Array 1 367129-368500 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHLO010000002.1 Aerococcus sanguinicola isolate As-29b-U14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 367129 29 100.0 31 ............................. CAGCGTGTTTTCTGGGTACTTGATAGGGGTT 367190 29 100.0 32 ............................. GACAACACGGGGAGCTACCTCCGCCAGGGGGA 367251 29 100.0 32 ............................. CTTTTCGTTTCCGATGTTTATCTTTAAGGCAC 367312 29 100.0 32 ............................. ACTTACTACTATTGTTACTAACTGGAAGCATA 367373 29 100.0 32 ............................. TCGCTTAACTAAGTTCGTTTGATTATCAGTAA 367434 29 96.6 32 ............................C ACAAAGTCTTCATCAGCAAATAGATCATACCC 367495 29 96.6 32 ............................C TAGACCGGGCGACTTCAAACATGCTTTACATG 367556 29 96.6 32 ............................C TTCAGGGAAGCTTGTCATCTCATTTAATGACT 367617 29 100.0 32 ............................. CGATTTGTGGATGTGATTAATGATTTGCTGGT 367678 29 100.0 32 ............................. CATCGAGCCAGAGAGGATGTCCTTTTTTCTAT 367739 29 89.7 32 ..........................TAG ATCCATAAGCTCCCTCATTTCTTTGGACAGAT 367800 29 100.0 32 ............................. ACTGGGGCAGTCATTAAACAGGGCGACACCAC 367861 29 93.1 32 ...T........................C TACGGCCTCAATATCAACTGGGGCGGGTCCTG 367922 29 96.6 32 ............................A AGTTCCTGATGACTTGAATGAATATGTGTTAG 367983 29 96.6 32 ..............C.............. CTAATTGAAATGTGATAAAGCTCCCGACCAGT 368044 29 96.6 32 ............C................ CCCGAACATCTGCGAAGCGGTCGCCTCGTAGA 368105 29 93.1 32 ............C...............C GCCCTCCAGTCGTGGTGGATAAGTACGCCAAT 368166 29 93.1 32 ............C...............C GGAGAATTAGGCCTGATGCACCTAAAGAAGTT 368227 29 93.1 32 ............C...............C AACTACTTTGGCATGAAGGCTAGCCCCAGTTG 368288 29 96.6 32 ............C................ GACGGCCACTATAGCTATGATATTGCGATTTT 368349 29 93.1 32 ............C...............C TCGTCCTCCTTAATTGCTCGATTGGCAACTAC 368410 29 96.6 32 ............C................ ATATAAGCATAAAGTTCATAAAACGTGAACTT 368471 29 100.0 0 ............................. | G [368488] ========== ====== ====== ====== ============================= ================================ ================== 23 29 96.9 32 CTTCTTCCCGCATATGCGGGGGTGATCCT # Left flank : GATCCTAAAAAAGATCAAATGATCGAAATAGGCGCTTTAAAGATAGATGGGTCAGAAGAGAACATCTTTCATTCTCTGATCGCTAATAAGAAAATCCCTGAGCAAATTCAAAAACTAACAGGGATTAGCCAGAAAGACATAGATGAAGACGGTAAAGATGAATCGCAAGTACTTGCAAAGCTTCTCGAATTTATCGAAGGTCAGGTTATTGTCGGTTACAATATCAATTTTGATATTAGTTTTATTAATGAGCAATTGAAAAAGATGGGACAGGAGAATTTATCTAATCCAATTCTTGATTTAAAGACTATTGTCAAAAAGGAGAAGATGTTTCTAAAAAATTTTCAATTGCAAACAGTTTTAGCGAGTTACGGGATCAATAAAAAAGTCCCCCACCGAGCCTTGGAGGATGTTAGATTAATGGCTGAGCTCATTTCTAAAGTGAATAAATTTCCAGTTTACTTAAAAAAGAAAGCCCGGTAATACAGGGATCCTTTAGT # Right flank : TATTAGCGTTTACCCTCTAAATATTGCAAATTGTAATATATAATTAAGAAAAGAAGTGAATAAAGGGAGGTATAAATATGTTTCCTGAGATTTTGAAGAGCTACAGAAAATCAAGAGGCTTGACTCAGAAAGAATTGGCGAATAGGCTACACGTTTCTCAACCTACTATCGGGAGTTGGGAAGTTGGCAGGACGGAGCCTAACCAAGAAATGCAGAAGAAAATAGCCGATTTTTTCGGCATTTCTGTAAATACCCTATTGGGAGTAGATGATAACGATTCGGTTGACTTGAAAGTGTTACTTAAAAATTCAAGCATGACATACGGCGGAAAAGAAATAAGCGATCACGACTTAAAAGTCTTGGAAGGCATAGTGGAATCGCTGCTTGGCGGTGATGAAGGTGGGGATAGATAGCTTAATTTCAGATTTAATCGCTAAATATAATACAAACGATCCTTTTGAGATAGCAGAAAATGAAGGAATACTCTTCTCCTTCTTCCC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATATGCGGGGGTGATCCT # Alternate repeat : CTTCTTCCCGCACATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 154846-155973 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHLO010000003.1 Aerococcus sanguinicola isolate As-29b-U14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 154846 28 100.0 33 ............................ CGCACGGAGAACGTCAAATAAAGAGGGGCTTAT 154907 28 100.0 33 ............................ TCACAGTGGAATGCCGTGTAAGGAACGCCACAG 154968 28 100.0 33 ............................ TCCGGTCATCAAGGACATCGAACCCGTAGACAA 155029 28 100.0 33 ............................ TGTGGCAAGTGGATATTACAGGGGTGACAAAGG 155090 28 100.0 33 ............................ TGGCTACGGCAATTTCAAAGATGGCCCGTAACG 155151 28 100.0 33 ............................ CACACGTTATAATGTATATAGAAAGTTAAAGAA 155212 28 100.0 33 ............................ CGCTCAAAAAGTTAGCCGAAGCACTGGACGCAG 155273 28 100.0 33 ............................ TAAATGTTGTAAGCGGAAAGGAAAACCTTGCTA 155334 28 100.0 33 ............................ TGATGTCTTCGCTATCGTCAAAGATTTCTGATT 155395 28 100.0 33 ............................ TGTAGGAGATAATCCATCTTTGGAATAGACTCT 155456 28 100.0 33 ............................ CCGTTTGGCCCCACTGGTCGACATGATGTTCGC 155517 28 100.0 33 ............................ CTGTTTGTATCATCTTCGGTCACCCATTTAATC 155578 28 100.0 33 ............................ CCGATTACGAAAATGAACGAAGGAGTTAAGGAG 155639 28 100.0 33 ............................ CATACCCTTGAACCTTATTTGGTTCTAAATCCT 155700 28 100.0 33 ............................ CCAACTTATTTTTTGAACGTTCTACCACATCTA 155761 28 96.4 35 ...........................T TGCTGAGTAGATAGTTAAAGGTAATCTGAACAGAA 155824 28 100.0 33 ............................ CTGTTATGCGCGGTATACAAAGAAGGATACTAC 155885 28 100.0 33 ............................ TATGCTAGCCGCCTACCCAGCCTTATTTTATTT 155946 28 75.0 0 .................A.A...TCCTT | ========== ====== ====== ====== ============================ =================================== ================== 19 28 98.5 33 CTTCTTCCCGCACACGCGGGGGTGATCC # Left flank : TTATCCAACAAATCATTCGCTTTGGCTTGATCGGAGTCCTTGCCACAGTGATTGACTTCGCTCTATTAACGGCCCTCACCGAATGGGGCTATGTTCACTACCTATTATCAGCGGGAATTGCTTTTGTTGTCGCTACGATTTTTAATTATCTTGCTAGCATGCGCTATGTTTTCGTGAGTCGTTTCTCTAAAGAAGAGCGGCTTCAGGAATTACTCCTGTTTGTTAGCCTGTCAGTGGTAGGTTTGATTCTCAACCAGTTCTTTATGTGGGCCTTCGTCGAGAAACTTGGCATCTATTATCTCCTAGCCAAAGTCCTAGCTACCTTCCTTGTGATGGCGTGGAACTTTATCTCAAGAAAATTATGGATTGAATAAGGCATGAGGTTATCACTGGTTAAAGTGACCGAGATGGCTTATAGTAGCTATAGGGGATTTTTTTAAAGTGAATGAAAATGGCCGAGGGATCAAAAAAGAAGCCTGATTTGATGGGATTTCTTTAGT # Right flank : TTACTCAGTTAGAAAATCAAGGACATAATTATTACTAACTCTTTTCCGCCTAGACGGATACTTTTACTTCAGCCCAGATGAAAGCAATATTCCTTTTTTGATAATATTTCCCGATATCCCGAGGGCTATCACTCAGGGGAAGGATATAGTCGACGCGCTTTATATGGCCAGTGATTGTCTGGGGATCCATTTGGCAGATGCTTTAGAGCGTGGGCAAGCTTTGCCTGAGCCAAGTTCGATGTCTTCCTTGTCTTTAGATGATTTCCTTCCAGATGATGATGATTTCCATTTTGAGCGCAACCAATCCTTTATTTCTATGGTTTTAGTCGATCTCGATGATTATACCAGCAATTAAATCAGCTTTTCTAATCAGAAGCGAAGAGCTTTTATTTTAAAGCGTCCAAACTTTTGATACAATAAGATTAAAATAAGTAAGTGAAGGATGATATTATGGCCGGAAAAGTACGTGCAGCTTTGACCCATGCTCAAAATACCCAACT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //