Array 1 977133-978241 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050510.1 Pseudomonas chlororaphis subsp. aurantiaca strain B-162 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 977133 28 100.0 32 ............................ GTTGGCTCAGTGCTGATGCGCGACGCCGGGAC 977193 28 100.0 32 ............................ TGGGAAGGCCACGGCCAGAACATCGTCTACGC 977253 28 100.0 32 ............................ AATGAAGAACCCGGCGCTGACCGCCGCTAACG 977313 28 100.0 32 ............................ TTGAGCCATACGAAGTTCAGCGGGTTTATCTC 977373 28 100.0 32 ............................ TAGTTGTCAGCAATACGGCCAACGTCGAACTG 977433 28 100.0 33 ............................ ATCCGTTACTGACGCTTCTTGCATTTTCTTAAA 977494 28 100.0 32 ............................ TGGTCACGCACGCCAGGGCCACCTGGCACGGT 977554 28 100.0 32 ............................ ATAGCCGCGCGCAACGCCGGCGTCTGCAAGAC 977614 28 100.0 32 ............................ TGGTTGTAACGCTGATCGCGGCTAACCACCTC 977674 28 100.0 32 ............................ AGACGAAATGGACATTTGAGGATCTGCAGCAT 977734 28 100.0 32 ............................ AGATACCGCGATGCCACAGGCCATCAGGTCGG 977794 28 100.0 32 ............................ CGGCACCAGTTTCGGTGCCGACCAAAGCACCC 977854 28 100.0 32 ............................ AACAAGCGGCGCCGTAGCCGCTACGTCACGAG 977914 28 100.0 32 ............................ AGGGGATCAGGGTGTAGTTGTCGGGCATGCCC 977974 28 100.0 32 ............................ CTACTGCTGGCCGAGGCCGGCGAAACCTTCAT 978034 28 96.4 32 ...........A................ CAGGATCGCGCCGAACAAGAGCACCGCCTGTT 978094 28 96.4 32 ...........A................ ATCTGCGCTTCGCGGCCAGCGTTGTAGGACTG 978154 28 92.9 32 ...........A..........C..... AGCCGGGCTTTTTGGTTTCTGCAATTTGGCTA 978214 28 67.9 0 .C.........C.C.......CC.AGCG | ========== ====== ====== ====== ============================ ================================= ================== 19 28 97.6 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : ACCGCTCGGTGCTTAAAGCGCTTAAAGAAACAGCCAGCTCTACCATTGGCAACAACTCGCTCTTCACCGTCCGCCCAGGCATCAGCGCCGAAGAGGCGTTGCTGCATGTGTCGATGCTGCTCAAGTCCGCCGAGGAGGTTTCCGACGAGATCACCGAGCACGCCAGCGGTATCGAGCGAGGCCTGATCTGGTCGCTGGTGCATTCCGTGGAGATGGCGCGCGGTGTGGTGGATGCCTTGCTCGATGGTAATCGTCTCTGATCGACAACGGCCCGCTGGCCGCGATCCTCCTTGAGATTCGCGGCTGGGCGGGCCAGCCAAAACGGATTCATGGCGCTAGTCTGAGCGCCGGTGTTCTGTCCCTGACGCTGACCCTTTTTTCCGAACGGATTCCGGCCCTATGTAAATCAAACACTTACAAAGGTCTCTAGAAAGAGGAGTAAATATGGTGTCCAGCATGATTTCTCTTTGAAATCATGGCGCTATTGGGATATCTGTCTA # Right flank : GTTAATCCATAGCATCAGTCCGCGTTGGGAGATAACACCGCGACCCAGTTCCCAATCTCACTCCACAACCATGCCACCTACCAATCCCACCCCTTGTCATATCCCCTTCATCGCCGCCTACTAAGGTTTGCTTTTGACATTAAGTCAGGGAGCAACCATGAGCGATTTCACTCTCGGTCGGCGGCGTTTGATTCAGGTGGCGGGGGCAGGGCTGTTGCTGCCGGGGTTGGCGCCGGCGGTGATTGCCTCAGGCAAGGACCGGCCGAAGATGGTCGATGGCGTGCAGTCCGGGGATCTGCTCGGCGATCGGGCGATGGTCTGGAGCCGTACCGACCGGCCGGCGCGGATGGTGGTGGAGTGGGATACCCGCAGCCTGTTCAGCAACCCGCGCAAGTTTGTCTCCCCCCTGGTCGATGCCCGCACCGACTTCACGGCGCGGGTCGAGTTGGGTGGGCTGCCCACCGACCAGGCGATTTTTTATCGGGTGTACTTCGAAGACG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5821086-5822853 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050510.1 Pseudomonas chlororaphis subsp. aurantiaca strain B-162 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5821086 28 100.0 32 ............................ AGTATGCGGCCACAGTGGGGCAGACGCAGCTT 5821146 28 100.0 32 ............................ ATGATCGAGTGCATCAGCACCGCGGTATCCAT 5821206 28 100.0 32 ............................ TATGTCATCACCAACATCGGCAACACCGTCCG 5821266 28 100.0 32 ............................ ACCAGCAGGCTGCCGTATTCGCGTCGCATCAC 5821326 28 100.0 32 ............................ GCGGTTTGCGTCTTCCTGGGCCTTGAGGAACC 5821386 28 100.0 32 ............................ TGATAATCGACCAGTCGCTGAAAGGGCACATT 5821446 28 100.0 32 ............................ AGATCCTGTCGAAATCACGGTTTACCGTTGAC 5821506 28 100.0 32 ............................ AAGGCCGCCGCCGAGCGCCGCGAGCTGGAGCT 5821566 28 100.0 32 ............................ CGGCTGATCGAGCGCGGTAGCGCAGTGAAGAC 5821626 28 100.0 32 ............................ TTTTGGCGTTTGGCCAGAAGGCCGCGCAGCGC 5821686 28 100.0 32 ............................ TACCGCGAGAGCTACGGCCGCAGAACTATGGA 5821746 28 100.0 32 ............................ TGGTCGAGGAAGGCGACGACCTGCAGCCTGGC 5821806 28 100.0 32 ............................ GCTGCGCCCGGTCAACACAACTCAGAGCGATT 5821866 28 100.0 32 ............................ CTGATCTGATTCCTATTTCGCTTTGGGACGAT 5821926 28 100.0 32 ............................ TGCTGGCGAAATCAGTAGGTTTTATGTGCCGC 5821986 28 100.0 32 ............................ TCGTCATCATGCTCCTCCCTGTTAAAGCTACG 5822046 28 100.0 32 ............................ GTGAGACGGTCGGCCACCGGGCGGCGGTCCTC 5822106 28 100.0 32 ............................ GCCCCCTGATGAGGACGAAAAGTTGCAGCAAG 5822166 28 100.0 32 ............................ TGGCCCAGGGAATTGCGCGGCGTGCCGGTGTG 5822226 28 100.0 32 ............................ TTCCAGCCGCCCGCTGCCGGCGGCTTGACCAT 5822286 28 100.0 32 ............................ AGGCATCGTTCACCGGCGGTTCGCAGATGCAC 5822346 28 100.0 32 ............................ AGGCCGAACGCGAAGCCACTCTGCGCCGCGAG 5822406 28 100.0 32 ............................ ATGCGGTGGAGACCGCGGTTGATCGCTTCGTC 5822466 28 100.0 32 ............................ AAAGCGAAGCAGCGCTCGGTAACTGCTGATGA 5822526 28 100.0 32 ............................ ACGTACCCGTCGGGCACGCCCCGGGTTTGTGC 5822586 28 100.0 32 ............................ AGGGAAACATTGATGTTGCCGCTCTGGCTCTT 5822646 28 100.0 32 ............................ ATCTGCAGTACCGCTGCCGGCGCCGTCTGTAA 5822706 28 100.0 32 ............................ CTTCGGGCGCTAAGACCCGGATAAATCGCCCC 5822766 28 96.4 32 ............A............... TGTCCGCAGCCTTCCAATTCGATAATTCATTT 5822826 28 67.9 0 T..........C.........CCGTTCC | ========== ====== ====== ====== ============================ ================================ ================== 30 28 98.8 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGCACTGGCAAGCCTGTTGGCGCTGAACTGGCTGACGGGCATGCGCGATCACGTACAACCGAGCGAACTCCGCGCAGTACCAAGCCCAGTGCAATACCGGCATGTCAGCCGCGTGCAGACAGACAGCAACCCCGAACGCGCTCGCCGACGCCTGATCAAGCGTCACGGGATTACCGAAGAAGAAGCCCGCCAACGGATTCCCGACCACGCCGCAAAACGCTGCGACCTGCCCTTCGCCAACCTGCGCAGCCACAGCAACGGCCAGACCTTCCGCCTGTTCGTCCGTCATGGTCCATTGCTCGACACACCACAGCCAGGCAGTTTTGGCAGTTATGGTTTGAGCACGACGGCAACCATCCCCTGGTTCTGACCCTCTTTTTTCCGCCTGACAAAGCCCCTTGTAAAATCAATGAGTTACAGGGGGCCACGGAAAAAGCCTATAAACCCGGTTTTGAAGGGTTTTCTCTTTAAGAACGTGGGGTTATGGAGGGAGGGGTCTA # Right flank : CCTTCTCTACGGCTCAAAAACGCACCCTCAACACACTCCCCAACCACCTCCCCCCGACATCCAGAATTTTCATACTGACCCCCGCACTTTATTTCGTTTGCGACGCGGCCTCGCTCTTGGCTTAGATAGCCGCCATGTTCCAGGTAGCCAGAGCCCTTAGCCCATGAGCAGCGAAAGCATCAGCCAGTCGATTTCCATCGTTCACCCCATCCGCCTGAGCCACGGCAAGAATGCCGAGGTGTGGGACGAGAACGGCAAGCGCTACATCGATTTCGTCGGCGGGATCGGCGTGCTCAACCTGGGGCATTGTCATCCGCGGGTGGTGGCGGCGATTCAGCAGCAGGCCACCCGGCTGACCCACTACGCGTTCAACGCGGCGCCCCACGGGCCCTATGTCGAGTTCATGGAGCGGCTGGCGCGTTTCATGCCCTTGAGTTACCCGGTCAGCGGCATGCTCACCAACAGCGGCGCGGAAGCGGCGGAGAACGCCTTGAAGATCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //