Array 1 5336-6521 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBRI01000008.1 Salmonella enterica subsp. enterica serovar Newport strain NY_FSL S10-1632 NODE_8_length_187391_cov_43.1925_ID_5320, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5336 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 5397 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 5458 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 5519 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 5580 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 5641 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 5702 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 5763 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 5824 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 5885 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 5946 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 6007 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 6068 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 6129 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 6190 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 6251 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 6312 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 6373 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 6434 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6494 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23191-24806 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBRI01000008.1 Salmonella enterica subsp. enterica serovar Newport strain NY_FSL S10-1632 NODE_8_length_187391_cov_43.1925_ID_5320, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23191 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 23252 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 23313 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 23374 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 23435 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 23496 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 23557 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 23618 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 23679 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 23740 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 23801 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 23862 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 23923 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 23984 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 24045 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 24106 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 24167 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 24228 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 24289 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 24350 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 24411 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 24472 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 24533 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 24594 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 24655 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 24716 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 24777 29 100.0 0 ............................. | A [24804] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //