Array 1 3840-1674 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWXM01000077.1 Pseudomonas aeruginosa strain R4656 GCID_CRPK_0001_NODE_77.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3839 29 100.0 32 ............................. GTTGAGTTTATGAGGCTCATGACTCGCTGCAG 3778 29 100.0 32 ............................. CCACTGCGCAGGCACGCCACCGAGACTGCTGA 3717 29 100.0 32 ............................. TTTCGTCGTGCGACTCATACACTGGCGCCTCC 3656 29 100.0 33 ............................. GTAGGTGGTCAGCGCCTGCGTGGTCGTCTGGTT 3594 29 100.0 32 ............................. ACTTGCCTTGATGACCTCGCGCTTTTCCTGCT 3533 29 100.0 32 ............................. TCGTAGTCTACGATGAAGCGCGGGTCGGTTTC 3472 29 100.0 32 ............................. TTGAACAGCAAGGACGCTGTACTCAAGCCCGC 3411 29 100.0 32 ............................. TTGATGGTGCGGTAGGCTGCTTTGCCCTCCTC 3350 29 100.0 32 ............................. CACGTTTCGGTCGGCTATCGCGTCCTGCGCGC 3289 29 100.0 32 ............................. TGTTGGAACCCGCTAGCGCGGGCGAGCAGGCG 3228 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 3167 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 3106 29 100.0 32 ............................. GCGTTTCCACGCAGGCAGATGCTCGCCACCAC 3045 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 2984 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 2923 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 2862 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 2801 29 96.6 32 .................T........... CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 2740 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 2679 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 2618 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 2557 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 2496 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 2434 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 2373 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 2312 29 100.0 32 ............................. GTGTAGCGGAACCGGGCGGCGCCGCCGGCGAG 2251 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 2190 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 2129 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 2068 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 2007 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 1946 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 1885 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 1824 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 1763 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 1702 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.2 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14018-13012 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWXM01000077.1 Pseudomonas aeruginosa strain R4656 GCID_CRPK_0001_NODE_77.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14017 29 100.0 32 ............................. CTGCGCAGCACCTCGGCCGCCGGCTTGGTGAC 13956 29 100.0 32 ............................. AACACGCTGGCCGGTGAGTTCTCCGGGCCTGA 13895 29 100.0 32 ............................. CGTGCAGTCGGTAAGAATCATCGCGCTGCCGC 13834 29 100.0 33 ............................. CTTCTATCCGAAACCCAGGTCACGCCAGACAAC 13772 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 13711 29 100.0 32 ............................. TCGTAGCCCTCCGGGAGGGATTCGAACTTGTA 13650 29 100.0 32 ............................. CCTCCGACGTGGAGGTTGAGGCGGATGGCTAC 13589 29 100.0 32 ............................. TGGAACTTCAGGTCCTTGTTGGTCAGGCGCTT 13528 29 100.0 32 ............................. CTCCCGTGAGCACTCAGGGCATCCAGTCGGCT 13467 29 100.0 32 ............................. AAAGCCATCGGGGCACGCATCGTTGCGCCAGC 13406 29 100.0 32 ............................. GCGATCTGAGCACCTGCGGATGCGTAGATGTA 13345 29 100.0 32 ............................. TAGGTGTGCTGGGCGTAGTCGGTGGAGTTCTG 13284 29 100.0 32 ............................. GCCGTGTCGTTCGATGGTGATGTCGTGCTGCT 13223 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 13162 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 13101 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 13040 28 79.3 0 A..........A..C.....-..A....T | C [13031] ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTTGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGCCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //