Array 1 251953-252164 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNH01000001.1 Prauserella shujinwangii strain CGMCC 4.7125 Ga0171606_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 251953 29 93.1 32 ......G.....................C GCCAACACGGAGGCTGCGTTCGTGCTCGACCA 252014 29 100.0 34 ............................. TGACCACTAGGGATTGGGATAGGGACAGGGAGTC 252077 29 100.0 32 ............................. GTGCCGGTGATCGCGGAGATGTGGAGCCGGAA 252138 27 89.7 0 ............--....C.......... | ========== ====== ====== ====== ============================= ================================== ================== 4 29 95.7 33 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : ACAGCGCCACCAGCACCGGCGAGGTGAACTCCAGCAGGATCGCGACACCCACCGGGATGCGGGAGGCGGAGACGAAGAAGAGCAGCTGCACCCCGGCCACGCCGAGCAGCCCGTATCCCAGCAGCAGCGGCCACTCCGTGCGCCGCACGCGCAGCAGCCGCGGCCGCGCGAGCCCCACCCCGGCCGCCAGCACCAGCGCGGAGAGGCCGATGCGCGCGGCCGCCACCTCCTCCGGTGACATCCCGGCGAGCATCGCGGGTTTGCCGATGACGCCCGAGCTGCCGAAGAACAGCGACGCGAGCACGATCAGCAGCAGCCCGCGGCCCTGCCGCACCGGGGGCGCCTGGGAAGCGGGGGAGACGTCGACGGCCACCCCGCGACTCTATGCGCGCGCACCGACGATCCGCGGCTGGTTTCTCACGGTTTGGGACGGGCGTACCAGCGCGAGCAAAGTGAAGGGGAATTGGGGTTGTCGGTTGTAGCGTTGCAGGTCAGGAAGT # Right flank : GCCCAGAAGCCGACATTGCACCTGAGCACCGGTGCATACCGTCGACGCCGGCGCTGCTCGTTCAGCCGTCGTTGTGGGCTTCGATAATCAGCCTGTGCGCCGGGTCGATCGTGCGTCCGTTGGGTTCGGCCACGCGGGTGAGGAAGTCGGCGGGGGGTTCGCCGAGCGCGAGGCGCTCGCGCGGAGTTCTCTGGCGGGTAGCTCACCGCCGTCCTGGTGGCCGCCTGACGACGGCGATGCCGAAGTTGTGGTTGACATGGGCGGCGCGGGCCAGCAGGACACGGTCGTGTTCGATCACGGTTCCGCTCCGGTGTATTCGAGGGCGCAGAACGAGAAGTCGTAGCGTGGTTCGGCGGCGCTTCGGCTGGAATGCCGCACGGCTTGGGTAGTGGGTCCCGCACAGCGCAAAGCCCATGATCTCGCTGCTGGGGTCGCGTCCGTGCGCCCGATCGCGCGAGTCGCGACTGTGGCCAGGCAACTCGGGCGCTACCGGGACGTGG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 253721-253932 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNH01000001.1 Prauserella shujinwangii strain CGMCC 4.7125 Ga0171606_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 253721 29 100.0 32 ............................. ACCAGCAGGATCGGCGCGAGCCCGATGAGCGC 253782 29 100.0 32 ............................. TACTGGAGAACGAGTGAGCAACTTCCAGATGT 253843 29 93.1 32 .........................C..T GCGACAGGTACCGCCGAGCCCGCGTGGTGTGC 253904 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : TTCATGCGCCGCTACGTCTACGACATCACCCCTGGCGACCAGTCCAAGTGGATCAGGCTCCGCGACACCGGCGACGAGACCACGCTGACCGTCAAGCAGATCACCAGCGACGCCATCGACGGCACCCACGAGATCGAAGTGGGTGTCGATGATTTCGCCGCCACCAACGCACTGCTCGGCGTGATGGGCTTCAGCGCGAAGTCCTACCAGGAGACCAAGCGCACCAGCTTCATCCTCGATGGCGCACAAGTCGAGATCGACACCTGGCCCCGGATTCCCCCGTACCTGGAGATTGAAGCCGGATCCAGAGATGAGGTGATCAGGGTCGCCGGGTTGCTCGGCTACACCGAAGCCGACCTGACCGGCGAGTACACCATCAAGATCTACGCCCGCTACGGTATCGACCTCAACGCCGTTCCTATGTTGCGTTTCTGATCGTCAAGGTGTGGAAAGTGAATGAAATCCGGCGTACCCGGTAGTATCTCCGCAGTTCAGGAAGT # Right flank : GTACATCATCGGCGGTGTCGTGCAACTCGGCTGCGGCTGGATCGAGCTGTCGCCGACTGCGCCTCCTGCCTGCTCGACTACACGCCGCCTGCGGACCAGCACGTCACCGAGCCCGGCGATGGCTGCGCCACACCAGCCTCCGACGCCGTGTGACGGCTGATCGACGTTGAGCGCGGCCGTCGGGCAATCGGATTGTCAGGCGGTCTTGAGCAACCCCATCCGGGAAGCCAGGCCGCGCGCTTCCCGAACGACCGATTCGCGCCGCGCCCGTTCGAGCATGGTGGCGACGATCTCGCGGGCGAATGCGTTGCTGCGGGTGCGGACCGGGCCGAGCCGTTCGGCTTGTGTGAGCAGGTCGAGCACCTGTTCGTCGGGCCTGCGCAGCCCGTAGAGGGCACGGGCGTGCTCGATCAGGTACGTGGTGCGTCGCGAGTCGATCGCGAGTTCGGCCGGGTCGATCGTCTCGGCCAGGCTCGCGGCGAGCGCGTGGTCGCCGCATT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 256539-257848 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNH01000001.1 Prauserella shujinwangii strain CGMCC 4.7125 Ga0171606_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 256539 29 96.6 32 ............................C TGGGTCGAGTACTCGTTGATCGTGTCGAGCAG 256600 29 100.0 32 ............................. GAATTCGGGATCACCACCGAGAAGCTGAAGAA 256661 29 96.6 32 ............................T GCGGTACCGAACTCGGTGACCCGGCCCGCTGC 256722 29 100.0 32 ............................. GCGGAAACATGGCTACTAACCTCGATACCTAC 256783 29 100.0 32 ............................. CAGGTCGGCTGGCACCCAGGGCACCGACTCCG 256844 29 96.6 32 ............................T GGCACGCACGCATCGAGATGGACAAACTACAG 256905 29 96.6 32 ............................T TCGGTTGGACAATCGACGGCGTTTCGTTCTAC 256966 29 100.0 32 ............................. TTGACCTCGATCTCGCCGGTAACCTCGCGCTT 257027 29 100.0 32 ............................. GCAACTCTCGACAGGCGAGCCAGAAGCCCCGC 257088 29 96.6 32 ............................C CGGCGCGTGAGCTGCGGCCAGCTGCGGTCCCG 257149 29 100.0 32 ............................. CACCTTGAACGCCGCGCCGATCCAGGTAAACA 257210 29 100.0 32 ............................. CTCGAAGACCCCGGACACTGAAAGAGGAAGCC 257271 29 96.6 32 ............................C AGGACATGTCACTCACCGATGAAAACGGCGCT 257332 29 96.6 32 .C........................... CGCTGCTTGGCCACCACTGCATTGGGCATGTG 257393 29 100.0 32 ............................. AGCTAGAAACGCTGGCGGGCTTCTAAGAAGGG 257454 29 96.6 32 ............................A ACTCGCGAGTGCCCACCCCGGCGTCGCGCAGC 257515 29 100.0 32 ............................. GGCGACGGCCAGAGCTTCGTGTTCTCCCGCCT 257576 29 96.6 32 ......T...................... ACGGGCGCCTACCTGATATTCCTGCCCCAGGC 257637 29 96.6 32 ........A.................... GCCGCCATGTCGATGGCGGGTGTGGCGGCGTG 257698 29 100.0 32 ............................. GTCGTCCCGGACTCCTCGCTGGCCACGATCAC 257759 29 100.0 31 ............................. GTCCGCTCGACTCCGTTGGAGCAGCTGCGGC 257819 29 86.2 0 ........T...............C..GC | G [257842] ========== ====== ====== ====== ============================= ================================ ================== 22 29 97.8 32 GTGCTCCCCGCGCATGCGGGGATGATCCG # Left flank : CGACGAGTCGCAGGAGATCGCCGCCGACGTCATCCGATTGGCACTGCGGAACGGGGCTTCGGTCCCCGTGCTCCGCGTAAGGTCTGCTCGCGCGGCTCAGGATCGCGTGGCGGATTTCGCGACCGACGACCGGGTGAACAGACTGTGCCGCAGTCTTTAGCTTCGCCGCCGAGCCGACCGAATGCCTGCCTGCTGTCGGGGCCGGTGTGGTCGTCCGTCGACCTCGACGAGCGTGGCCCGATGTGCGGCCGCAGCGACGGAGCGGGAACCGGCGGTATTGGCCAGCGTGGCGCGGAGGCTGCGGAGCTGTGACGCGAGGAGAACTCTGAACGCCTGGCCTATGTGAGGTGGGACGGTACTGCGTGGAAGTCGTGGAAACGCTTCCACGCGAGGTTGGCTTTCGGTCCCAGGTAGTTACTGACGGGTAGGTGGTTGCGTGGTCGGCGAGCAAAGTGAATGAGATCTGGCATACCCGCTAGTATCTCCGCAGGTCAAGAAGT # Right flank : CACCAGGTGCCGCGGGACCTGGCGCTCCCACGTGCGCAGGACCGGGAGAACGGGACCACGAGATCGCGGCCATATGTAACGAAACAGTAACGCAGAGCTGTCTCATGGGCCGCCGAGGTAACGGTAGGTCCGGATCGCTCGACTTGTTCGGCGATGACTCTGAGCGATGCGGCTCGGTCGGTGTGGGCCAAGTCGCCGGACGACGAGGGTGGCTGGCTTCCGCTCTGGCAGCACATGGAGGACTCGGCCGCGGTTGCCGGTGCCTTGTTCGACGACTGGCTCGCGCCGAACGTGGTCCGGCTTTTCGCCGAACCCTTCGGCGGGGAGCGCGATGTCGCGCGGCGGGTGCTGACCTTCCTGGCCGGCGTTCACGACCTCGGCAAGGCGACACCGGCCTTCGCCGTGCAGCACATCAGCCTCGCCCAGCGCATGCGCGAGCACGGTCTCTACATGCCCGCCAATAAGGCGGCGCTCCCGGACCGGTGGTTGGCTCACCACTC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 266991-267872 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNH01000001.1 Prauserella shujinwangii strain CGMCC 4.7125 Ga0171606_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 266991 29 96.6 32 ............................T CTGGGGAAGGTCAAGCCACGATTCGGTGGTGC 267052 29 100.0 32 ............................. TGGTCATCGCAGCCGCCCCGCACATCATCGCC 267113 29 100.0 32 ............................. TCGACCTCCATTCCGTCCCCGGCGGCCTCGGC 267174 29 96.6 32 ............................C GGAAGCGCACCATCTGGCAGGAGCGCGAGCAT 267235 29 100.0 32 ............................. TAGCCGCTGCCTTGAACGAACCAGCGATCTCC 267296 29 100.0 32 ............................. GTCGACGTGACCGTGGCCGGAGACGAAGGAGA 267357 29 100.0 32 ............................. GCGCAGGATGGCGCTGCCGGATTGTCCGACTT 267418 29 96.6 32 ............................C TCTAGGCGTGACGAACTCCTCGGCGAGTTGAC 267479 29 100.0 32 ............................. CGCGTCACCTGATGGTGCTCCCTTCCGGTCGT 267540 29 100.0 32 ............................. ACCGTGCGAGGCAACGACGGACGGACACCACC 267601 29 100.0 32 ............................. CAAAGTAACAGCAAATGATTCCCGCGTACGCT 267662 29 96.6 32 ............................C GGGTCGATCGGCGCGAGTGGCACCTCGGTGGG 267723 29 100.0 32 ............................. CGTTGGCGGCCGCGGTGCACGCCGACGTCGGT 267784 29 100.0 31 ............................. AACGCGATGGCTGCGGCCACACCTGTTTCAG 267844 29 79.3 0 ........G.T.........TG..GG... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.7 32 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : CGTGCTGTGACGATCGTGGTGCTCACGGCGGTGCCGCCAGGACTGCGCGGGCACCTCACCCGGTGGTTGCTGGAGATCAGCCCCGGAGTTTTCGTCGGTTACCTGTCGGCGCGGGTTCGTGAGCTGATGTGGGACCGGGTGATCGAGTTCGTCGACGACGGCCGGGCGCTGCTGGTGTACTCGGTGCAGGGCGAGCAGCGGCTGGCCTTCGAGGTGCACGGGCACGACTGGACGCCCGTGGACTTCGACGGCATCACCCTGATGCGTCGGCAGACCGTGCCCGACTACGTTCCGGCGAACCGGCCGCCCCGCAAGCGCGAACCTTCCGAACGCCCTGCCTACGAGGGCGCCGCGATGCGCGACGAGACCGTGTGGAAGCGTCGCGAGGCGAGGCGCAAGTTCCGCCGCAAGTAGTTACCCGCTGGTAGGCAGTCGTGTGTGCGGCGAGCAAAGTGAAGGAAATCTGGCATACCCGCTAGTATCTTCGCAGGTCAAAAAGT # Right flank : GATCGTGCGTAGTGGCGGAGGACGCTGGGTGCGGCGGCGATGACCGGTCCGGCCGCGCTGGGTGTACGTCGAACGTCGCAGGTTGCGGGGTGCGCCGTTTCCCGCGGAGTTTCGGCGGGTACCGGACATCGTGCCGACGGCGGGATCAGCAGCCTCAAGTTCGGCGCCGACGGCGTCACCATGCGGGCCATGCCGGACGGCTTGCGAGTGTATCCCGCGTGTTGGGCCGTCGCCGTCGACGCGTCCCAAGTCGTACCGGTGATCGCCACACCCCGCTCCGGCCGCGGACCGGGCGAGTTCGATTCTGCGGGATGCCGCGCTGACCGCGCGCCGTCCCCGCGCCCTGGCCGAGGCGCAACGCACCTTCAGGTCGGCGCCCGAGTGGGTCGCCGCCCGGCAGAAGGTTGACAAGCCCCGACCGACGTACAAATATTTCTTGTCGTGAAGGAAGTCTTGTACCTCGATCGGTTCGAGCAGGCTGCGGCACTGCTCAAACCGCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 271720-272967 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNH01000001.1 Prauserella shujinwangii strain CGMCC 4.7125 Ga0171606_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 271720 29 96.6 32 ............................C GAAAACTGAACGTAAACGGGCGGAATCATGCG 271781 29 100.0 32 ............................. GAGGAGACACGTCACCTGTCCGGCGAGAGGCC 271842 29 100.0 31 ............................. CTTTTTGTTCTGTCCCAAGTTTTTCAGGACG 271902 29 96.6 32 ............................T GACGCGAGACCTCGTCGTAGCGCTGGCGTAGC 271963 29 100.0 32 ............................. TAGATCCGCTGGGAATCATCGGACAGGTCATC 272024 29 100.0 32 ............................. CGCATCCCCGTACACCCGCTCGGCGTCGGACA 272085 29 100.0 32 ............................. GGTCGGCCGCACTGGTGGTGGGCGGCCGACAC 272146 29 96.6 32 ............................C CCGAATGCGGCGAACCCTAGTTCGTCCGCTCG 272207 29 96.6 32 ............................C TGCATCGATCAGCCTGCTACCGGGGGAGTACC 272268 29 96.6 32 ............................C GAGTACAGCGATGTGCAACCCGTCGTGACTGA 272329 29 100.0 32 ............................. TTGATCACAACGGTTTGGTGACCCCTCTTGCG 272390 29 100.0 32 ............................. GTGCGCCAGCTCCGCGACGCGGGGATCGTCGT 272451 29 100.0 32 ............................. CGGCGCATCAGCTCATCCACCGCGGCCTTGAC 272512 29 100.0 32 ............................. CCATCCAGGCGCAGGGCTCGAAGACCTTCCGG 272573 29 100.0 32 ............................. CTGGCGCGGGACGGCTCCACGCCGGTGCAGCT 272634 29 96.6 32 ......T...................... CACTGGCGCTGCAGGCGGATCTCCGCCGACAA 272695 29 93.1 32 .............G..............C GCCCAGCCGGACCTCGACGCGGTGGTCGCCGC 272756 29 100.0 32 ............................. GCCACCGGGGAGATGCGCGCATTCCCGGTGCG 272817 29 100.0 32 ............................. GAATACGCCGACGACCTCCGCCGCCGCCGCGA 272878 29 100.0 32 ............................. CGCACGCGGCAGGGCGACCCTTCCGAACCCCC 272939 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.5 32 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : TCACCGTCGCCCGGGAAGCCTTCACCAGTGGGGTGCACGTGGTTGTCGTGGTCGGGGCCGCGATCTTCGCGGGGGTGGCTGCTCTCATCGCGAGGAACCTCAGGAACGTGCCTCCTTTCGACCGGCCCCAACCGGCTGGCCGGGACGAGGTACCGGGCGAGGACGAACCGGTGCCCGATATCGCCTGATCTCGTCGGCTTGGTGCCGTGCCAGGAGACACCAGATCCGGACGCTGATTGAGCACGACCTGAATCGTGCTGACCTGCGCGGTGATGCTGGGCGCCGGTAGGCGGCTCTGCCTCGAGGACGTCAGGCCGGGCGCGCTACGGCTGGCCCTGTCTACGGGGCGCCGCGAGGCGCGACGAGACTGTGTGGAAGCGCCGCGAGGCGAGGCGCAGGTTCCGCCGCAAGTAGTTACTCGCCGGTATGCGGTCGTATGGGCGGCGGGCAAAGTGAAGGAAATCTGGCATACCGGGTAGTATCTTCGCAGGTCAAGAAGT # Right flank : GGGTTCCAAAGGCGCGTCTCGGTCAACAGGGCGTGACGCGCACGCGGGAGAACTCGAAGACGCACTCGTCGGGGGTTTCGGACTACCCCTTGCAGTCTCGTTCTCGCGGACACAGCAGGTAGCGTCCGGGGATGGACACTGCGGCCTCCAGGCCACCCGTCCTCCTGATCGGGCTTGATCCGTATCGGGCGCCCGGCCCCTGGGACCCTGAGCCGGTCGTTGAAGCGATCGATGCGGGGCTCCAGCGATTCGCTGAGCGCAACGTTGGTGTTGAGACCTGCCTGATCGGCCTCGATGGCAGCAACGACGTGGAAACGGTCGTCGGCAACGCGCTACGCGCCCGACCGTGGGAATGTGTCATCGTTTGTGGCGGCCTGCGAACGGCCGACGATCAGGTCGAGCTGTTTGAGCGACTGATCAATCTGGTGCGACGACACGCTCCCGACGCGGCCATCGCGTTCAACACCACCCCGTCGAACACCTTCGATGCCGCTGCTCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 274698-275214 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNH01000001.1 Prauserella shujinwangii strain CGMCC 4.7125 Ga0171606_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 274698 29 96.6 32 ............................A CGTCGGGTCGACGACGTGCGCACTCGGGCTCA 274759 29 96.6 32 ............................T ACGCGTCACATCCGATTTGTTCACTACCGAAT 274820 29 100.0 32 ............................. GTTCAGAAGCAGCTCACAAAGGCTATCAAGGC 274881 29 96.6 32 ............................C ACTCCCCTCGTCAGCCCGACCACGTCGGGCGA 274942 29 100.0 32 ............................. GACTGGTAGCCGTGCCGGGTGTTGCGCGGCTG 275003 29 100.0 32 ............................. GCCTTGGTGCTGTGACGTCGTGACGCTGTAGC 275064 29 100.0 33 ............................. GACCGGCTGTGGACAGGTGAACCTGCGGCCGGT 275126 29 86.2 31 ..............T......G...G..T TCCGAAACGACGCCGACCCAGCCACTCGGCA 275186 28 75.9 0 .A....GT.....-.C......A.C.... | A [275206] ========== ====== ====== ====== ============================= ================================= ================== 9 29 94.7 32 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : GCGTGCCGAGCGGGTGCTCCCGCCCGGCGTCGTTCATGCCCCACAGGCCCGCCGCGCCGGTCTCCCGTTCCGCGAAGCCGTCGGCGGTCCGCGACACCACGCCGCCGAGGTCGTCCAGCCAGCCCAGGGCGAGCGATCTGTCGTAGAAGAGGCGGTAGACGTCCCGGTCGCTGTCCGGATCCTGCCACGGGTGCGGAACGAAGTCGCCGTACAGCGCGGCGAACATCGTGCCCACGGGTTCGCGGCTATCCGGCGCCACGCCGGGTTCGGCGCGGGCGGACACGTACCGTTCGGGCAGCCCTCGCTGCCGGTCTGAATCCACCACGCCGCGACCTTAGGATCACGGTGGCCTCCGCGCACGCGATATCCGGGCAACGGGGTTAGCCTTTGTCCCAGAGGGCTGTTCCGCAGGACGTTACTCCCAGTAGGTAGGGATGTCTCGGGCTCGTAAAGTGAATGAAATCTGGCTCGTCCCGTAACATCGGCCCAGGTCAGGAAGT # Right flank : GCCCGATCGACGCTCCCGGAAATCAAGTCCCTACGGCCAAGCACCATCAGCTCCCCGGCGCGCCTTCCCGCGGCCCGAACGCGGTCAGGAAGCGGTCCCGGAAGGCGTCCATCCGCCACACCGGCGCGCGGGGGCCGGGCCGCAGGCCCTCGTCCCAGTTCCAGCCGGAGATGCGCTCCAGGACCGCCCGGTCGCGGGCGACGATGGTGATCGGCACGTCGTGGCCCGCGTCGGGGCCGGTGACGGTCGGGGCGGGCTGGTGGTCGCCGACGAACACGAGCACCAGATCGTCGTCCCCGTGCGTCTCGACGTAGGAGATCAGGGTGTTCAGCGAGTACTCGACGGCACGCCGGTAGTCGGCGCGCCGCTCGGCCCGGTCGCGGTCCGCGCCGGACCCCGGCCCCGCCGCGCCGGAGGGCATCCGGTGGAACACCGACCCGTCGCCCACCTGGTCCCAGCCGATCAGCCGCGGCGTCGCCGTCCACGGACCGTGGCTGGAC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 284618-285073 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNH01000001.1 Prauserella shujinwangii strain CGMCC 4.7125 Ga0171606_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 284618 29 100.0 32 ............................. GTGGGTGGCGCCCTGCCTTCAGAGACGGCGCT 284679 29 96.6 32 ............................C GAGTGGTACCTGGATGGGGTTCTGCACACCAT 284740 29 96.6 32 ............................A CCGTCGACAGCGGAGAGACCAGAGAGCCGGCG 284801 29 96.6 32 ............................C ACCTACAAGTCCAGGAAGCGTTAGCCCTTCTT 284862 29 100.0 32 ............................. CCGACTGGCAGGCCCGCGTCATGGACACCGCC 284923 29 100.0 32 ............................. AGGCGTTCGAGGTCGCGGGAGGCTCGGCGTCG 284984 29 96.6 32 ............................C GACCACAGTAGTTGACGAAACGCGGCCGACGC 285045 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : CGCGAGGGCAGCGGGGTGCTCGTGTACCTCAGGGGGCACGAGGGCCGGGGGATCGGGCTGGTCGCGAAGGTGCGCACGCACGTCCTGCAGGACGAGGAGGGTCTGGACACCCTCGACTCCGCGACCACCCTCGGCCTGCCCGTCGACATCCGCGACTACTCCCCGGCGGCCGCGGTGCTCCGGTACCTCGGCGTGCGCTCGGTGCGGCTGATGTCCAACAACCCCGACAAGATCGCGGCGCTGGAGTCCGGCGGGCTGCCGGTGGTGGCCCGGGTGCCGCTGCTCGTCCCGGCCAACGACCACAACATCGGCTACCTGACCGCGAAACGTGACCGGCTGGGCCACGACCTGCCGCAGGTCGGCCTGTTCCCGCAGCACTGCACCCGGGCGGCGGAGTGAGCGGGTCCCTCCGTTTGCGGTACTGGGGAAGGGGGTGCTGGGGCGCTCGGAAAGTGAAGGAGAATCCGGGTTGGTCGCGGTAACGTTGCAGGTCAAGAAGT # Right flank : GGGGAGCGCGACGGTGTCGACGGCCGGGAGCTGGTGCTCCCCGTGTATGCGGGCGGTTCGTGGCGGCGCGGTGGCGTACGCGACAACGAGGATGTCGCCCCGTTCTCTACGCGGGACTTCGGTCAGTGCGAAGACAAGAGCGGTCACACCGGCAACGCTGGTTTGCAGTCCCGGTCAGGTCCAAGCAGAGCCCGCGAGGTGGGCTGTTGTGTGATAACGGAACGAGCGCGGACGGCGGTCGGGATGTTGATGAGCAGGCACCTACGCCGGTCGAGGTGGTAGGTGAGCGAGCCGCCGAGCAACAATCCGAGGACGCTTCCAGCTCTGGTGAGCGCGCCGTAGACACCCAAGGCCGCTCCTCGTTCGCGTGGCGTTGTGAAGGTCGCGATTGCGACGGGGTCAAGAAGTGCGGCGGAGACTCCTCGCGCGGCACGGCCAGCAGCGCGCAATCGGGCCTGGCCGACCAGGCTTCAGACGAACGCACGGTGCGCACCGAACGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //