Array 1 61213-61002 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWN01000023.1 Castellaniella caeni NBRC 101664, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61212 29 100.0 32 ............................. GCGTCGGCATGTTCATGCAAACACTGCAAGGG 61151 29 89.7 32 G.GT......................... ATCAGAGTATGTCGCGCAGGCTGCTGATGAGC 61090 28 75.9 32 G.GT..................-AC..T. CAGCAATTCTGCATGGCACTGTCAAACAGCGG 61030 29 82.8 0 ......................AC.CT.T | ========== ====== ====== ====== ============================= ================================ ================== 4 29 87.1 32 TTCATCCCCACGTGCGTGGGGATGAACCG # Left flank : CACAGCCACACACTAACGGATGTGCGTAATAGTCACG # Right flank : AAAAGCAAGCCATTGATTCAAATGAAGAAAAATGGCATGAAAAATTCTACCGGCTTTTTTGTTAAAGATCGGCACTCACGAAACAGCAACCTTACACCAACCTTCTTGCATCCCACAAAGAACCCGCGCACGCGGGACACACCCCCTCACCCCCACATTGAACGATAATACCGACTCTCCTCCGCAACTCCTCGCCACGCCTTCCCGCATGACCTCCCCCGATCTCTCCGGCCACACCCCCATGATGAAGCAGTATTTACAGCTCAAGGCCCAGGCGGGCTCGCATCTGCTGTTCTATCGCATGGGCGACTTCTACGAGATGTTCTATGACGATGCCGAGCGTGGGGCCAAGTTGCTGAACCTCACGCTCACCAAGCGGGGCACGTCCAACGGGGCGCCGATCCCGATGGCGGGGGTGCCGCATCACGCCATGGAAGGCTATCTGGCGCGGCTGGTGGCGCTGGGCGAATCGATCGCCATCTGCGAGCAGGTGGGCGACC # Questionable array : NO Score: 3.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCATCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : TTCATCCCCACGTGCGTGGGGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49951-48149 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWN01000026.1 Castellaniella caeni NBRC 101664, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 49950 25 62.1 32 ----........CA........AC.CT.T GGTACTGCTTCATGGGAAATTTGGGACTGCGG 49893 29 69.0 32 T.CA........CA........AC.C.T. ACCAGCCAGTTCACGCGCAACGCCGGGTTCGG 49832 28 69.0 33 T.CA........CA........-AC..A. AAGGGCAACGAAATCGCCAACATCAACCGGCGG 49771 29 82.8 32 T.CA........CA............... TCGTCGCCCTTAATGGCTTTGAAGGTCGATAC 49710 29 93.1 33 ............CA............... CTCGGCGGTGAGGACATGGCGGGCGACGTGCGC 49648 29 75.9 32 ............CAT.......AC.GT.. TCGTTGTATTTGTCAGTCATCGACTGTCGCGG C [49623] 49586 29 62.1 33 T.CA.......A..T.......AC.CGAA GGTGACTGTCCTGGGCGCGATGCTCGAATACGG 49524 29 72.4 32 T.CA.........T........AC.CG.. AAGGTCAGGGCATATTTCTGGGCTGCCGTCGG 49463 29 89.7 32 T.CA......................... TAGGCGTGACACCTCGGAGAGACGAGGGCCAT 49402 29 100.0 32 ............................. CCTGCAGGGTATGACGGCCCCGATGCTGGCCC 49341 29 100.0 32 ............................. ACGGCCATCTGGGTGTCCGATAAGAAAGAGGC 49280 29 100.0 33 ............................. AACTTGTGGGCAGGCGCTATCAGCTTTTTCTCG 49218 29 100.0 32 ............................. GCTGCAGCGGCAGGCTGGTCTTCGTCCTGGAT 49157 29 100.0 33 ............................. AACGCCGGCGCCGACCTGGCGCAGTATTGGGTC 49095 28 86.2 34 ......................-AC..G. CGGCATCAACCTCGGGAGTTACGCCGGTTGCCGG 49033 28 72.4 33 T.CA..................-AC..TA CTTTGCTCGCCTGGTAGGCGGACGGTGCGGCGG 48972 29 72.4 32 T.CA..................AC.C.AA TGGCTGGGGGTGTTCTTGCAAAGTGGTGGCGG 48911 29 72.4 32 T.CA..................AC.CG.C TGCAGTTCCCCGGCACCGGAGAATGCGGCCGG 48850 29 72.4 32 T.CA..................AC.CTG. AACACCCGATTCGAGGAAATCGACGATAACGG 48789 29 75.9 32 T.CA..................AC.CG.. GCGACAGCGGCGGTTCCCGACAGTCCGAGCGG 48728 29 72.4 32 T.CA..................AC.CAA. TTGAGCGCCAACGTGCATCATATTCGTGGCGG 48667 28 75.9 33 T.CA..................-AC..G. TCATTCAGATAGGTTTCAACCTTGTTTTCTCGG 48606 29 72.4 31 T.CA..................AC.GT.A CGGATGAACATACGGCTGTATTCAACGGCGG C [48581] 48545 28 75.9 33 T.CA..................-AC..A. TTCCAGGCTGGTCAACTGTTCCCACCACGCCGG 48484 29 75.9 32 T.CA..................AC.C.A. AATGCGAATCATGGCGTCAGCCAGTTCCACGG 48423 29 86.2 29 T.CA..................C...... GCCGAGGCTGAAACGCTGCTCAAGGGCGG A,CAA [48393,48400] 48361 29 89.7 32 T.CA......................... GCCATCACACCGCTGCTGCCGCCGCTCACGAA 48300 29 100.0 33 ............................. TCGTGCCAGAACTCACCGTTCATGTCGCCGTCC 48238 29 100.0 32 ............................. CCGCGGCGCTGGGCCTCGGCGATCATGTCCGG 48177 29 93.1 0 .......................T.C... | ========== ====== ====== ====== ============================= ================================== ================== 30 29 82.3 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : | # Right flank : TCCTGCCCCCGCTTCACCCCGCCCAGCAAGCCTCTGGATCATGCACGCTATTCGATGTGTTCTAAACTCCATCCCCCGCACCTCACATTCTTTCCCATGTTCGCCATCTCAACAAAACCCAAACCATCGGCGGCGCGTGGGTATCTGCTCATCCATTTCTGCGTGGTGCTGTGGGGGTTTACGCCCATCATGGGGCGCTTGATCACGCTGGATGCTGTCACGCTGGTGTGGTGGCGCATGCTGCTGGCGTCGGCTGCCTTGCTGCTGCTGCCCGCCACGTGGCGCGGCATTCGCAAGCTGCCCTGGCGGCTGGTGGCGGCCTGCAGCGGGGCCGGTGTGCTTCTGGCGATCACCTGGGCGCTGTTCTACCTGGCCGTCAAGCTCACCAATGCTTCGGTGGCGGCCATTTGCCTGGGCACCACGCCGCTGTTCATCGCGGTGTTTGGGCCCTTGCTGACGCGCCGGCCCTACCAGCGTTCCAACCTGATGTTGGCTGTGGC # Questionable array : NO Score: 4.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.11, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //