTGCTTTTTCAGGCGTGAACGGTGAAAAGTCATGCTGTTTAAGCAACGCTTAAATGACTTTGAACACTGTAGGCAGGAAGCCGAAAGCCGGTTTTGGTGATTTGCATGGACAGCAAATCAGTAAAACAGGCAATGGATGCCGATTCTGGCGAACGCGCTACTTAGCGCTTCATGGATGAATCCAAAGCACATTGTTGAAATAATTTGCTGCGCTCCCCGCGTGAGAGTGTGAACGCCGCTCGGAAAAATCACCGCTTTTTCAGGCGTGAATGGTGAAAAGTCATGCTGTTTAAGCAACGCTTAAATGACTTAGAACACTGTAGGCAGGAAGCCGAAAGCCGGTTTTGGTGATTTGCATGGATAGCAAATCAGTAAAACAGGCAATGGATGCCGATTCTGGCGAACGCGCTACTTAGCGCTTCATGGATGAATCCAAAGCACATTGTTGAAATAAGTCGCTGTGCTTCCTGTACGAGAGGGGATTGAG # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCTCCCCGCGCGAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 90719-92030 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCI01000010.1 Pseudoalteromonas rubra strain S2676 S2676_S28_L001_R1_001__paired__contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 90719 29 96.6 32 ..T.......................... CCGTTCGCCGTTAGTCTCAGATTAATGTCGTT 90780 29 96.6 32 ..T.......................... CGTGTTGACATCGACTTTGCAAAGAAGGTTGA 90841 29 96.6 33 ..T.......................... TATTGTTACTGTTTCAGCGGCGCATACGTCGGC 90903 29 96.6 32 ..T.......................... GGTGCAACAACTGGCGGTGGTGGTGGGACGGA 90964 29 96.6 32 ..T.......................... GGGGAGGGTGTATGTGGGCAGGTATTTGGAAC 91025 29 96.6 32 ..T.......................... CCTGGCCCATACCGATTATATCTATCCCTCGA 91086 29 96.6 32 ..T.......................... GCCCACTTTACAGCGCCGCTGATGGCGTTTTT 91147 29 100.0 32 ............................. CAGGCTGCAATCAGAGCTTCCTCCCTGGTCCC 91208 29 100.0 32 ............................. GTACCGTTGTATGCCTTGATCACATGCTTGTT 91269 29 100.0 32 ............................. CTCTACAGCAGCAATAACCGTCATATCATTTG 91330 29 100.0 32 ............................. GCGAGCGTGGTGCAAATGGTCGTGATGGTGAG 91391 29 100.0 32 ............................. AATATGGTATAAAATCCTAAACACATGATTAC 91452 29 100.0 32 ............................. TTCAGTATTAGGGTTGGTTGTAGGATTTAAAT 91513 29 100.0 32 ............................. TAAACTGGATCCTTTGGAATCAACGATTCTGT 91574 29 96.6 32 .......................G..... AATGCTTGAGCCGCATGAGCTGTATGCTGCCA 91635 29 93.1 32 ..............T........G..... AGGTTTGGGAGTAATCATGGCACGCGGAGTAA 91696 29 93.1 32 ..............T........G..... TCCATTAATGTGTCCGGATTGATCTCGACTGA 91757 29 100.0 32 ............................. CAGACATTTGCCGATGACGTCAGAGACCTGGA 91818 29 93.1 33 .....T......................A GAGTAGAGGTTAATGACATGGTTCGCGTTTTTC 91880 29 89.7 32 ..........T.CA............... CGATTTTATGTCCAGTTGTCGCGCCGGTAATT 91941 29 82.8 32 .A..........CA.......T.G..... TTCATAGGCTTTTTTTGCATTGTGGTTTATTG 92002 29 86.2 0 .A...............T........T.T | ========== ====== ====== ====== ============================= ================================= ================== 22 29 95.9 32 GTGTTCCCCGCAGGCGCGGGGCTAAACCG # Left flank : CTTCTGGTTCGACACCCTCCAGCTGATTATTCTCAACGTACTCTTCCCAACCCTCACCGCACTACTGGGATATGTATTTGGCACCAGCAGGAATAATGGGGCGTAGAAAGGGTGGAAGAATGCAGGGTTTGTATATGGTTGCAAACTTTGCACAACAAGGGTGAATTCTGGCTTGATGGCAATTTTCTCTATCTGTTTGGCTTTTTACAACAGTATGTTTTGCGGTTATTGAAGCCGAATGGATGCTCCTGCTCACCTCGCCACTGGCGGCATTTTTAGCCGCGATACTGTTAGGCCTGATCTTGTTCTATTTATTTATGGCTCTGGCTGTCACTCTTTTTTCTTGTCTACTGTGTTGCTACATTAAACAGATGCTCTTTAAAAACATGGCTAAATAGCGAATGAATCAATGCAAGATCTGACCTGATCTTGTACCTAATATTTTCGGTAACTTTTTCAATACGACTTTTCTTTAATGAAAACAAGTATATAATTTTAGA # Right flank : TGGTTCGAGTCGGTTATGGGTTGTACGACTTCGAAATCACAGGGGGTTGAGTTATCTGTTTGGGTTGAATCAGCACTTTTTGATGGTTTGGTGGTCGATCTCGGCTCTTCGTTTTTTTCAAAGTGTTCTTTGTACTCAAAGTCATGTAAGTTGGCGTGGACAACCTCTCTGACAGGGATGTTGATGAGGAATTTTTCTAAGTCTAATACCTCTTCATCTGATTGGTTTGCTTCTGGGTTGTCTTTGTTGCTGGTTTCAATATCTGACCAGGCGGAGGCATAATTGGTGACCAACTCAAGGCGTAACTCGTCTTTACACCTGTAACCACTCTTGAGTGGAAGTACCATAAAATCGTTCATGTGGTATCCCAGATTAATCACATAGCCAATATAAACCTTGCGGCTTGAAAGCGTAAAAGCAATTGGCAGCCCCTTGAGCATGCTGTTGTGGAGTATACCTGTAAACTCGGGCGTATCATCAGTGCCAGACAAGCTAAAGTA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGCTAAACCG # Alternate repeat : GTTTTCCCCGCAGGCGCGGGGCTAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGATCCCCGCAGGCGCGGGGCTCAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 103878-105373 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCI01000010.1 Pseudoalteromonas rubra strain S2676 S2676_S28_L001_R1_001__paired__contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 103878 29 100.0 32 ............................. CCCTTTTTACCGCAGCGTTAGCTGCTATGGCC 103939 29 100.0 32 ............................. TCTACAAAGAGACTGGCGATGTGGCTAAAACC 104000 29 100.0 32 ............................. AGTCTCAGATTTCAACACAGCGCGCGCAAATT 104061 29 100.0 32 ............................. CGTATTAATTGCCTCAGCATCTATCTCACTGG 104122 29 100.0 32 ............................. CCATTGCGGCCGGTGCGGCCCTGTTGTTCAAC 104183 29 100.0 32 ............................. TGTTGGCGTAGCTTGGCAACTCAAACACTCCT 104244 29 100.0 32 ............................. CAGGTGTATTTCATTTGTTATTTTGGATAGGT 104305 29 100.0 32 ............................. TTCCATCTCCACTACCAGAACGGGCCGCAGCT 104366 29 100.0 33 ............................. TCAACGTCCATTTTCCCAATGGCCTCTACTAGT 104428 29 100.0 32 ............................. GTCGGCCCAAAACGGCTCCTCTGAGCGATTAC 104489 29 100.0 34 ............................. GCATTCAGCTCGCGAAACGTGCTGTTCGCGCGGC 104552 29 100.0 31 ............................. TAAGGGCCGTATTTGGCGGCTGACTGCTCGC 104612 29 100.0 32 ............................. CTTATGCGAGTGCGATACGGGCCAAATAACGC 104673 29 100.0 32 ............................. TAAATTGAAACTTTCCCCATCCTACATAGGCC 104734 29 100.0 32 ............................. GGACCAACGGCCAGGCAATGTTACCTGACGTA 104795 29 93.1 32 ............CA............... CATGCTGTTTGCCGTTGTAAACGGCCTTTATA 104856 29 93.1 32 ............CA............... CACGCACGGGAGCTGGGCCAGCGTTGTCGCAT 104917 29 93.1 32 ............CA............... GATGCACATTCGATGGTCAAACAGGCTGTAAA 104978 29 89.7 33 GC..........C................ TTCAAAACGAACTCAAATCAACCATAGCACTTC 105040 29 89.7 32 G.A.........C................ CAACCTGTGACAGCGCCTCTGTGAGTGCATCC 105101 29 89.7 32 G.A.........C................ ATCTCTCGTTGGCTCAATACCGGTGTTGGTTC 105162 29 93.1 32 GC........................... TTCCTGGGCGTAAACACGGTATTAAACAGCGA 105223 29 89.7 32 GC..........C................ ACAAAGAAACATTTTCCGGGCTGGCTATACGA 105284 29 89.7 32 G.A....................A..... CCCCCAAAACCTAACGCTCATGGGCGGGCTGA 105345 29 82.8 0 G...........CA........CA..... | ========== ====== ====== ====== ============================= ================================== ================== 25 29 96.1 32 CTGTTCCCCGTATGCACGGGGCTGAACCG # Left flank : TTGGTGACGAGGGCCATCGCAGCGGAGGCTCATTATGAGTATGTGTATGGTTGTGACTGAGGCGGTGCCACCGAGATTAAGAGGTCGCCTGGCAGTATGGCTGCTGGAGATCCGTGCGGGTGTGTACGTGGGGGATGTAAGTAAACGCATTCGCGAAATGATTTGGTTTCAGGTGAGTGAATTAGCTGAAGACGGCAATGCGGTCATGGCCTGGGCGACCAACACCGAATCGGGTTTTGATTTTATCACCTATGGTGAAAATGCCAGAATGCCGGTGGATTTTCATGGCCTAAGATTGGTGAAGTATACCCCCAGATCTGATGATAATCAGGGAGGGGATTAGCGAATTATTTCCGCCATTCTATCTGTGATTTATTGCTCTTTAACAAGTTGGATATTGAGATTTAAAGGCTCAAAAAATAGATACATTTGTACCCAAAAATTTCGGTAGATTTTAAAGTGTGTTTTTTCTTTATAAAAAACAAGTATATAATTTTAGA # Right flank : GTAGGCATTTGCTGTGAAAGAAGGCGATAAGCTTTTCCGGCCACAAAGCGAACGCGTTAAGATCTGGTAGTCAATTGGCCAGGTTTCAGCTGTTTCTCCAGGCGGCACAGCCGTGCTCGTCTGAGGGAGTCACTGCCTAGCCTGGCTCTGTGCAGAGCTTATATCGCGATGGTTAAGTTTCCGATTCTGGTTGTGCTCTTGGCATGAATTAAAAAGGGCGCCACTTAACGGGCGCCCTGTTTTTTATGTCGCGTATTGCTGATGTAGAGTTTAGGTTAGTTCAGCTTCTGCCAGCTGACATAGCTCATGCAATACTTTGACATAAGCGTGTGCCAGCCCTTCAATGGTCTCCCGACGGTGAATGGCATGACTGAAAGACCAGTGGAAGCTGATCTGTCCCTGGTTCACAAAACAGTCGATCCCCAGTAAGGCAGAGCGATGGGCTTTCGGGCTGTGTAGCGGTCCGATGGCGTCATCGCTAATCACCATCTTGGGCGATG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTATGCACGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //