Array 1 12178-14159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUWI010000004.1 Winkia neuii strain UMB1295 NODE_4_length_193074_cov_13.647945, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12178 29 100.0 32 ............................. TGCGATTCGTAAATAGGAATCGGGCGCGGCAC 12239 29 100.0 32 ............................. AATGCAAACCTGGCCAATACCAACCCAAACCG 12300 29 96.6 32 ............................T TCACAAAAGGGGAATGATGTCGGAACAGTATT 12361 29 100.0 32 ............................. ACTGGAGATTACCCCCGGCGACTATGAGATTG 12422 29 100.0 32 ............................. TACTTTCAAATCTCAAGCCTATACATCACATG 12483 29 100.0 32 ............................. CATGCTGCCCCAATACCGACCACAGGCACCCA 12544 29 100.0 32 ............................. AAAAATAATATTATAAAAAAGAAGGGGTTGAA 12605 29 100.0 32 ............................. ATTTTATTATGGGATACGCGTATAACACTAAA 12666 29 100.0 32 ............................. TATCGCGCAGATTATTGCCGCCCTTTTAGGCT 12727 29 100.0 32 ............................. ACTCGAATACGAAGTCATTGATGAGGCCGCGT 12788 29 100.0 32 ............................. AGGCAAGAACAGGCAACCCAAATAGGTTCACT 12849 29 100.0 32 ............................. GAAACGCTACCCCATCGTTGACAGTCTCGGCC 12910 29 100.0 32 ............................. GAAACGCTACCCCATCGTTGACAGTCTCGGCC 12971 29 100.0 32 ............................. AATGTGAGGGTGGCACAATCCCCGCCCCCGTG 13032 29 100.0 32 ............................. CCCCTTCCGCCGATACGCAGAAGCACGCTATG 13093 29 100.0 32 ............................. GGGGTCGACATTCCCGGCCGCAAGGCGAGGCC 13154 29 100.0 32 ............................. TTCCGTGGCATAGATGGAGTGATGAATGCCTT 13215 29 96.6 32 ............................T ATCGCCGACTTGGACGAGGGTACTGCGTTGAG 13276 29 100.0 32 ............................. CGGGTGCAGGCGGGCGAAAAAATAGTTGTGGA 13337 29 96.6 32 ............................T GGTAAATGCCTTGGATGCTTAAAAAGTTTATG 13398 29 100.0 32 ............................. ACATGCTCATGTCACCGGCGCGAGCATACATA 13459 29 96.6 32 ............................T GTTGCTAATTCCAGGCCCTGTACAGGCAGGAA 13520 29 100.0 32 ............................. ACATGCTCATGTCACCGGCGCGAGCATACATA 13581 29 100.0 33 ............................. GCACATTCACGCACATTCGGCTTTCGGGCTTTT 13643 29 96.6 32 ............................T GTTTATTTCTATGCCGTTTTGCTCATACCAGT 13704 29 100.0 32 ............................. CTCCATGCCACGCTACCCGCAGCTAGGATTTG 13765 29 100.0 32 ............................. AACTACAACAACGGCACCCCGCCTTTGGCCCA 13826 29 100.0 32 ............................. ACAACAACACCAACAGCAACGACGCAACCGAG 13887 29 100.0 32 ............................. TATTAATTTGCTGCCCTGCCTCATTAGCGTTT 13948 29 100.0 32 ............................. GGTTATGAAATACCAAATATCGAGTTTCAATA 14009 29 100.0 32 ............................. TTCCGCCCAAACTTCTCTACCGTGCAAGTAAT 14070 29 100.0 32 ............................. GCTTCTTCGCGCCAATCACGCCGCGCCCCTTC 14131 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.5 32 CTTTTCCCCGCGCGAGCGGGGGTAATTCC # Left flank : GGTGAGGGCGCCTCCGGCAGCAAGGACGGTTCCACCGGTACTGACGAGGGCGACAACACTAGCGATCCCGGCGCGCAACCCGGCACCGAGCCTGGAACGCAGCCTGGGGCAAAGCCTGGAAGCCAACCCGGTGCAAAGCCTAGTTCGCAACCAGGTGCTCAGCCCAGCGGCGAAGGCAAAAACGCTGGGGGCAAAAACGGCGGCAAGTCTGATGCGGAACGGCAAGCGAGTGAGCCAAAAACAGTCGGCTCGTTCATAGCGACAACTGGAGCGACAGCTTTAGTACCCACTCTGCTAGGAGCCATGGCAATGATTAGCCTGGGCGCAGTTGCAAAACTAAGCCGCAAAAAGAACTGACCGAGGCTAGCGTCAGGGGCTGAGTTGGAGAACTCAGATGGTGCGTTACTAGGCATAGATACGCACCTTGCAGGCGGCAGACTGTAAGATAGCTACCAGCATGGAAGAATGATACAGACGCCCAAAAGCGCAGGTCATTTAGA # Right flank : CTGAGCTCAGAGCAGTCTCGCCAGCAGGTCCTTCTATTCCCCGTGAGAATGGAACAGGGAGAAATTCGATAAATGTTACTCGACCACTGTCGAGTGGCGTGTCACGTGCAGCTCAGATACGTGTAGGAATAATCGTTTAATATGTCATAGCCGTTTCTGTAGCTGTTGCATTTAGTTGCAGTAGCGGCCATTCTTATCTACACCTAACCCTATTGGTTTCAGGCTATTTAAGGACGCTCCCTGCCGTAAGTAGCATGCCCCGTGATTGATTAACGTAGGGGACGCGTCAGCAATCATTCCCGAGTCTTTTAGGCGTTAGAGCTGCAGTTTTTCCTTCACACTTGCGTACCATTGTTCTCGTGTGCCAACAGTGGTGAATTGCTGGCGTCTAGGTGCTAATTCCTGTCCGGGAACATAGTCCTTTATAGTGGCGAACCGTTCTTTAAAGTTGCTGTTCGTTACGAATAGTGGCAATTTCGCGAAATCTTTTGTGGGCCCTA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCGCGAGCGGGGGTAATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //