Array 1 1474809-1475201 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018180.1 Nostoc carneum NIES-2107 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1474809 37 100.0 34 ..................................... TTCACGATTGTATAAAATCCACTTCGGATAAAAT 1474880 37 100.0 34 ..................................... AATGAGGAAATTGAGCAGTTTGCCGAGATAAATG 1474951 37 100.0 34 ..................................... GGCAGCGAATATGGGCTGATTACCCGTAATATTC 1475022 37 100.0 34 ..................................... GAGGCTTACACTTACTTGACCGCAGGCGATCGCC 1475093 36 91.9 36 .................-..............T.G.. GCGATCCTCTCGTAGGTGTACCCAGCACGACGGTAG 1475165 37 70.3 0 ...AA..T...GT.ATTA.T..A.............. | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 93.7 35 GTGGCAACAACCCTCCCGGAACTGGGTGGGTTGAAAG # Left flank : AAAGCAAAGGAATTGGCACTTTCTGCATACCATGACCGCCTAGCTAGGCGAAGTTGACAAATATCTGAACCTTGATAATAAAATAATCAATAGCGCCGCATCATGCTGCTTGCAGCCTCTGAACTGTGTTAAATAAGGGTTAGTTTGACTGTAGCAATATAGTCTTGCTTTCTGACCCTAGTAGCTGCTCACCCTGATGCTGCTGTCTTCGGACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACTAAATCACCCCCGACCAAGGGGGAACCCTCCCCAATTCTTCATTTGAAGGACTAAAATCAAGGCAAAATTTCTCAGAAGTCCGCACAATTTCCAAATAGCTTGTCCAGTCTGAATTTCATTGTTTTTATTCAAGACATGATTTTTGAGGCTTAGGCTGAAATAGAAATTTAGGAGACATCCGCGCTAAGGACATCGTAAAACTTTGCCCCACAATATTTTGAAACTGGGTCG # Right flank : GAAGTCTCCTCACACCACATAAAAAGCTGTGGATTGTGACAAAAACGTTCTTAGTACAGGCTGGATTCAAAACTTGTTCATGTCATCAATTGTACTGTTTTACCTTGCGACTCACTGCCAACAAACTCTCCGGCACTAGGTGAGTTTTCCAGGCAAATATCTTTACCAGTAATAGTCAGAAATTTTTGTGGTTTTAAATTTGTTAAAGTCTTAACCAAAATTAGAGAGATGAAAGAAACTCATCATGGCATACTTAAAGCTATTGTTTATAAATCAGCTTTTTAGGGTAAATGAAGTTATATTAGCCTTGTAGTAGTTATAGACTGCTAAGTAAAATGGGTTTATATAAATGACAGATTGCCATTCACAAAATACAAGTTGTATCTTAAACGACACTTAAATTGTGAATGGTTGTAAACAGTCGATAAGACATTAATTTGTGAAACAACGACGCTAAAATGTGAAAAACGACATTAATTTGTGAACGGCGACATCTAATT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAACAACCCTCCCGGAACTGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 1767600-1769103 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018180.1 Nostoc carneum NIES-2107 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1767600 37 100.0 35 ..................................... GTAGCTGAGGTTAACCCCACTGCTGCAAAGTCAGA 1767672 37 100.0 41 ..................................... GAAAATCGCCATGCACTAGTAGTTTTGATATTGAGGCTGGA 1767750 37 100.0 38 ..................................... TGGTCAGTCTCAAATATTCTCGTTCTAAATCTTCTTGT 1767825 37 100.0 36 ..................................... GTTACCTATGAATCTTAAACAATATCTGGTTAACCC 1767898 37 100.0 35 ..................................... GCAAGTATCCAGTATTGCGATACATGATTTTGCCA 1767970 37 100.0 37 ..................................... GAGAAAATTGCGCTATCACAATATCCCCACTACTGCG 1768044 37 100.0 36 ..................................... ACAAGTTCCAACCAATAGAAATTCACTATGTTGACT 1768117 37 100.0 33 ..................................... CTTCAACGCTCGGAAATCTTATAGGGCTAAGTA 1768187 37 100.0 37 ..................................... AAGATTACCAAGTTAGAGAAAATGCAGAAGTTGTAGA 1768261 37 100.0 38 ..................................... AACTAGAGTTAGTGGGAATTAGTATTGACACTAGTAAA 1768336 37 100.0 35 ..................................... CCGTTTCCCAGAGGTGTGCCCACAGGGACAGTTGG 1768408 37 100.0 37 ..................................... ATGATTAATCACCTTGCATACCTTATGTGAGCATAAA 1768482 37 100.0 33 ..................................... AAGTAATGCCGCTAGTGCAGCTATAGCGGTTAA 1768552 37 100.0 37 ..................................... AATACTTGTCAGGAATGCCGAACTCTGTGGCTGTAGC 1768626 37 100.0 37 ..................................... TACAGACCTAGAAAATCAGTAAATGGCTGTGGCGGTA 1768700 37 100.0 35 ..................................... ACTTAATAGCCTAGAATAGTAGATTTAACTATTGA 1768772 37 100.0 37 ..................................... TTTACAGTTTGTGTACGACCGCACATCTAATGACAAC 1768846 37 100.0 37 ..................................... GTCCCAACAGCAGCAGAAGTAGACAAACTAGATCCAG 1768920 37 100.0 37 ..................................... TTTTTCCTGATTTCAAACCTTGTTAACAAATATAAAA 1768994 37 100.0 36 ..................................... AATTTTGGCAAAACTTCGCTTTCTAGTTCTGCTACT 1769067 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 21 37 100.0 36 GTTTCCACAACCTATTACCCCGCAAGGGGATTGAAAC # Left flank : ATGGGGAATGGGTAATGGGTAATAGTAATTTCTCCCTGTCCCCTCACCTCCCTTATCCCCCTCATCTCCCTCACCTCCAATAGACCTCTTGCATGAATCTTTACCCTCACCCTAAATCCCTCTCCCATGCTTGGGAGAGGGACTTTGATATCGGCTCCCCTTCTCCCGAAATTGGGAGAAGGGGCTCTTGGATGAGGGTAAGTTTTGTATTTGTGCAAGAAGTCTAATTTATTGGGACTAAAAGCTAGACAAGATTTGTAAGTGGTTTTATCATTATGATGAATTTAACAGCTTGATGTTTGGCAAGTCGAAGTGGGGGCGAAAACCCTGGGGTATCTGCCAAAATCGCCAGAACCTTGACAAGTGAATAATTACAGCCTTTTAGCAATCATGAAAGTTGCAAATTAGTTTCAATAAGGTGGGCTGAAAATGATTAAAATTTTCGATCTGCCAAAATGCTTTCCAGGAAGCTTGCTCTGGTTAGGTTTCAATACCGAGCA # Right flank : CAATTCAAGCAATGAAATATGCCAAAAGTCTCTACAGAGTTTCTGCTTGCAAGGCTGACTTTGCGATCGCATTTCCCCGCAAGAGGATGAAAATAAAGCTAAAAATTTTTGGCGATCGCATCGTCTCAAATAGGAACCGAAATATTCCGATTTACCTAAACTCCTCGATTCATCTACCGCCACACCGGAAGATGAATCGAGGACTAAAAACGAAACGCCCCTTGACCCAATTAAACCGTATGTTTAATAGAGACAGGGGTAGTTGAGTTTTTAGTAATATCCGTATTTAGTTAGCTTTTGCCTGTGGAGGAATAATTTCCAAACCATATTTTGGAGCAAATAGCATAACTTTTTCAATATCTGCAGGAGTAACTGTAGGTGATTGCGACATCTCTATTGCAGGTACACCTATTTCCATAAAAAATTTCTCTAAACCAGCTGGTGTGACCCAGCATAATAATTTTGCAGGTTGTGTACCAATGTTGGTAAATCTGTGCAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACAACCTATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 3 1996495-1993462 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018180.1 Nostoc carneum NIES-2107 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1996494 37 100.0 38 ..................................... TGCAGTAATAAATGTAGTAAACTCTCTGGTCTTCAGAA 1996419 37 100.0 36 ..................................... TAGTGAGAACGCTAGCAAATGAGGGGAAAGTCCCTT 1996346 37 100.0 33 ..................................... AGTCGTCCCATTCCGGAAAACAGTCCCAGTAAA 1996276 37 100.0 37 ..................................... TAGTGAGAACGCTAGCAAATGAGGGGAAAGTCCCTTA 1996202 37 100.0 38 ..................................... TAGAAAATGCCTATACCCTTATAAAGCCAACCTATTAA 1996127 37 100.0 35 ..................................... TACATTTCTGGATTACTGTTATCGATAACAACATC 1996055 37 100.0 34 ..................................... TATTAGGTGTTGCAGCGTTAACAGCGTCTCTAAT 1995984 37 100.0 39 ..................................... CAACTGGAATCATACCCCACTAGATTTCACATACCCCAA 1995908 37 100.0 36 ..................................... GTCTTTGACGGCGCTCTCGAATTCCGCGACAGCTAG 1995835 37 100.0 35 ..................................... AAGCCAGTACTAACTAAGTCAGCTTTTAGTATTGT 1995763 37 100.0 38 ..................................... AGAGACTTTTGGAACCAGCCAAAATACCTGTTTCTTTG 1995688 37 100.0 36 ..................................... AAAAATTTAGCCACGCAAACTTTTGACACCGCGCAA 1995615 37 100.0 38 ..................................... CCCAAGTAAGTGGCACGCCTACTGCTCAAACATTTCTT 1995540 37 100.0 39 ..................................... AATTTTTGCAGGAGAAAGAGATAGAAGTCATCAGCTATG 1995464 37 100.0 33 ..................................... TCGCGTATCGAGAGAGAATATCGTGCCGATAAT 1995394 37 100.0 37 ..................................... CCCCTACATCAGATTTAAAATCATCGTCACAAAGCAA 1995320 37 100.0 38 ..................................... TTGGATCGGGAATCGAGAACACCGCGAAGGATTCAGGA 1995245 37 100.0 36 ..................................... AATCTTGGGAACTTAATGTTACAACACCAGCGGAAG 1995172 37 100.0 38 ..................................... ATAGTAATGCACTGCTTTCTCCCACTCAGACACGCCCA 1995097 37 100.0 36 ..................................... TTCGCTGTCGTACACAACAGGCTGAGTAGTTTTATC 1995024 37 100.0 36 ..................................... CCTCACCTAACATCTCTACAGTAGGTGCGACAGCAA 1994951 37 100.0 39 ..................................... ATCAAGCGTAAATATTCTCGCTCTAAGTCTTCTTGTTTG 1994875 37 100.0 33 ..................................... TGAGATAGCCGTTAACGGTAACGCTGCCGCCAT 1994805 37 100.0 34 ..................................... CGGAATCGAATTAGTTGGATAGATGGGAATCAGT 1994734 37 100.0 34 ..................................... GCTTCATTGACTTGTACTACGGGGATTAACTGAA 1994663 37 100.0 33 ..................................... ATAAGCGATCGCCAACAGAACCCAAGCCCGCCC 1994593 37 100.0 33 ..................................... TGGTCACGGTTGCCGTGCCACCTCATGGAACTA 1994523 37 100.0 35 ..................................... AAGAATTTTGATGAATCTGCGCCGCTAGGGAGAAC 1994451 37 100.0 35 ..................................... TTCTAAAAGGGTGTAAGTACTGATGTATATACGCC 1994379 37 100.0 34 ..................................... AAGTAATGGCAATTGACCCTACCCGTCCAGTCAC 1994308 37 100.0 37 ..................................... GGGAGTTGTAGCAAATGGCGTAATTTACAGCTACTAT 1994234 37 100.0 35 ..................................... TCAGCAGTAGCAATTCATCATCCTAGCGAAGGCAG 1994162 37 100.0 37 ..................................... GTGTTTGCTGTCGCACCTACTGTGGAGATGTTAGGAG 1994088 37 100.0 38 ..................................... CTGTTTAACGCTAGCTGTGTGTCCATTGATTACGTCAA 1994013 37 100.0 37 ..................................... TTACTACTACCAATGACATCTACCCGTTCCTTATCGT 1993939 37 100.0 37 ..................................... ATAGTATGTCTCATATCGTGTGACGGTCGCGTATTTG 1993865 37 100.0 39 ..................................... CAACTTACCAAGCAGTTAATTACGATTTTAACTATTTCA 1993789 37 100.0 36 ..................................... ATGGAGTAAAAGATGGATACTTTGCAAGCAATAAGG 1993716 37 100.0 36 ..................................... GAGAAGGACAAGGATCTGTCAGATGACGAAAAGTTA 1993643 37 100.0 35 ..................................... TTTTACCTCCAGTGTGTTAACGTGACGTTGGACTG 1993571 37 89.2 36 .....................GCAA............ TTGCCGTTCGCTACAAAGCACACGCCATCATAATAG 1993498 36 89.2 0 .....................G-..A..........A | A [1993472] ========== ====== ====== ====== ===================================== ======================================= ================== 42 37 99.5 36 CTTTCAAATTAATGAAACCCGTTCGCGGGATTGAAAC # Left flank : TGAAAGTGGACAGACACATCCAGTGGGTGGTTGAAGGTCGCTAGCTCTTTGTGTGACAAGGCATTGAGACTTACAGCCAAGGGGACAGTTCTCAATTCCTGGGTTGAGTTGAGAGTAAAGAGGTTGTAAAGAAAGTTTCACCTTACTTACCCTGTGTGATTTGCACTCAGTCTAATACTGGTTTCGGAAATGTTGCTATCAAAATTTGATATCAATGTTCTTTTCTTGACATGACACTGTATAATTTTTGTAAAGTTATCCTTTGTATCCGTAAAAAAATCAGCTTATAATCTGCAAATACCGCTGAGTTTTTGGCAGGGGAAAGCACGGGCAAAAACCCCCCACCTCCCGCCAAATCGCCAGAACCTAGACAATTAAATAGTTTCAGAGTTTTGAGTAATCTTTGGCTCGCTGTTTCTAACGGCTGAAATGGACTTTTAAAACAGTCCCGCCAAAATTGCTTATGGAACTCGCTCTATAACTCGGTTGTGGCTGGCGGA # Right flank : TGTCTGCGCCTACTGCTAGCGTCTCAGGTTGCATTAAACTTTCAAATTAATGAAACAAGCCAAAATTTTCTGCTAAACTCTCAAGTTAATGATTCTTTGCCATCTGTAGGAATATTTTCCTCAAGTATGCCCGCCAAAAATGACGGCAATTACAACCAAATCGCCTTTGCTCTAGAAATCCTGAGACTTCTAGCTGAAAAACCGCGACGACGCAAAGATTTAGAAGATTTACTTTTAACCTTTTTAGAACAACATGGTAAATCAGCCGATAGTGCTGATATCAAGCAAAAAATTACCCGCACAATTCGCAAACTGAGAGACTGCGGTATTGAAATTAAAAGCAGTACTCACAGCCCTTATGAACTAGTCGAGTCAAAATTTCCTGTGCTTCTCTCGACAGAACAGAGAGAAGCCCTTGCAGTAGCCGCATATTTCTTATCTGATATGGGCTTTTCGGCACAAGCCAGCCAAATTCAACGCATTGGTAACCTGACAGAATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATTAATGAAACCCGTTCGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 4 2006898-2007444 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018180.1 Nostoc carneum NIES-2107 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2006898 37 100.0 35 ..................................... ATAACTCTGGAAAAGGAAGCTGAGAATAAAGTTAG 2006970 37 100.0 37 ..................................... GTGCAATGTGTGAAAGTGCCCAAGGTGGTTGCCTTGG 2007044 37 100.0 37 ..................................... AAAATGTACTTCCTTGAGTAACAAGCACAAGCTTATA 2007118 37 100.0 37 ..................................... CTTTCGGCGGGGGATATCCCAATGTTCGCGGCTTCGA 2007192 37 100.0 35 ..................................... TTTACGTCTTTCCTCTAAAAGCGCAAGCACCTGAG 2007264 37 100.0 37 ..................................... AAAAGTTTCCTTTATCGTCTCTTTTACGGGCAGTCAT 2007338 37 100.0 33 ..................................... CTCAGGGCTTGTTGTGCTGCAATAGGAAGAATA 2007408 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 100.0 36 CTTTCAAATTAATGAAACCCGTTCGCGGGATTGAAAC # Left flank : TGACTACTTTGTTCTACCTCATAATTTATGATTTGCCTGATAATAAAAAGGCGAATAAGCGGCGCACAAAACTACATAAAATGCTCTCTGGGTATGGAACTTGGACGCAGTACAGTGTGTTTGAATGTTTTTTAAACGCTGTGCAGTTTGCTAAATTGAAGGTGCAAGTTGAAAGCTTGATTAAACCCACTGAAGATTCAGTACGTATCTATGTCTTGGATGCTGGAGCAGTACGTAAAACTATTACCTACGGTTCTGAACAACCTCGACAGCAAGAGACGATCATATTATGATGCTACTAGTCAGATTTTTGGCAGGGGAAAGCACGGGCGAAAACCCCCCACCTCCCGCCAAATGGCCAGAACCTTGATAATTCAATAGTTTCAGCTTTTTAAGTATGAATGTAGAGCCTGTTAATGAATGCCGGAAACGGACTTTTAAACTCGACTTGCCAAAATCGCTGGTAGAAATGGCTCTATAATTAGCTTCTGGCTGGCGGA # Right flank : CAAACTCTAACAGCAGAGCTTTCTGCTTACAACTCTACCAATTTTTGAGAGCAGCGATAAAAGCGGACTGCGATCGCCCTAATCAAGCGAGGAAAACTGATGAGCGATACCAGCCAGGTTACTTGGGAAAGTCGCCCCCTCAGCGCTACATCATCAAAAATCAGGCATAAAACGATTTGAAGGGGCTATTTGCCTTTATGCTGAAGCGGAAGGGAGAAAAAACATTTATGAGACAAAATCCCACCTACCACCTTAGCTTACTGAAAGCCCTGACTCTAGCTTTCTTTGTATTGGCATCCGTAATGCCCCCAACTGTTTTAGCCAACGAAAGCGAAAAAGCGACATTCAACAGTACAACCACGCTCCAAACTATACTGAAGAGCAGTCATCGCTCAGAGCAGAATCGCCTCCGAGACAAGTACCGCCACCCCGCCGACACTCTCGAATTCTTCGGTCTGCGCTCCAATATGACCGTAGTTGAATTATGGCCGGGGGGTGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATTAATGAAACCCGTTCGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 5 5304281-5303079 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018180.1 Nostoc carneum NIES-2107 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 5304280 37 100.0 36 ..................................... ATGTTTCAGGCTCACTATCTCGCCATGCCCACACCA 5304207 37 100.0 37 ..................................... TGCTACGTGTTGTAGATACAAAGCAGAGTGGGTTAAA 5304133 37 100.0 34 ..................................... TATTTTCTCCCTGTGCCGCACCTGCTACACCAAA 5304062 37 100.0 36 ..................................... GCTTTCTACTGTATTATCAAGTTCTTTGTAATTATT 5303989 37 100.0 35 ..................................... ATCCTGAACTGCCAGAGCAGGCACAAGGGCTACAT 5303917 37 100.0 37 ..................................... GAAAAGCTGTTGAATTATACAACGAGAGAAATAAAAT 5303843 37 100.0 35 ..................................... GGACATGGAACCTCGTAAAAGCATATTCCCTACTG 5303771 37 100.0 37 ..................................... CCAGCACGTTCCATGAAGATACGCGGGTTGAAGTTGT 5303697 37 100.0 36 ..................................... AGCCACTTCGATAGTAAGCCAGCCGCGCCACGATGG 5303624 37 100.0 35 ..................................... TTATTACTGAATTTTGTATCATTCGTGCTCAGAAA 5303552 37 100.0 35 ..................................... TCATATCTACCGCAATATTGCTAAGAAATGTTTGA 5303480 37 100.0 35 ..................................... AAAAACTGCTAATGATTCTCAGAAAACATTGGTTG 5303408 37 100.0 38 ..................................... TATGTTGTTGAATTTGGATGTGAGCTAATCTTTTATAA 5303333 37 94.6 37 ...........T....................A.... TGCTACCAAGCTACTTAATATTGAGGAACTTAGTTAG 5303259 37 89.2 33 ...........T.........TC.............A ATTTCAAATTGATTTTTCTCAGATCCGGAACAT 5303189 37 86.5 36 ....G................AC.........T..G. TTTTCCACTGCAGTTTGAACGTCAGCAGAAACCGTA 5303116 37 81.1 0 .....C...A..T........AC.........C...T | C [5303081] ========== ====== ====== ====== ===================================== ====================================== ================== 17 37 97.1 36 CTTTCAGCTTACATACTCCCCGTAAGGGGATTGAAAC # Left flank : TGGAAGAACTACCGGGCCTCATTTGCATTGGGGATTGAAGTATGACACTAACTATGTAGATCCAGCAATGGTTTTGCGAGAAATGTTTTCCCAACAGCAAATTGCTAGAAGAGGCGGATCAACAATTAATGCTCAACAGTCACAAGTCGTAATTCAAGAATCAGCAACTACTGGCGATTCTGGTTATTAAATGTTAAATAGGGGCTGTTTTATAGCTTTTCAGCAAGTGTATTTCATGTCCTCTATTACCAATTAGCTGGAAAATAAAGATTGACAAATCAGCTGCTAGATTCTAGTGTGTAATAAGAATTTTGGCAGGGCAAAGCAGGAGCAAAAAACCTGGGGTTGCTGCCAAATCGCCAGAACCTAGACAATAAAATAGTTTTGGAGTTTCAATTGTTTCAATTGATAGTTTTTGCAACCTGATTTTTCAACAAAAAATAGGCTGCTGCCAAAATCCTATCTAGAGTCTGCTTATTATCTCGTGTTCCACGGGCGGA # Right flank : TTCACATTGTTGAGCAAAGAGCGATCGCTTTTAATTAACCGCATTCTACATATACAGCAAGCAAGATGTTACCAAGCGGATAAATTAGCTAGAACTTTTGAAACTAAATAGATTTAAGAAGAAAATTTGATACAGTCCGGAAAAGATTGTTCCTAAAGTGAAGTTTGGCTCCAGTAGAAGATTTTGCTTGAGCTATGAATAAAAAATACTTATGCAGTAAGCTGGGACTACTGTTAGCACTTATATTGCTTTGCTCACCCTCTGTTGCTATTGCTCAAACAGAAGTACAGAGTCAAGATGACATATTAATTGAAGCAGTTTCAACCGATCAGATTGATGTGGTAAAAAATTATCTTGATAATGGCGGCGATCCTGATAGATATTTTGCATTAGCGGTGAGTGATGGTGCCATGCAAAGCGTTCAAATGATGCTGCGGCGAGGCGCAAATGTGAATTATGGCGATCAATATGGCATTACACCTTTGATGGTTGCAGCTAGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGCTTACATACTCCCCGTAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 6 6601102-6601349 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018180.1 Nostoc carneum NIES-2107 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 6601102 36 100.0 34 .................................... ATGAAGCCTGCCAATTACCCGATGTTAGTGGTTA 6601172 36 100.0 35 .................................... GGTTCTTTGCAGCCATCCCCGACTGCTAGTCTCGC 6601243 36 100.0 35 .................................... CATATTGACGCTGACTATTGCCCCTATGAGTGCGT 6601314 36 91.7 0 ..G...........C....................A | ========== ====== ====== ====== ==================================== =================================== ================== 4 36 97.9 35 GTAATTCGTGGCTTGATGCCGTTAGGCGTTGCTCAG # Left flank : TAAGACGGTTTGGCTGTTTATTTTTGGGAGAAAGTGACCAGTTGATTAAATCAATCAAACTTGTCTCTCAAGATTATCTACAGGGGGTGAGACATTGGGCGATTAGGGATAATCGAGGCAGATTAACCTTACCCTATTGGGTTGACCATGTGGGGTCAAGAAATACGCGATTTTTAAGGTATCGAATTGAAGAAATGCCAAGTTCACCACCTCCTGATTTGGCGTGGACAATGGTTCAATCCCCAATTTGACAAGTATCTTTATATGGGAAACGGAATTTAGGGTGGAAGAATGGCGGCAAGGTTTACATGCTAAGGGCTATAGTAATTGAGGCAAGGAAAAAGGTGCTTGCTATTTTTGGAAAAGTTTATCAGCACTGGGTTTGAGAGGCTGAAAGTCAGGGAAGGTTTGCTAAGTTTTGCGTTTTTGGTTTCTCAATTTGGAAGGTAGTTGTAAGATTGTAAATGAGCCTTCCTCAGTTAAGGGTTTTCACCTTTGCT # Right flank : AAGCGATCGCCCACTGGTTTAAGATGGAGTGCGATCGCTACTTAGTGCAAATCAACCAGAGAGATTTTCTATGCATACAAGAAAGAGAGGTAATTCAATTACCTCTCCAAGTGATGGGATAAATGCTTCGTGTGCTATGCTGCGTCGGCTACTAGTAAGCCATTAACAGCGATGATGATTATTTGCGCTGCTAAAGGTGTATCGCAACATGGTCTATCATCGCTATTACAGGGTTGTGCTACCCATTTCCCTTCTAGATTTTGGTAGAAAGTGCCAAGTAGTTGAGAACCATTCCAGACTCTATACAGTTCACCCAAGTCATCTGGTACTGAGTCAATTTCAATTTCTGGTACTACTGGGTCGGCAAGCTGGTCAATATATTCCTCGAACTCTGATTCAGCCAAAGCTGAGTTACCAAAGTCATCTTGTACAATCATCATAAGTAACCTCATTAACGGGGTTGAACAAAAGGCGATCGCATTTCTCTTGCCGGAGGGGCG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATTCGTGGCTTGATGCCGTTAGGCGTTGCTCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 7 7761564-7761810 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018180.1 Nostoc carneum NIES-2107 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ====================================== ================== 7761564 34 100.0 37 .................................. CCTTACTGTACTAAGTCCAACTCCCAAGTAATTACGG 7761635 34 100.0 36 .................................. CCGTTTGAGGCGTGAGTCGTAAACTTGTGTAAATGT 7761705 34 100.0 38 .................................. CTGACACCAAATATGGTAAAAGCTACCACAACTAATAT 7761777 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ====================================== ================== 4 34 100.0 37 CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAA # Left flank : CTTCAAAAACTATAAAGAACTCTATAAGCGATCGCTGATAAGTCTCAAGAACTTTTACTAAGGTAAACTGTTACTCATAATTGATAAGTTAAGCTTATTGGCAATAGTTAAAGTTACATATTATGAGTCAATAAGCAAAATTACTTAAAATGTTTCTAAAATTGGATTCGGAAACACAATTTTTGAGCAGGCAGTGCCAAAGATGCTCTGACGCTGACATTTAACTCCAAAAAAATCTATTCTTTTAATGTATTGTTGGTAATGATTTTATTGGCTGAGTTAAATCAGTGGGAAATAAATTGCACTTGTTTCGGGGCTGAAGTCGAAAGCCTCAAACCTCGATTCTTTCGTTCACAGCCCCGGCAACCTTATCAATTATGGGTTTCAGGCTTTTTTCATCAAGGATAATTCTCAAATTCGAGTCTCATCTTAAGTAAATTTGACAAGCCCCGAAAATCTGCTGTAGGATTGCCGCTAGGTAAGGCTTTCAGAGCCTAGCC # Right flank : ATATTTTATATAATAAAGTCGGAAATTATAACTCCGACTTTCAGTTATTTGTATAGAGAAATTACCCTTTGACAATACATTTATGGCTTTCTAATATAAGATACATACGGTGAAACCGATGACTGCTAATGACATAGGCAGGTAAGAGCATAGCAAGATTTTCATCTTACAAGATGAAATTAAGATAAACTAACCAATAAATCACATAAATAACTATGAATGTACAACTTGTAAACTCTTTGGTAGAGGTGGTACTAAATCTCTCTCCTGAAGACCAGAAGCTTTTTCATTCTAGACTCCACACCAAACAGCTAGAGAAAGCAACTTACAAACAAATGACACCAACTGAAAAAGCCGAAAAATTTCGTCAATGGCTGGCTCAATTTCCTAAAAGTAGTGTAAGCCTACCTGCTGAAGCCAGTCTGCGCGAGAATATTTATGGCGATCGCGGTGTATGACAAGCTATCTACTTGATACAAATATTATTCTTAGATTTGCTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAATTAATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.59%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //