Array 1 45030-43722 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOGI01000002.1 Actinokineospora terrae strain DSM 44260, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45029 28 96.4 33 ...........A................ CCGGCCGTGGTAGGCCAGCACGATCCCGTCCAG 44968 28 100.0 33 ............................ GCGACCCGCCTGCTGTGGGCGCTGGACCACGCC 44907 28 100.0 33 ............................ GAACCTCGGGTTCGACTGCGACGCCTGGATCAG 44846 28 100.0 33 ............................ GTCCGGCCCTGCCGTGACGGGAGGTGATCGGGT 44785 28 100.0 33 ............................ CGCGTTTCTCGCCGAGGACAAGCGGAAGGTCCA 44724 28 100.0 33 ............................ CCTGTTCGAGCTCCTGTCACAGGCTGGCGAGGC 44663 28 100.0 33 ............................ GTGCACGATGGGGTTGCCCTCGTCGAACAGGAA 44602 28 100.0 33 ............................ CGGCAAGGGGTGAGTGGTGGCCACGTCCTACGC 44541 28 100.0 33 ............................ CCGTTGGTAGGTGAGCATCACCCCAGCTCCTTG 44480 28 100.0 33 ............................ GTTGTCCGCACAGCTCGGGCTCACCGAGGAGGA 44419 28 100.0 33 ............................ CAGCGGCAGCACCGACGCGTGGCCGATCCTGCG 44358 28 100.0 33 ............................ TGCTGTGCGTGTGCGAGGCGTCGGCCTTGCCCG 44297 28 100.0 33 ............................ GATGGCGTTGTCGAGCGTGCGGGCGATGATGTC 44236 28 100.0 33 ............................ GCTGACCAGCCACCGCGAGTCGGCCGTGCAGTA 44175 28 96.4 33 ............T............... GTCGATCGAGAACTGCCCCACAGCTGGGCTGTG 44114 28 100.0 33 ............................ CACCGCGACCACCGCGGCGACGTCCGCGATGGG 44053 28 100.0 33 ............................ GGCCGCATCAGCAAGGTCAGCCACCCGCGGCTG 43992 28 100.0 33 ............................ CGGGGACTCGTCGTGGTCGTCGATCCTCGACGG 43931 28 96.4 33 ..................A......... GCTCACCGCGAAGGTCTCTGGGCGCCGCGCGCA 43870 27 96.4 33 ....................-....... TCGGCGTCGGTGGCGTACGACGGAGTCTCGTGC 43810 28 100.0 33 ............................ GGGCCTCATCCCCATCCCGGCGCAGACCTCCAC 43749 28 96.4 0 ....C....................... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.2 33 CTCGACCCCGCGCAAGCGGGGATCTTCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCA # Right flank : CGGCCACGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTGGATGAGGGCCCAGGTCGACCCCGCGCAAGCGGGGATCTTCCGTACGCCGAGTCCCAGGGCTTGGTCACCGACTCCTCGACCCCGCGCAAGCGGGAATCTTCCTGCCTGGACGCTGACCTGTCGCGCGAGGAGATGCTCGACCCCGCGCAAGCGGGGATCTTCCGTCGCACGCCCGGTAGTAGTCCGCCGTGGTGTCCTCGACCCCGCGCAAGCGGGGATCTTCCGCACGGTGTGGACCAAGCGCGACTGGAGGCCAGCTCGACCCCGCGCAAGCGGGGATCTTCCGTACACCGCCGGTACCGCGCTGACGCGAGAGAACTCGTCCCCGCGCAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGACCCCGCGCAAGCGGGGATCTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 125417-125967 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOGI01000011.1 Actinokineospora terrae strain DSM 44260, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 125417 36 100.0 36 .................................... ATCCATCGTGCCGACCGTCAAGTCGACGAACTCGAG 125489 36 100.0 34 .................................... ACCACGGCCAGGACGCGGGCGAGGGTACGCAGGT 125559 36 100.0 38 .................................... AGACTGGGGTGACGGCACCAGCACCACCGGCACCGCGG 125633 36 100.0 39 .................................... CGAGGAGACCCTGGGCGCCTCGCTCAACTCGCCCATCAG 125708 36 100.0 38 .................................... CTAGGACCTCATCCCCCCGGAGTCGAGCTTGGGGGATG 125782 36 97.2 42 ......C............................. CGGCCAGACGCTCACCTTCGCCAAGATCAAGCTGCTGTACGT 125860 36 94.4 36 ......C....T........................ CCCCACCCCGCACCTCGCCCTCGGCCCCGGCGCCGA 125932 36 94.4 0 ......C............................C | ========== ====== ====== ====== ==================================== ========================================== ================== 8 36 98.2 38 GCAGCATCGGCCCTCACGGGTCGGTGAGGATCGCAA # Left flank : GTGGTTCCCGCACGACCAACTCGGCTCGACCCACGCCTTGCTCGACAGCGCCGGCACCATCACCGGTCACTACGGCTACACCGAGTACGGGTCACAAGCCACACGGGTGCTGCCGGCACGGCCCCGCACTACACGGGCGGCTCCACCGACGCCGAGACCGGCCTGCTCTACCGCCCCGCCGTTTCTACGACACAGCCACCGCGCAGTGCCTCACTCGACCCGATGATCAACTACACCCGCACCCCGGACACCTACGTGGGCGCAGACCTTCAACGACATCTAGATCGCCCCCGGTCTTGTTTGACTCCTGACCCGTGAGGACAGTTGGCTTGAACATGAGGTTCTCCCTAGGTGCCGGGGACTGCGGCAGCTTCGGAACCACTAGCGTGCGCCGACACGCCGGGAGGTTCCGAACTGTCGGATGGCGTGTCATCCCGCATAGCGCGACGACTGACTCATGGCAGGAACTCTTGATTGGTAAAATCCCTGCTCACGCAGGG # Right flank : CTAGGGTCCACGCGGCCGCCCTGAGTCGTCAGCCACATCACCGCCGCTGCTTCCAATCATGTTTGACCATGAAGCCCGCCGAGGCGCGGACCCAACAGGAAATGGTCACGCAATGAGCCCCTACTTGACAGGCTCTGTCCCGCCGAGTCGGTAATCGAAGTCTATCGGTCCGATTCCTACTCTGAGTGGGCCAAGGAGTAGGAGGACCGCAACGAAGATCGCCCCAAGGACGACCAAAGCTACGCAGATGCGGGCCAGTGAACTCCAACTGTGAGTCCAGCGGTGAACCACCGCTGCCCAGTTCGCTGGATCCGTCTGGTGGGTAGACGAAGGGTCGAGCGAGGTCTCGTCCATCGTGAAGTCTCCAGGTCGGCGGGATGTGTGGGACATGACGTCGTTGCGATGTCTGCAGGCTGCTGCGGTGATCCTGCGGAGTTGTCAGACCTCAACGCCAAAATGTGCGGTGTCGAGATCAGCCTGTCCTTCGGTCTTGCTGACAG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCATCGGCCCTCACGGGTCGGTGAGGATCGCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.00,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //