Array 1 121856-122003 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMMT01000006.1 Escherichia coli strain MOD1-EC6561 MOD1-EC6561_6_length_151151_cov_25.6649, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 121856 28 100.0 32 ............................ TCGACGGGGTGCGGTAAAACCTTTGCGAACGC 121916 28 100.0 32 ............................ TTCACAGGTAACATACTCCACCCGCCCACCAT 121976 28 78.6 0 ................A...A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTGAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : GCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCACTCACTGCGTTCGTGGTCTGTCCAACTGGCTGCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCACCCCCCCTGGAGTGCATTATGCGAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGTCGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACGTGTTATGGATTTATACTTCCAAAGTACTTCATACATATCACAAAATAA # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 110-809 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMMT01000147.1 Escherichia coli strain MOD1-EC6561 MOD1-EC6561_147_length_931_cov_15.0164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110 29 100.0 32 ............................. GCTAATTTACGTAATTTACGTGCTATTGCACT 171 29 100.0 32 ............................. CCTCTGGTTTAAAAAAGCCGCCGTCAGCGAGC 232 29 100.0 32 ............................. ACGCAGAATCACGACGCGGTAGAGCGTTACGT 293 29 100.0 32 ............................. GAAGTAGGCCTGACAGTGATTGAACGCATACT 354 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 415 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 476 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 537 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 598 29 100.0 32 ............................. TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 659 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 720 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 781 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 62492-61120 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMMT01000017.1 Escherichia coli strain MOD1-EC6561 MOD1-EC6561_17_length_71251_cov_27.4096, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 62491 29 96.6 32 ............................A ATACCCAGCGCAATTTCGAGCGCGAGAGAGTT 62430 29 100.0 32 ............................. CCCCAGCGCGCTAAGAACTTCGTAAATATTGA 62369 29 100.0 32 ............................. CCGGCGAAGTCTTTCCCTCTGTCATCGTGTTG 62308 29 100.0 32 ............................. CTTTTCCGAGCTCACGAGTTACCGGCTATCGC 62247 29 100.0 32 ............................. TTGACCCATGCGCTAAGGTCAAAATGACCCAA 62186 29 100.0 32 ............................. CACTGTTATTCAGAGGGGTAAATAAAAAATAT 62125 29 100.0 32 ............................. ATTTGCTCGCGATGCGCCTGCAGCTGGAACCC 62064 29 100.0 32 ............................. GGGCTAAAAGACGCGTCGCCGCCAGGCGGCTT 62003 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 61941 29 100.0 32 ............................. CCTTGATCGGATTCCAGAAACGAACCACTAAA 61880 29 100.0 32 ............................. CCGCACCCCGCGCGGTTGGTCTGGATGACAGT 61819 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 61758 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 61697 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 61636 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 61575 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 61514 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 61453 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 61392 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 61331 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 61270 29 96.6 32 ...................A......... TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 61209 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 61148 28 72.4 0 .AA........C..T....T-.G.....C | C [61123] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTACTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //