Array 1 781-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_APAY01000017.1 Acinetobacter baumannii ABNIH7 contig00017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 780 30 96.7 30 .............................C ATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 720 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 660 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 600 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 540 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 480 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 420 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 360 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 300 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 240 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 180 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 120 30 96.7 30 ............................A. GGGCCGCAACCATACGGTCTATGACTTCCA 60 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ============================== ================== 13 30 96.4 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : CATGATCATAGCCCTTATAGATATCGTATTT # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 57-1587 **** Predicted by CRISPRDetect 2.4 *** >NZ_APAY01000270.1 Acinetobacter baumannii ABNIH7 contig00270, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 57 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 117 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 177 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 237 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 297 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 357 30 96.7 30 .................T............ CTCATCGTGAAGGTTTTGCAAATATGCCTT 417 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 477 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 537 30 96.7 30 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTGT 597 30 96.7 30 ............................A. AGCACGAGCAAGTTCTTGAGATGCCAAAAA 657 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 717 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 777 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 837 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 897 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 957 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 1017 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 1078 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 1138 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 1198 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 1258 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 1318 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 1378 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 1438 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 1498 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 1558 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 26 30 94.4 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : ATGGCGGCATACGCCATTTAGAAATAAAAGTAGAGAGTGGCGGTGATTCACTAAGAG # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 26-295 **** Predicted by CRISPRDetect 2.4 *** >NZ_APAY01000309.1 Acinetobacter baumannii ABNIH7 contig00309, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 26 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 86 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 146 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 206 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 266 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================== ================== 5 30 96.0 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : AAGCGGGGTTTTTATTGCCTGAAATG # Right flank : TTGAAACTTATA # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27-236 **** Predicted by CRISPRDetect 2.4 *** >NZ_APAY01000424.1 Acinetobacter baumannii ABNIH7 contig00427, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 27 30 100.0 30 .............................. AAAGGGATTTAAAAGCAGTTACATAAAATT 87 30 100.0 30 .............................. AATTGGATTTCGTAAATCATTGAGCAAGTT 147 30 96.7 30 ............................A. CATCAAGTAGATCAGCAGTTACCTGTTCAG 207 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ============================== ================== 4 30 98.3 30 GTTCATGGCGGCATACGCCATTTAGAAATG # Left flank : AACTTATAGGCTTGGCTTGGGTTATCG # Right flank : CTGTATTAGTGGCCTTCATGTGCATTAAAAGTTCATGGCG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //