Array 1 57082-56422 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPTS010000001.1 Streptococcus sp. Marseille-P7376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 57081 29 100.0 47 ............................. CTTCATACTGAGGCCTTTTGGCCTGTTCTTCAACAGTTTTGCGGGAC 57005 29 100.0 37 ............................. TTCTTTCCTCACCCGGATTGATCGTTATTACATCATC 56939 29 100.0 40 ............................. CTTACCCCACAAGCCATTTGTTTCAGCGTCGAAACTGAAT 56870 29 100.0 46 ............................. AATTCATACTGAGGTCTTTTAGCTTGTGCCTCAGCAGTTTTTCTGC 56795 29 100.0 36 ............................. AAAATATAGTTATTATTACTTACGAACCAGGAGACT 56730 29 100.0 39 ............................. TCTTTTGGTTGCTCCTCGAGGCGATTGTTCGCGCAGAAA 56662 29 100.0 50 ............................. GAGGTCTTTGTGTAGACCTTCTATAGTGTCTTTACCGGCACAATTTGTGT 56583 29 100.0 38 ............................. AGACCCGGAATCATCCGCATCTTAATGATCGAGATGGT 56516 29 96.6 37 ..C.......................... TATTTGTCGTATACAACTTTATTTTCTTTGTGTACCG 56450 29 82.8 0 .................G.......GCTG | ========== ====== ====== ====== ============================= ================================================== ================== 10 29 97.9 41 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : TGTCGATCAACGCTTGAGATTGCAGTTCGGAGACGACTATCATATGGAAATCCAGTCTGAAGCAGATAAATTCACCCAGATTAGTCTTTATTTGCCGCTAGATTCAGATGATTAAGTTCGCTAATCTTCAATATTAAAGAGTCTGGGACAAAAGTCCTAGCCTCTCAATTGTCTTTGGATTGTCGAGCAAGACGCAGTGGTTGAGTGGGCCTACTACGCTGATTTCATCAGCTTTTACAGCCCTACTCAACTGTGCGGAGGTGGGACGACGAAATCGAATTCTAACGAATTACCGATTTCTGTCCCACTCTCGATTTTTCTGATTTTATCTTTCAAAAAGTCGGTCGATCTTTTCGATTTTTTGCCTCCTTTTCAAAAGCTGTCAACCAAGCGGTTTATAAGCGCTAGGACAAAAAAGATCGACCGACTTTTTTCATTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : TGTGTCTTTGTCTGTCTCTAAGGCACCAAAAAAGCGAGCAAATTCATGTCTGCTGGGAAGCATGAGAATTTGTTCGCCTTTTGTTTGGTAGGAATATTTGAAATTTCTGTCATGATTTGCTATACTAGTAGCAGTTAGAGATTGTAGCGGAGCTGTTGCCCCCTACATGGATAATCAAGAAAAGTACTCTTCAGTGCTTTTTTATTGTTATAGAAAATGGAGGGATTATGCTTTACATTTGGTCTTATTTGAAACGCTATCCCAAGTGGTTGGTACTGGATTTTGTGTCGGCCATCTTTTTTGTAGTGGTCAATCTAGGGCTGCCAACGGTTTTGGCGCGCATGATTGACGAAGGGATTAACCAGGGCGATCAGGAACGCCTGTATTTCTGGGGCTTTATCATGCTGCTGGTTATTATCCTTGGGATTTTGGGGCGGATCGTCCTTTCCTATGCCGCTGGGAAACTAACGACCAGCATGGTGCGGGATATGCGGAATGAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 68395-67784 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPTS010000001.1 Streptococcus sp. Marseille-P7376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 68394 29 100.0 47 ............................. TTTTACTGAGCCAGACAATGAATTACTGTCTGCATTATTCGTTATAT 68318 29 100.0 44 ............................. TCGACATTATCGACGATTTGATTAAGAGAGATTGGGCTATCATC 68245 29 100.0 37 ............................. CTTTAAGAATAGCCGCCTTAATTTTCCCTTGGTCAAA 68179 29 100.0 40 ............................. TCATGACCCCCTCCCGCTATTTGAGCTATGGAGATTAATC 68110 29 100.0 47 ............................. ACAACCTTGCTTGCGCCAGTCATTTACAGTTATCATAGTGCCAACCT 68034 29 100.0 52 ............................. ACCATTTCTGGTGGATTCACCCAAGCGACTTTTTCTTGGGTAAATGAATTTA 67953 29 100.0 41 ............................. GACATCTCGACATGCGCTCAGCCATTGCCCGATCCCAACTA 67883 29 100.0 42 ............................. CTGCTGTGGCTGATCCGGATTTGGTTGCGGCTGCTGTGGCTG 67812 29 86.2 0 .........................CTTG | ========== ====== ====== ====== ============================= ==================================================== ================== 9 29 98.5 44 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : AGAACCTCAGACAGATTCTGTACAGATTTATCAGTTGGAATCTCCAAAATACACCAAGAAGATTCAAATCGGCATGGTAGAATCCAACGACTTTATTCTTTAGGGATTAAAGTGGTATCATAGTCAGTCAATCAATCGAGTCTGGGACAAAAGTCCTAGCCTCTCAATTGTCTTTGGATTGTCGAGCAAGACGCAGTGGTTGAGTGGGCTCTACTACGCTGATTTCATCAGCTTTTACAGCCCTACTCAACTGTGCGGAGGTGGGACGACGAAATCGAATTCTAACGAATTACCGATTTCTGTCCCACTCTCGATTTTTCTGATTTTGTCTTTCAAAAAGTCGGTCGATCTTTTCGAATTTTTGTCTCTTTTTCAAAGGCTGTCAACCAAGCGGTTTAGGAGCGATGGGTACAAAAAGATCGACCGACTTTTTTCATTGAAATCTTGAAAAAAGCCCTGTTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : TGTGTCTTTGTCTGTCTCCGAGGGCACCAAAAAAGCGAGCAAATTCTTGTCTGCTGGGAAGCCTGAGAATTTGTTCGCCTTTTGTTTTGGCTCTTTGTCAACTGTAGTGGGTTAACGAAAAGTCATACTCTGGAGAGGACAACATTTGTTCTCTCCTTTTTGATATTCAAAGCGATGAGGATGCGTTTTTTGAAGTTGTCAAAGGTCCTGAAGCCGAAAGCGTTGCGCTTGATAACCTTGATGAGGTTGTTAGTAGCCTCCAGTTTTGCATTTGAGTAAGGGAGTTCAAGAGCGTTGATAATTTTATCTTTGTCCTTGAGAAAGGTTTTAAAAACAGTCTGAAAGATAGGATTTATACAAGAAATTGTTTCTTCAATGAGTCCAAAGAAATGCTCCGCTTGTTTCTCTTGAAAATGAAAAAGCAAGAGTTGGTAAAGCTCATAGTGTTCTCTGAGTTCTTGAGAGTAAGAGAGTAGCTTTTCCAGAATCTCTTTGTTGGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 73200-70616 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPTS010000001.1 Streptococcus sp. Marseille-P7376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================== ================== 73199 29 100.0 45 ............................. TTATGAATCCAAACAGTCACCTTTGGCTTTCATTTGGTGGTAATT 73125 29 100.0 41 ............................. ATATTAAAGCTTCTTCGTCTTTTTCGTTTATTCCTAGTATT 73055 29 100.0 43 ............................. TCTAGGCCATTCAAGATAGCATTGACACGGTCAGCTTTGCTAG 72983 29 100.0 42 ............................. ATACGAGCATAGTTCGTGAACCATCTTTACTTACTCCGTAGT 72912 29 100.0 38 ............................. TTTGTAAATTCTGGCGCATTTACCCAAGCTACTTTTTT 72845 29 100.0 46 ............................. ATGAATTCGATGATTGTTTTTGTTGCCTGCTTTCTTGATTTTGGTG 72770 29 100.0 56 ............................. ATAAGATTTACACTAGAAAGATCGGGTTCTGTAACCGGTGGAACTTCTGGTTCGCT 72685 29 100.0 49 ............................. AAGTAAGTCGTAAACACGATATCAAACTTCAGCTGAGTGAGATCGGTCA 72607 29 100.0 41 ............................. GTTTCAGCGTCAAATGAAAAAATCTTTGCCATTATTCTTCT 72537 29 100.0 39 ............................. GCTCTGCGTGAGCAGCCTTTTCAGCTTCAGACTTGTTAT 72469 29 100.0 49 ............................. TACCAGCATCCGCTAGAAATTCAACAGTCCATTGAATAGAAGGCCTATC 72391 29 100.0 55 ............................. CTTAAGAATATGTGTGAAACTTTTAAAATGCGCAATCTTTTTTTAACCTTATCGC 72307 29 100.0 39 ............................. AATTTATTTAAAACTTCTGTAATGGCACCTAAAATTTTA 72239 29 100.0 47 ............................. TTCTCCCCGGGATTGAGAGTGATTACATCGGTTGGAGAGACTTTTGT 72163 29 100.0 47 ............................. AAATAAGACTTCTGCGATCTAAATCATTGATTAGAAGTAAATAATTT 72087 29 100.0 47 ............................. ATATAAATGTCGGTATAAAACATCTTTGGTTTAACTCTGCAATTAAA 72011 29 100.0 48 ............................. TCTCGAGACTTTTCGCTTATAAAAGCGTAAGTCCCGTCGATGCTTGGG 71934 29 100.0 40 ............................. TTTTCAACTAGTTCATAATCGATCCACCTAGGTCTAGAGA 71865 29 100.0 45 ............................. TTTTTTTGGTGTCATTGGTATTTTTTCGCAAGTGGAGATGTTTTT 71791 29 100.0 42 ............................. AGAAGTTGCTCATCAGTGCCGAGGAAGCCCTTCATAGAAAAA 71720 29 100.0 35 ............................. GAACTTGACATTAAATCCTTGAGAAGCAAGCTCCG Deletion [71657] 71656 29 100.0 45 ............................. TAAGCAGAGGATGGTTTTTATCATCCTGAGACACTTCAGCATCCA 71582 29 100.0 53 ............................. TCTTTCGGCGAAGTAGACCCTTCACCTTCTCCTTTAGTATAAAGGTTGGCTAT 71500 29 100.0 47 ............................. TGGTTAGAAAGACGTCAACGCTATTGTAAGGGTGAGTAAACTTAAAT 71424 29 100.0 39 ............................. TTACGAACAGCAGAAGAAGTACCAGTACCATTAGCAAGA 71356 29 100.0 46 ............................. TCACGACGGAAGCTTCAGGACTATTTTTCCATTCCATCTTGCGGGA 71281 29 100.0 43 ............................. CTAGCCCACACCCGATGGAAGTGGCAACTAAAGGGAAAGGCTC 71209 29 100.0 37 ............................. TCTCTTGTACCAGTATCTGGCAATTTAGCTTTTGCTG 71143 29 100.0 45 ............................. GACCTGGCTTCTGACCAGGGTTTGGCTGATCTGGCTGTTGACCTG 71069 29 100.0 44 ............................. TCTTTTGAAGCTTCTACTATATCCTTGTATGAATTAGCAGTGAT 70996 29 93.1 45 ...........................GA TTGTGTAGCTTATAATAAACGGCAGCGGCTGTTTTTTTTTCCGTT 70922 29 100.0 38 ............................. CTCAATTTGTCGAGGACTAATAGTCTTAGCATCACCCG 70855 29 100.0 41 ............................. GCTTTGCCCTGATTAGCTGGGTCCTTTCTTGGATCTTTTGC 70785 29 100.0 47 ............................. CCTAAGGAATGCAACGTTTTGCCGTCGCAATGATTCATCTCTTATCA 70709 29 100.0 36 ............................. GTGATGTTGTAGTAAGTGCCGTTTTCGTACTCGTAG 70644 29 86.2 0 .........................GTTG | ========== ====== ====== ====== ============================= ======================================================== ================== 36 29 99.4 44 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : CATGCTTCAAATAATCGTCCTTATAGTTTGCATCTGGATTTTGCGGATTATATGAAGCCAGTTATCGTGGATCGAGTGATTTTGAGCTTGATCAATAAACATCAAATCAATGCTACAGACCATTTTGAAGAAAGGGAAGACGGATCGGTTTATCTGAATCGTGAAGGGAAATATATCGTCTTGCGAAGTTTTGAGGAAAAGCTACAGACTAGGCTGGTCATGGGGCGTTCAACCTATACCTATGCCCAGCTTATTCAGCACGATATTCGTCAGTTTAAGAGAATCTTGCAGAAGGATGGGGACTTAAAACGCTTTAAACCCTACAAATACTATTAAAAAGTCGGTCGATCTTTTCGATTTTTTGCCTCCTTTTCAAAAGCTGTCAACCAAGCGGTTTATGAGCGATGGGTACAAAAAGATCGACCGACTTTTTTCATTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATACTGTT # Right flank : CTTCAACTGAAAAAACTTGCGGAAGCAAGTTTTTTGTGGTATATTGAAAGTGCTTTCTTGGAGAGATATTTGAATCGGAGGTTGTTTATGTCTGAGAGTCAATCTGTATATAGTCACCATATCTTTGTTTTGCCCTTTGCGGCCAAGGGGCTGGAGTCTTTTCCGAAGTCTTCCAATTGGGAGGAACTCAGCCAAGATGTCAATGAACTTCCCTATCTGAATGTAGAAGCTGGTGAAAAAAGCGAGCGTTTAAAGTACGCTTATCGCCGATATTTAAATAAAGAAGCAGAGGAGCTGATTTTCCGCAATCCTGAGCTGGTCACAAACTATGCTTATACTGGCTTAGAAAAAGGTGATGTGTATCGGATTTCTTATTATAATCAAATCGACAAACTTGAGTGTTATGACCTAACGCTTGACTATATCATGCTTCGTTATTTTCCAAATTTAGAAGCAGGTTTCCTGATTTTTTCAATGGAAAATCGTTGCAAAGATAAATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 157402-156707 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPTS010000002.1 Streptococcus sp. Marseille-P7376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 157401 36 100.0 30 .................................... AGCGAATCTTGCGCTCTTTGAAGCAGATGG 157335 36 100.0 30 .................................... ATTTCTAATTCCCAAAATCTACATCTAGAA 157269 36 100.0 29 .................................... CAGATATCGATGTTCTGGATATTCTGTGG 157204 36 100.0 30 .................................... GAGACCTATGCCGGCGTGATAGCCGACTGT 157138 36 100.0 30 .................................... GCAAGTTTTCAATTAGAGCATTTAATAACG 157072 36 100.0 30 .................................... ATTGCCTTGTAGAACTCCGGCGTACAATCT 157006 36 100.0 30 .................................... AACCGCAAACTTTGAATCCGGTTCTGTGAC 156940 36 100.0 30 .................................... TGTTTGATGTAGTGGTGATATTAATAAATA 156874 36 100.0 30 .................................... CTTTAGGGACTTGTGGTTTGTTTGCCGGAA 156808 36 100.0 30 .................................... AAAGCGGTCTAAATCGCGTTTAGCTTGTCT 156742 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTATCTGACTTATCAATCTTTTGTAAAGTGTTGTGAGCACCTCCAAATGATGACAGAAAAATTTCCTAATATTTATGTAATCTCTTTTCCTTCAAATGAAGGCTACCTTTATATCAACAGAGAAAATATGGAATTTGTCAATATTATTTCTGGTTTTATAGAGCATTACTATGAATTTCGGTTTATGTATGAAAGTTTTGTACAGCGTTATCCCTCCAACGAGATTCCCAATGAAGAAGAATTTTTAATTTCCTTGCAAAAAATTTCTCCTTATTTATTTAGTTCTGATGTGGAACATATGAGCCTTTCGATTTATGATATGGTTACTTTAAAAATTATGAATAACTTATACCAATATGATAAAATTATTGATTTTAAAGTGCAGATGGCCAATCCATTGTTAATGAGCTTTTTAAAAAGTTAGACTTGACAAGCTTTTTGGGAGAATCTATAATCAGTATGTGAGTACAAAAAGCAAAATTTTTAAATTTGAG # Right flank : AGAAGAAAGCTAAACGGGCTTGGTACTGGTCTCATAAAATGGCTTTTTGTCTTGCTAACTTTATGACTGGGAACAAGCAATGTTGTAGATGGTTCTGGAAGAATTCGAAAGTGAAGATTAGAAGGAAAAGTAATCATGGAAAATGTAAACCAAATCTCCCAATGTCAGACTCTTTGGGCTAGAAATAAGTATCTAGTGCTCAGTCATTCCAGCAAGATCTATCTTGAAATCCGCCAATATCTGAAAAGAGACTTGGTGGAAGCAACACATGTACAAGACTTGATTGTTCAGGCGGTAGCCCTGCCTGAAAACCGCGGTCAGGTCTGCAACGCCTTTCAGCATGTTTGGGGCTATTTTAAGAGAAAAGCTAGCCCAGCTGAAAAAGAAGAATTTATGCTACTTTTAGAGCGATACCAAGCAGGTCAGGTGGAGCAGGAGGCTTTGGTAGAAGATGTAAAAGGTTTGCTTCGAAAGTACCCCAATTCTTACCTGCAGCAGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //