Array 1 197-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYHP01000058.1 Paenibacillus elgii strain AC13 contig00069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 196 30 100.0 35 .............................. ACGGCTCCTCCCCGGATGACCATTAACCTATAGGG 131 30 100.0 36 .............................. CGGTATCATCCTCCTTTTTGCTTGAGAGTCTTCCTA 65 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTTCAAATCCTCATAGGTACATTCAAAAC # Left flank : AATAAAGACGGTGTGCTTTAAATTATGGAACAAAGTTTAGATAGAACTTATACTTCTAGGGTATCTATAGAGATAGAACGAATTATCGTCTTTTCTTACATATATTTTCGGAAGGCACTCCTTTTGCACGATACAGCGTTATTCCATCACTCGTCCGCGAAAAGAATTCAGTGGACACATCTTGTACGGTTCTTGAGAAAAATAAAGTCTTTTCATTCATTTTAAGGTAGGGTGCCCCTGAAATTGTTCGATAAACTGGCATTAGATACTGGTACATTCTCTGTAAGCCAAAGAGAAAAATCCACAATAATTCCAAGTACAATCAGGGTTGTAATAGATATTATTATTTTTCTCATAAACCACTCCCCTCTAAAAAAATATGCAAATTGCCACAAACGGTATTGGTTTTCGTGAACTGGAAGTTTTGGAACTTAGACAGACGGATTTTAGTACGTTCAAAACCCGACCATAGTTTTTGCACAATGGCAGTTTGAAACAAA # Right flank : CGAAATGATGCAGGCGGAGGGCGAGCCAGGATTCGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTCATAGGTACATTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1801-2491 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYHP01000058.1 Paenibacillus elgii strain AC13 contig00069, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1801 30 100.0 36 .............................. GCAAGCGTCCGCTGCCAATCTCGAAGCTTTTCTGCG 1867 30 100.0 38 .............................. ATAATCGTGTTTGCGATGTCCGGGTCCAATTTCAAACC 1935 30 100.0 35 .............................. TCTGCATCGGATGAAGAACCGATACCAAAATTCCC 2000 30 100.0 35 .............................. TCCGTCTGGATGGAGAGAGGTTTACCAAGCAAGTA 2065 30 100.0 37 .............................. TAAATTCCCGATATGTGTACGCACTTTCGTTTCCGGC 2132 30 100.0 37 .............................. TGGTGCTTCATGTACGCACTAAGGAGGCTTTCCCCCC 2199 30 100.0 35 .............................. AATATAACCGTTCGAATCAAGGCGTACTCCTCCTC 2264 30 100.0 35 .............................. AAAAATGTGTTCGCAATACTTCTGAGCGCTGTTTG 2329 30 100.0 38 .............................. TCATGACTGCGGTGTTCTATGTTCTTGATTTACCGAGC 2397 30 100.0 36 .............................. GCGTAGCAAATACTTGGATAGAGGCCATCTTTCGAA 2463 29 90.0 0 .....................-...C...G | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.1 36 GTTTTGAACCTACCTATGAGGAATTGAAAC # Left flank : AATTTATACTTTATTAGATTGACATGCTTATTAGGTAAGTCCTACAATTTGAACAGAGGTGAGAAGCATTTGATTCGCTCAAAATTAAAGCCAATTCTTGACCAGAGAGGAATCTCCATTCGTCAGTTAGCAAAAGATATTGATTATCGTTTCGATAGCGTGCGGGCTTTTTACAATGACCAAACAGAACGTTATCCGCGAGAGCTTTTGGACAAGCTCTGTACATATTTAGGCGTTAATATAGGAGATTTGTTAGAGTACCAAGATGATGGAGTTCAGGACCCGCCAGTTGATTGATTGTTTACGATAAGGGTTAGAGATAAATATCTTCGAAATTTTAATGATTGGTCGAGCATATTGTCGTCGACCCCCAATCCCGCAAAAAAGCCGGGGGATCGACGACAACATAAACCGTGTAAAATAAGGAATCCTCTCGTTCCCAACGTTCACTTATGACTTTGGCGTTTATGAAAAATACCAGTTTAACGGCATTTTTGCGG # Right flank : GCTGATTTCCATCAAACTCCTTTTCAAACCCTCCCTCCCCCTGAACAACAAAAAACACCGCGGCTCAGGGCAAACCTGACTACCGCGGCTCTTCCAGCTACACTCCCGCTTTTTCCGCGGTCGATTTCATTCGCTGCGCGCTTTCATAAAGGATGCGCTCTTCGTCGAGCGTCAACACTTCCCGCTGCTTCATCACCAGTTTTCCGTCGATGATGACGTCCTCGACATCCCTGCTCGTCACCGATTCGACGATCATGTTGATCAAGCTGTGGGACGGCGAGATATGCGGCTGATCAATATCAATAAGAATAAGGTCCGCTTTCTTGCCGATCTCGACCGTCCCGATCTCGTGTCCTAGCAGCAGGGCTTTCGCGCTGCCGATCGTGGCCATCTTGATCAAGTCCTTAGCCGGGAGCACGACCGGGTCGAATACCGGAAGGCCCCAGGACATGTGGATGCCCGAGCGGAATACCCGCATTTCGTCGAAAAGGCTCAGATTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 466-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYHP01000064.1 Paenibacillus elgii strain AC13 contig00077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 465 30 100.0 35 .............................. ACGGTTTGAAGCGACACTATGATTACATCCCTAAG 400 30 100.0 37 .............................. ATTTTCCGGTCATGGTATCAAGAAATACCCAAATACC 333 30 100.0 36 .............................. TCTCCTGCCGTTGCCTCTAATCCACCCGGTACTGCT 267 30 100.0 38 .............................. GCCAGAAAATTAAGAGTTTCTTTATCAATGGACGGCGA 199 30 100.0 35 .............................. TCACTTTTACCTACTTTTTACCTTGGTTTTCATTC 134 30 100.0 37 .............................. TTCCATGTCTTCGTTGCATAGATCTCCAACTCTTTCA 67 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 100.0 36 GTTTTGAATGTACCTATGAGGATTTGAAAC # Left flank : AAAACATGCTGCCCTTGCAGCGAATATTGTTCTTGAGACCCATGTTAGCGCACGACTCTCCTAATTGAACATATCATGATTGAAATTATACTCGCAACTATAAATAGAAAAAATTCAGTCAACGTCAAGGTAAAAAACTGCTTATTATGGCTTACTCCATTAATGCTAAAAACTCCACGTAGTTTGTTTCGCTTCTAATTTAAGACATGATCGGGGTTTGCTAATTTGACACTCAACAAAGGATTGTGTTATTTATTCCCTTTAAAGTCCATTAAAGCTACAATATGCTATAGGTAATATATTTTTAAAAGCTTGGAAAAAAGAGGGCCAATCATTATAATTTAGCTATGTTCATTTTGTCGTCGACCCCCAATGCTGCAAAAAAGCCGGGGGATCGACGACAAGGATAGCCGCGTGGCGAAAAGGATTGTGGCGTTAGTCATTGGAAAAACGAAATAATTGGGATATGCAGGAATGGCGTAGTAGCAGGGTTTTTATGG # Right flank : CTGGCAATAACAAAGGAGCAAATTTTCGAGGCAGCGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAATGTACCTATGAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 10506-11234 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYHP01000064.1 Paenibacillus elgii strain AC13 contig00077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================= ================== 10506 30 100.0 36 .............................. TCGGTGGGTAAACGCTGCCGTCAAATGGATTCCACT 10572 30 100.0 36 .............................. TTTGCATTGTTTCTTCCTCCCCGCGTTTACGTCTGC 10638 30 100.0 36 .............................. AGTCAAAGTATGGAGGGGAACAGGGATGAGCCAGAT 10704 30 100.0 36 .............................. CCTGTCGCGCACAATTTCCCATAAATAAAGATCTTC 10770 30 100.0 36 .............................. CCTGACACCTCCGTAAAGTTTAAATAAATCTATAGC 10836 30 100.0 36 .............................. CCAGACCAATTTCTCGATTCTAATGTCCCACAACTT 10902 30 100.0 35 .............................. CTATTCCGGCGTTCACGTCGTCCATAACAGGGCAA 10967 30 100.0 39 .............................. TACGAGAAGCGGATCTTGGATATCGCCCGGTTGAAAATC 11036 30 100.0 35 .............................. GAAGATGAGTCCGGCGTAGCTGTTTTTCTTCATCT 11101 30 100.0 71 .............................. AACGGTTGTGTGTCAAAGGCGATACACATCTTAGCGGTTTAGAACACCTATGGAGGTATTCCGGATCTTGA 11202 30 83.3 0 ...AA....A..................GT | C,TA [11205,11223] ========== ====== ====== ====== ============================== ======================================================================= ================== 11 30 98.5 40 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : CATGGGCGAGAAAAGCTACGAGCCGTTCGAGGCTTTGTGGTAAGACCGGGCGTATAATAGCTGGTGCCGGAAAGAGGTGATGTTTCTGTTTGCGATCATTGTGTACGATGTCGGGGAGAAGCGTGTAGCCCGCGTGCTCAAGACATGCCGGAAATATTTAAACTGGGTCCAAAACTCCGTGCTGGAAGGGGAAATTACGGAGACAAACCTGAAGAAGCTGAAGGCAGAGTTGAATAAAATTATCGAAGACGATGAGGATTCGGTTATTTTCTATACTTGGCGTACCCAGAAGTATTCGGATCGGGAGATTATGGGGTTGGAAAAAGGTGGACAAAGCCTTATAATTTAACTATGTTTTTTGTCGTCGACCCCCAATGCTGCAAAAAAGCCCGGGGGTCGACGACAACGATAGCTGCGCGGTAGAAGGGATTGCGGCGTTAGCTGTTGGAGATACGAAATGTGGGATATGCAGGAATGGCGTAGTAGAGGGGTTTTTATGG # Right flank : TTGAGCTATCAATAAAAGCGCACATTCCTCCTAGAATGTACGCTTTAATGAAAACATGGTTTTAGAGTGATGAATAGTGCTATGTTCAATCTCTTCTCATTTGTTGTTCATCTATTGTCAAAATCATAAATCTCAGCAAGAATCAAATAAATGATTCCAGCGATTAGAGCGATTATACTGTAAGTGGTTAAATTTCCCCCAACATAATTTAACCATTGCTTGAAAGAATCTGCACCATAAACACTGTTAGGGGATGATGTTGAATAGATCGATGCAGTTAAGTATTTGACTCCTGTAAGAAAAGCAGAAATAGCTATAAGAATAACCCCAGCCGCTCTCCTGCTCATATTCATCACTTCCTTTCCTTATTACGTAATGATACATAATATTACCAAGACTCTTTCGTAACGCATGAATGACGCCAACTATCAAAATACGTTGTTTTGGGAAAGCCTGAATCCGGTAAATACCGTCGTCAATGCCGGTGTGGGTAAGTAAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 3 14209-14905 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYHP01000064.1 Paenibacillus elgii strain AC13 contig00077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 14209 30 96.7 38 .................G............ GACGATCGACGTTCATCTCCGTCGTCGAGCCCTCCGTA 14277 30 93.3 37 .....G...........G............ TCTGGATTTGCCGGAAAATGTGAAAGGATACTGCGAT 14344 30 90.0 35 .....G...........G...G........ GGCGGATTTTGGGCAAAATATGGCCTGATATAGTT 14409 30 93.3 36 .....G...........G............ TTTTCACCATGAAGTCAATGCCATCTTGGGTAAAAA 14475 30 90.0 37 .....G..........CG............ TTATAAAGTCTTGGCGCTATTCTATCAATAGAGGAGC 14542 30 100.0 34 .............................. CGACATGTGGAATGTTTGGAAGGGCTATGCCCCT 14606 30 100.0 39 .............................. TCGAAAAGAGGTTCATCTTTCGTCTCCTCTTCCTTTAAC 14675 30 100.0 36 .............................. CCGCAACCAGTGCGGCCGTCTTGACAGGCAAGCTGC 14741 30 96.7 36 .................G............ CTCTCAATCAACAGCCAACAATCTGATGAAGATTTA 14807 30 90.0 39 .....G..T........G............ ACGGTAGGCTGGGACACCCCCATGATCCGCGCGGCCTCC 14876 30 90.0 0 ....AG...........G............ | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 94.5 37 GTTTTAAACGTACCTATAAGGAATTGAAAC # Left flank : CTTTTGCAATCCCGCAGGCTTGGGTAATTTCCTCGACCGTTACGTTGTCGAAGCCTTTTTCTTTAAACAGCTTTATGGCATGTGTGAAAATAAGCTCTTTCAGTTCTTGCTTTCGGGATGCTCTAAGCATCGGGGAGGGTCACCGCCTTTTTTTAAAAAATGACTATGGTCATAAAATGACTTTGGTCATAATTTTACTCCTGTTCTTGGTATTGTTCAAGTATCAAAAAAGTTACGAAGTATTCAAAGCTTGTGGTAAGGTAGAAGTGCGAGGCATTTTTGCAATGATTGCACATTAAATTCAGGTGACTATGGGTTGGAAAAAGGTGGACAAACGCTTATAATTTAACTACGCTGCTTGTCGTCGACCCCCAATGATCAAAAAAACCGGGGGATCGACGACAAGGATAGTTGCGTGGCAAAAGGGATTACGGTGTTTGCTGGACTCGACACGTAATTCTTGAATATGTAGAAATGGCTTATTGGCGGGATTTTTATGG # Right flank : CCTCCGTGCGGGTAGCTGCCAGATGGGCTCGATTTCGTTCAAATTGGCATCCTGGAGGTCCCGCGAAATCCCTCTTGCGCAAAAGTAGTGTATTGCCGCCAAATTGGCGGCTTTTTTACTGCTAGAGTCCTGGCATATGCGGAAGCGAAACCGGGACATACGTACTAGGTCCGGTAGAATAGGTAGTTGTCTGTTCGTATTTTACAAAAAAAGGGGAACAAAAAGAAACTGCATGATATAATGACACTATTCATATCATCATTTGTTTCTCGAAGGATGACAAAGCTTTGCTGAAAGGAGGCGAAGGGGTGCAGATCTATTTCAGAGTCAAGACTGCCGGCAAAAGGCGTCCGGTGCTGGAGCTCATTGAGGCGTCGCTGCCTGACGATGTGCAGTGTCTGGGGGATGCGATTCGGGCAATTGTAACGGATCAAGTGCAGCGTTTTAACGCGCGCAGCATCGAGCAATCTATTTTTCCTTACTTAAGTCCCGGACAACTG # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:0, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAACGTACCTATAAGGAATTGAAAC # Alternate repeat : GTTTTAAACGTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 4 21132-21428 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYHP01000064.1 Paenibacillus elgii strain AC13 contig00077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 21132 30 100.0 35 .............................. TTCCGTGGGTCGTTGTTGTTATTTTCGGCATTATG 21197 30 100.0 36 .............................. AGCAAAGCCAAGGCGGAAATAGATAAGAGGTTAGAA 21263 30 100.0 39 .............................. TCCGGAAATGGTCGGCTGGGAAGCAATCGTTGTTTTCAT 21332 30 100.0 37 .............................. GCGTATCCTTGACTTTCCGCAGCACGACCGCGTTAGC 21399 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 100.0 39 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : GGAAATTATGTCCAAGCTGCTGCTGCTGGCAGAGGACAGCAAAATTAAAGATCCAAGCATCCTGGCGATGCTATAGCATACACAAAGAGCGCCCGACAAACGAAGGGCGCTCTTTGTGTATGCGAGAGAGTAATGATTAGAGAGCTCACTCAATTACATACAACTCGTTTTCCTTACCTTTTACACCGATTGTTCTAATTGTCAAGGATCAAAAAGCTGCGAATTATTTAGAGGTTTGTGGTAAGGTAGAAGTGCGAGGGTTTTTCCAACGATTGTATTATTGGAAACTGGTCTGTTGTTGTGATCATCTCGGCCTTGGAAAAAGGTGGACAAAGGCTTATAATTTAATTGTGCAATTTGTCGTCGACCCCCAATGCTGCAAAAATACCGGGGGATCGACGACAACGATGGTAGCGTGGTAGAAGGGATTACGATATTTGCTGTGGTCGACCTGAAATTCTTGGATATGTAGAAATGGCTTAACGGCGGGATTTTGATGG # Right flank : CCTGTTGAGGATACAGAGAAAAATACAATGCCGCCCATTACGACCAGGTTAAATTCGTCGTCAAAAAGGGCGGGCGGGACACGATCGATGCCGCTGCGGAGAAAGCCGGAATGAGCAGGAACGCTTACATCTTGAAAGCGATCAAAGAAAAGATGGAGCGAGACGGATTTGATGGGTATCTCGATTTCGCGGCGGAGGAGGAATAGCGAACGATGGCTAGAGGATGGTACGGATTATACCTCGGAGACAGAGTTGTTTATGAAGAAATAGAGGGAACCATCGTAAAACTGTTCGCGTTGGATAAAAATAAAGGGTTGCTGTTGGATGATACCGGCAACGAACATACAATCGTATGCGAATATTGCACAAAGATACCACCTAAAGATGGGCTACTTACATTCCGACCTCTTAGCGATATCCAATACACAGTCCTTTTGTACAATACCGACGATTTTCTTGATGTGTATTCCTTTACAGGTGATGAAATCGAAGATAAGGTA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 5 37079-37641 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYHP01000064.1 Paenibacillus elgii strain AC13 contig00077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 37079 30 96.7 37 ....C......................... CGGCCATTGAGAAGGAGGCGAGCTGATGCCGGCACCA 37146 30 100.0 36 .............................. TATCCTTCACGGTTACACATGATGGAGTCGGTATCA 37212 30 100.0 37 .............................. AGAATCGGCTGCAGCTTTCCGAATCGGAACTCCATTG 37279 30 96.7 37 ........T..................... ATCACAGACGTCGCCATGCCGATCCGGACCCCTGAAC 37346 30 100.0 37 .............................. GGACAAGGAAACAAACTGCTACGAGGAACGGAATGAT 37413 30 100.0 37 .............................. TCAGCTAGATCGGGTTGTGACATGCCTCTTTTTTCTC 37480 30 93.3 35 .........C......C............. CGACGAGGCCGGGAATATCGGCGTTGTCCTGGTCG 37545 30 96.7 37 .G............................ GCAATCTTCCAGTAGCCAAAGGCATTTTGTAATTGCG 37612 30 93.3 0 .................A...........T | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 97.4 37 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : GTAGCTGACGACGTATTGAATTTTATAAGTCAGACAGAAGTTGAAGGTTTTTGGCTTCATTTGGATGCTGACATACTGGATGCTGCGATCATGCCTTGTGTGGATTGCCCGGAGTCCGAAGGTCTACAGTGGGACGAATTAACCATCCTTTTGAACAGGATACTTTCTTCGCCTAAAGTGATCGGGATGGACGTGACTATTTTAGATCCTGATCTGGACGTTATGCATGAGGTAACGCGAACTTTTTCTGCATTATTAACAAAAGTGTTGAGAGTGGAAGCAATCCGACACGAGGAAGCGTGAGATCATAGGGGTTGGAAAAATGCGGGAGAAGTATTATGATTTAACTGTGCTGAAATTGTCGTCGACCCCCAATGCTGCAAAAAAGCCGGGGGATCGACGACAAACGAATGGCGTAGCGGCAGGATTTTGGCGATTTGGGTGACTTGAATGTGATTTTGTAAGGAAAGGAAACTGCAGGAATTACGGCATTTTGGTGG # Right flank : TACTTGAAGAAACGCCCTTCCAATAACACGCCTGCAGTGCATAATGATCAATGCAAACTGTGGTTAGGAGACGAAGACCCTAAAAAGAAAATACGGAGATCGTGCAGATTGGAAGCGAGTAGTGGAGAGAAGGTACGCTCAGTCTTATTTGGAAACGGGGAGCTATAAAGGGCATGTAACACTTCTTGAAATTTCCAAAGTTACAGAACCTTTACACGTTACCTATGACGATAAAAATATTTGTATTGCGGATGACGGTTATTTGTGGCTTCAACAATTCCCATCCGATAAACATCATTCGGTGACAACAATGTTTGACGCAAGAGGGAAAGTTGTTCAATGGTACATTGATATCTGTTACATGAACGGAGTTGGCGAAAACAACATCCCATGGATGGATGACTTGTATTTAGATATCATCATTTTACCGTCAGGAGAAATTGTCCAAAAGGATGCTGATGAACTGGAAGAAGCCTTGAGGAATGGCACTATTGATAAGC # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 6 46099-46995 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYHP01000064.1 Paenibacillus elgii strain AC13 contig00077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 46099 30 100.0 38 .............................. TCCTTCAAATAATTCCTGATCAACTCCTCCACTATCTT 46167 30 100.0 36 .............................. TACGCAGCAACTGTCATATATCCGCCGCTCGAACCC 46233 30 100.0 36 .............................. TATCCTTGCTCGAACCCGACCATGTTCGGATCAATT 46299 30 100.0 35 .............................. TCCGCATAGATGAATGGGGTAACCTTACCTTCGAT 46364 30 100.0 36 .............................. TTAAACTGGTGGATGGAAAACAACCAAATGAATTTC 46430 30 100.0 37 .............................. TTCCCTTCCTCATCCAGACGTGCGAAGGACAGTTGAA 46497 30 100.0 38 .............................. ATCCGAGATTTGGCCAAGGGTGACACGGAAAAAGCGAT 46565 30 96.7 38 .................A............ TACGAAAAAATGGCCCTTGATGACTAAAAAGGAATGAC 46633 30 96.7 35 .................A............ CCGCTTGTCCCCAGCCGCGATATGCGGTAGCCGCG 46698 30 96.7 36 .................A............ GCGCATCCTTCTGCGGAATGTACTCATCCGGCACGC 46764 30 96.7 38 .................A............ CATTGATGGTGTCACCAATCTCGAACTCGGTCCGCATG 46832 30 96.7 37 .................A............ AACAATCGTTCTAAAGAAACTTCCGTCCCCTTGTTGG 46899 30 96.7 37 .................A............ TGGATTCGGTCCGTGGTCTTGATGTCGGCAAAATAGT 46966 30 80.0 0 ....A.......T...C.GAA......... | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 97.2 37 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : GCTGGCCGCGATCCCGGTTCCCGACCCGAAGGTGGAATCGCGGAAGACGTTCACCGCTGTGGAGGAGTCCTCGAAGGCGGACCCGTACGGTTTGGAGCGCTCAAGCTTCGTTGAAGTGAAGAAGGGGCATTGGGTGGCGGTTGCTGAGGGGTAGGGTTAGGTGAGGGTTGAAGGAGTGGAAAGGGGAGTTGCAAATTACGGGTTAGTTCCGTTCTTTGTGTTCGGCCGCTAGAAGAGTTTGAAGGTAAGGACACTAAAGAGGTAGAATTAGCTTAAGCGATATAGGAACAAACCTAAGCAGAGTTGAATTTCTGTTGGAGAAAAACGGGTAAAGATTTATAATGGAACTACGAGTTTTTGTCGTCGACCTCCAATGCTGCAAAAAAGCCGGGGGATCGACGACAACGAAGGCCGTGCGGGAACAGGGATTTTGGTAGCCCGCGTGAGGGGAAATTGTTTGTTAGATATGTAGGAATAGCGTAACGACGGCGTTTTTGTGG # Right flank : CATCCTTCGGCGACTGCGGACGTCATAGTCGAAGTTGTTCCAGCTTGGCATATTTTCGGATTCCCAACATCTAGAGCTTCGAAAAAGAGGATCTGGGTTCGAAGGAAGAAAAGTCTTTACGGGTCGACACCTGTATCCGGAGCAACATTGTTGGTGTTAAACCTGCATCAACTTGAAGCGCTGCATATACCGTACACCGTCGTTGGAGAGGCTGCAACAAGAGCATCCTCTCCCTTGAAGGAGAAGATGCTCCTTGACACTGATGGTTTCATTATGACTGCAGTGGAAGCTGTTTTACGGTCTTTGCATATATCCGTATCATTCTTACATTCTGAATAGATTAAGTATGAAGGGCCCGGGCCATCGCATCCATATAGCTCTGAACGGCGCGCTGACTCACTTCCGCTTCTGGAACGAAATTTTCAAAAAGGTGAAAGCATCCGGGATACAGATGAAATTCGACATCTACACCTGCTTGTGCAAGCCGCGTTACATATTCG # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : GTTTTGAACGTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //