Array 1 165113-162154 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBP010000039.1 Salmonella enterica isolate 1156_08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 165112 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 165051 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 164990 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 164929 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 164868 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 164807 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 164746 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 164685 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 164624 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 164563 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 164502 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 164441 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 164380 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 164319 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 164258 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 164197 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 164136 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 164075 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 164014 29 100.0 32 ............................. GCAAAACGTCTGCAATGCCTTTTTTAACAAGA 163953 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 163892 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 163831 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 163770 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 163709 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 163648 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 163587 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 163526 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 163465 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 163404 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 163343 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 163282 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 163221 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 163160 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 163099 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 163038 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 162977 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 162915 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 162854 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 162793 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 162732 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 162671 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 162610 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 162549 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 162488 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 162427 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 162366 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 162305 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 162244 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 162183 29 93.1 0 A...........T................ | A [162156] ========== ====== ====== ====== ============================= ================================= ================== 49 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182447-181382 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBP010000039.1 Salmonella enterica isolate 1156_08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182446 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 182385 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 182324 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 182263 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 182202 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 182141 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 182080 29 100.0 32 ............................. TTAATTAATCATTTTGTTTAAATCCCGGATCA 182019 29 100.0 32 ............................. TGTTCGCGAACTGTTCACAAAATTGATTAAAT 181958 29 100.0 32 ............................. TACGGAAACATACGGCGCCCATTGCTTTTTCA 181897 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 181836 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 181775 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 181714 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 181653 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 181592 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 181531 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 181470 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 181409 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //