Array 1 30096-30734 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAGWHJ020000062.1 Salmonella bongori strain 2013K-0909 NODE_8_length_225155_cov_63.2462_ID_2102_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30096 29 100.0 32 ............................. CGCGTTTCATAGGCTCACAAAATACGCGCAAA 30157 29 100.0 32 ............................. CCACAGCAGATAGCTCAGCCATTGCAGCCAGT 30218 29 100.0 32 ............................. GGCGGCATCGCTGTAATAGGGTCGCTGATCGC 30279 29 100.0 32 ............................. CTAACGGTTCATATGAATGCAGGCGTTTATCA 30340 29 100.0 32 ............................. ACAAATTTATTTATCGATTCCATGAATTTAGC 30401 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTAGGTTACAC 30462 29 100.0 32 ............................. TTCATTCACAGGGTTAGTGATTGTTATTCACT 30523 29 100.0 32 ............................. TGCCGATGAGCGCTCCATTAGTTAGAAACTAT 30584 29 100.0 32 ............................. TTCGCTCGCTTGCAAATATTTATCAGTCCCAA 30645 29 100.0 32 ............................. ACTACGAATACTCAGACGTCGTAGACTCCTAT 30706 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCACTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCCATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGACTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTATCTATCATCTTGCGTTCGCTATTTCTCCAAAAAATTCGAGGAATGTATAAAGTAGCTGAATAATTTTCCATAGCGAGACATGGATCACACTATTTTGGTGAGTTTAAAGAAAAAATCGTTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATCTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : GTTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTAAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACCTCGATATTATTCGATACCGGACCTGACGACAGTTTTATACAAAATGCATCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCACATGGACATTATGATCACTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATAACGCTTCCTGGTATGACCCGCAAAATAAAAAAATTATCGCGAGAAGGGGACTATTCACGTTACCGAATGGTGTACGCGCGCGACCCTATGCCAATTAGCGACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 39331-40093 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAGWHJ020000062.1 Salmonella bongori strain 2013K-0909 NODE_8_length_225155_cov_63.2462_ID_2102_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39331 29 96.6 32 .............C............... TAAAACCAGGAATTTTCACCTTGTTCCTCTGT 39392 29 96.6 32 .............C............... CAGGCCTGCCTCGATATCACTGGAGCGATCTA 39453 29 93.1 33 .....T.......C............... GTCATACAGCTTATTCGATCGCGTCACGCCTGC 39515 29 100.0 32 ............................. TTAGCGACCCGGATGTGCTGGCGCTGCTGGAT 39576 29 100.0 32 ............................. TTAGCGACCCGGATGTGCTGGCGCTGCTGGAT 39637 29 100.0 32 ............................. TCCACAGGCGCGGTGCTACCGCCCATCAGTAC 39698 29 100.0 32 ............................. CGCTTGTGAGCTTGTTCTTTGGTAAACCCTGC 39759 29 96.6 32 ............................A CCGCATCAACCGCCACACCTGGCAAAAACGAC 39820 29 93.1 32 .............C..............A CACCCTTTCCGTTTAGATACGCCTCGGAAATC 39881 29 96.6 32 .............C............... GGGTTTTAGGTCGGGATGAGCCATAAATCGCT 39942 29 93.1 32 ............TC............... CGGAACTGGTTAACGAGGGCGAACACGCGCAA 40003 29 93.1 32 .............C.....A......... TGGTTGGCCTTCAGTATGCCATCAAGATAAAA 40064 29 79.3 0 ............TC.......C.TT..T. | T [40089] ========== ====== ====== ====== ============================= ================================= ================== 13 29 95.2 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : TGCCAGCCATTATTTTCCGCGGATGGCGGAAAAAATGCCGATCGAGATGTACTGGCAACAGGCGCTCATTAAAGCGCGGAAGGCCATTACGCTTTTTCCCACTGCGGCGAATGTATCTGCCTTTACGGGTATAGAAACGCTTTTTCCTTTTATTCAGCATCCCACGCCGCTACAACAAAAAGCGCTAACGCTGGATATTCACGTGGATGGTGCCCAGCTCTTTATTCTGGAAGATGTCACCGGGGCCGGAAAAACAGAGGCGGCGCTTATCCTGGCCCATCGGCTGATGGCGGCAGGTAAAGCGCAAGGGCTCTATTTTGGGCTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGCATGGCAAATAGCTGGCTGGCGCTGTATCAGCCGGATTCTCGTCCCAGCCTGGTGCTGGCACATAGCGCACGTCATTTAATGGATCGTTTTAACCAGTCTATATGGTCGGCCAGTCTTTTCGGTACGGAAGAGCCTGATG # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATGCTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGCTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCGGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACGTTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTCTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //