Array 1 39797-38486 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFJZ01000082.1 Escherichia coli strain HH-NP015 sequence082, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39796 29 100.0 32 ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 39735 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 39674 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 39613 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 39552 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 39491 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 39430 29 100.0 32 ............................. CCGGTCGCGCTATTGAGCCGTTCTTTTCACAG 39369 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 39308 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 39247 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 39186 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 39124 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 39063 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 39002 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 38941 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 38880 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 38819 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 38758 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 38697 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 38636 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38575 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38514 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 794-154 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFJZ01000104.1 Escherichia coli strain HH-NP015 sequence104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 793 29 100.0 33 ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 731 29 100.0 32 ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 670 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 609 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 548 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 487 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 426 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 365 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 304 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 243 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 182 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //