Array 1 19-778 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYME01000194.1 Salmonella enterica strain BCW_4989 NODE_194_length_817_cov_1.84133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 ............................. AGCACTTCACCGGATCGCTGGTTGTGCCGGTG 80 29 100.0 32 ............................. GAAAAGAAGAAATAATGAGATTTGCCCCGGAA 141 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 202 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 263 29 100.0 32 ............................. AATATCTATAACGGAGCCGTTTTCATTGAGCG 324 29 100.0 32 ............................. TGGATATTCATTGAGCGCTGGAAATTCAAAAA 385 29 100.0 32 ............................. ACAACAACATATTGGTAAATCAGGATACTGGC 446 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 507 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 568 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 629 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 690 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 751 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAATTATATCCGTTTAGTG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 162455-161937 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYME01000006.1 Salmonella enterica strain BCW_4989 NODE_6_length_224837_cov_11.5449, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162454 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 162393 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 162332 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 162271 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 162210 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 162149 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 162088 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 162027 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 161966 29 93.1 0 ............TC............... | A [161939] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179971-178723 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYME01000006.1 Salmonella enterica strain BCW_4989 NODE_6_length_224837_cov_11.5449, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179970 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 179909 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 179848 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 179787 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 179726 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 179665 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 179604 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 179543 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 179482 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 179421 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 179360 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 179299 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 179238 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 179177 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 179116 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 179055 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 178994 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 178933 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 178872 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 178811 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 178750 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14-1110 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYME01000166.1 Salmonella enterica strain BCW_4989 NODE_166_length_1148_cov_2.0555, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 14 29 100.0 32 ............................. CGTTATAAGGCGGTAACAGCGAAAACGTATGA 75 29 100.0 32 ............................. GCTCCCGACTCCTGAATGAAGGTGTCGATTAT 136 29 100.0 32 ............................. TCGCCTTTTCCAGTCGCCTGCACGCTATATCA 197 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 258 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 319 29 100.0 32 ............................. GTTCAATTCGGTTTCCACTTCCCGCTACATCG 380 29 100.0 32 ............................. ATTATCTCTCACTTGCTTCAATAAGCCCCCGC 441 29 100.0 32 ............................. GCGTTGTTGTTATTCGCCAGACCAAGATTCCA 502 29 100.0 63 ............................. TTGGCGTGCGGCGAGGTCATCAGATAAACCGTCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 594 29 100.0 32 ............................. CCACGGCGCAGGAAATCTCCTTTGTAACAGGG 655 29 96.6 32 .G........................... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 716 29 96.6 32 .............C............... TACCTGCCGCTACCGCGCTGGACTGCGCCGCC 777 29 96.6 32 .............C............... TGTAATCTCTCTATTTATAATCTGTATTGTAC 838 29 96.6 32 .............C............... CAACTGGTGATACGGTTATGTCTCGTATCGCA 899 29 96.6 32 .............C............... GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC 960 29 96.6 32 .............C............... AGTAATCAACTCAATGCGCTCACAACGCAATG 1021 29 96.6 32 .............C............... CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 1082 29 93.1 0 ............TC............... | ========== ====== ====== ====== ============================= =============================================================== ================== 18 29 98.3 34 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : TTCCACTCGCCGCG # Right flank : TCCACGTCGCCCGCCATCAGGTTCGCCAGCTCGTGTTC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //