Array 1 63310-66886 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZOS01000003.1 Castellaniella defragrans strain CCUG 39790 contig_0000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================ ================== 63310 28 100.0 32 ............................ CATCATTCCTCCCACGGCCCAGGAAAATCCCG 63370 28 100.0 32 ............................ GAGACGCACTTACGAAAAATCCGACGCTTCGT 63430 28 100.0 32 ............................ AGTCCCGACGACGAATACGCATCGCGCGGTAG 63490 28 100.0 32 ............................ CAGTCCTGCACCCCGCCCGCCACCCCATAACC 63550 28 100.0 33 ............................ CCGACACATCAGTGCATGAGCCCATGCTGGGCC 63611 28 100.0 32 ............................ TATTTGGATGTAGCCATGGACGAGCCCGGACA 63671 28 100.0 32 ............................ TTTTTCGCTATTCGGCAGTCGGGTAAGGCGGC 63731 28 100.0 32 ............................ TTTAGGGCGGGGGGGACGTCAAGATGCGATCC 63791 28 100.0 32 ............................ CGACTCATGCCCCACCTGCGCCAGGAACGCGG 63851 28 100.0 32 ............................ TATGCGATGTGGATCAGCGCCGCGTTTCATCT 63911 28 100.0 32 ............................ TTGCCCCTCGCGGCGCTTGAGCACAGCCAAGG 63971 28 100.0 32 ............................ ATGAAGCCATCGAACGGGTCAACGTTGGCTTC 64031 28 100.0 32 ............................ TGACTGCGCGGGGCGCTGCCGTGGCCGAGGCG 64091 28 100.0 33 ............................ CTGGACGCCGCCGAGGACGCCGCGATCCAGTAC 64152 28 100.0 32 ............................ AACCCCAGTCCGCCGGAATGCCGACCTGGATA 64212 28 100.0 32 ............................ GTCTATTTGTGGACGAATCGATCCGGACAGCC 64272 28 100.0 32 ............................ ATCGGTCACCCCAATATTTATGCGGGCTTCGA 64332 28 100.0 32 ............................ TCATCGGACAGCAGGTAGTTGCGCCAATACCA 64392 28 100.0 32 ............................ TGGCATAGTCGCTCCCAACAAAAGCCCCGCGT 64452 28 100.0 32 ............................ ATGCGGGGCAGGAGCCCCAGCTTCGCGTTTTT 64512 28 100.0 32 ............................ TGTGTGTCGGCCAATGCGCGTGCCGCAGCCAC 64572 28 100.0 32 ............................ AGTACGCGGCAGAGCGTGATGCGCTGCGGGAG 64632 28 100.0 32 ............................ CGCTGGACACGCTGGAAGCCAGCGACCGTTGG 64692 28 100.0 32 ............................ TCGTCGAACCAGGTCAGCGCGATCACGCCGCC 64752 28 100.0 32 ............................ TTCGTGAGTTCGGCGTTACGCAGACGCAGGGA 64812 28 100.0 32 ............................ AAGCCCCGCCAGATGATCCTCGTGCCAATGCG 64872 28 100.0 32 ............................ GTTTGTCGATGGCCTCCAGGTTGCGCTGATGC 64932 28 96.4 32 ................A........... TCGACGTCGGCAAGCTGGTAGCTGGTGCCCAG 64992 28 100.0 32 ............................ CCTGTCACGCCCTCGAAACCGGCCGGGCCGGT 65052 28 100.0 32 ............................ CTCCCCGTTGCTGTCACGCTGCTGGATGGCAG 65112 28 100.0 32 ............................ CTCCCCGTTGCTGTCACGCTGCTGGATGGCAG 65172 28 100.0 32 ............................ TTCGACGCGTCGGCGTCCAGCAGTGCATCGTC 65232 28 100.0 32 ............................ GCGACGATCTCCGTTTTTCGCCCAGGGTCCAG 65292 28 100.0 32 ............................ ACGCGAGGCCACCTTCATCGATCACGCGATAC 65352 28 100.0 32 ............................ AGATGCGCGACGCTGGAATAACGCGCTGACGG 65412 28 100.0 32 ............................ GCGAAGATCGCGCTGCCGTAGCCCAGGATCGA 65472 28 100.0 32 ............................ ACTTCGCCCGCCCGGCGTTCAGGCGCGTTTGT 65532 28 100.0 33 ............................ TGTCGGCTACGCCTTTCACGAAGGGACTGGGAA 65593 28 100.0 32 ............................ TGGTGGGCCAGGTCGCACAATGCGGCCAAGGC 65653 28 100.0 32 ............................ TCAATTCGATGCTGGCGATGCTGGGCACCAAC 65713 28 100.0 32 ............................ CGCCAATGTCTGACATCATCGGCCGCCTGCCG 65773 28 100.0 32 ............................ TTCGCAGAATTGATGATGACCTGGCCGACATC 65833 28 100.0 32 ............................ TGCCGCCGTTTAAGATTCGCGCCCACTCCATC 65893 28 100.0 32 ............................ TGATCCGCCAGGCCTGCCCGCTGCCCTGGTCC 65953 28 100.0 32 ............................ AAGCCCGGCCAGCGCCCAGGCAGGCAAAAGGT 66013 28 100.0 32 ............................ TCGACAATGAAAACAAAATAAGCATGAACAGA 66073 28 100.0 32 ............................ AATTGGCCGCCGTTAACAATGCGCTGCGCTAT 66133 28 100.0 32 ............................ GCTAAGTCTTGGGCGTGGCGCAGGTATGTGCA 66193 28 100.0 32 ............................ CTCGCCGACGTGCCGCTCCCGGCCCGATGCAT 66253 28 100.0 32 ............................ AAAGCCTGGGCCAGCGCCTGCGCTTTCGCCTT 66313 28 100.0 32 ............................ GACGAGTGTGAGCACGATGGCCAGCAAGGGAA 66373 28 100.0 32 ............................ TACCCCGGAGAGGACCAGTGAACCGCCAGCAA 66433 28 100.0 32 ............................ TTGACGGAGTGCCCAAGACGATCTCGTTCGGT 66493 28 100.0 32 ............................ TGGGCTGCGCTCACCGGACGCGCGTGGCAGAG 66553 28 100.0 32 ............................ TGGTGGCGGCCGCAGGCGTGCTCGAACAGATC 66613 28 96.4 33 ....................T....... CAGACGCCCATCTGCTGAAACCCCTTGGGCGTG 66674 28 85.7 156 ....A................C....GC CTGGCCCGAAGCGGAACCCCTGCTGCCATCAGCTCGTCGCCCGCATAAGCAATCACAGAACAGCGGGAACACCCTCCTCCTTGGCTGGACGCCCGCCCATCGTGGTCCCAGGCCTCCCAAGAAAAACCTGGACGATGACGGTAATATCTCGCAGAA A [66697] 66859 28 92.9 0 .CA......................... | ========== ====== ====== ====== ============================ ============================================================================================================================================================ ================== 58 28 99.5 34 GTTCGCTGCCGCGCAGGCAGCTGAGAAA # Left flank : TGCCTTGAGTACCTTGCTGTCCACCGACTGGCTGCGAGGGATGCGTGACCATGTAGAGTTGGGGGCTTTGTCTGCCGTGCCACAGGATGTCCAGCATCGCCGTCTGCTGCGCCGCCAGTTCAAGACCAGTGCGGAGCGTCTCCGTCATCGACGAATGCGCAGAAAGGGGGAAACCTACGAGCAGGCGGTGCAGGCCATCCCCGACAGCGTGGAACGGCAGCCGGACCTGCCCTATGTGCAGTTGCGCAGCGCCAGCACGGCGCAGCGGTTTTGCCTGTTCCTGGCCTTGGGGGACGCGGAACCGCAGCCCGTGGCCGGTGTGTTCAATACCTATGGCTTGAGCAGCACGGCCACACTGCCCTGGTTCTGACCCTTTTCTGAGGAGTTCTTGCGATCCCCTTATCAATCAGTAGGTTACGAAACACTCAAGAAATTGGGTGTTTCGTGCTTTCCTGCTGGAGATCTTTAACAAATCAATAGGTTAGGAGTTTTTGTTTCTA # Right flank : ACACGGAGATCCACCCAATGCACATCGGCATGGTAGGTTTGGGACGCATGGGCGCCGGGATGGCGCGGCGGCTCATGGACAAGGGGCTGAGTTGCGCTGTCTACGACCCCCAGGAAGACGCCGTCGCCCGGCTGGTGGCGGACGGCGCCGTCGGGGCGGCCTCGCTGGCCGAACTGGTCGAACGGCTGCCGCGACCCCGGGCGGTGTGGCTGATGGTGCCGGCGAGCCTGGTGGACGGGGTGCTGGACCAGCTGGCGCCGCTGCTCGATGCGGACGACGTCGTGATCGATGGCGGCAATTCCTGCTATCACGACGACATCCGGCGGGCGAAGGCGCTGGCGGACCGGGGTGTTCATTATCTGGACGTCGGCACCAGCGGCGGCGTGCATGGCCAGGCCCGGGGCTATTGCCTGATGATCGGCGGCGACGCCGCCGCGGTCGGGCGGCTGGATCCGGTGTTCGCGGCGCTGGCGCCGGGCCGGGACGCCGCCCCGCCCACG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTGAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTGAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //