Array 1 7605-9817 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYU01000143.1 Microvirga aerophila strain NBRC 106136 sequence143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7605 29 89.7 32 ..............TA.........A... GGATCCTGATTGGTCACGACGAAGGGCTTCGT 7666 29 96.6 32 ............T................ CCGATCTTCGTCGATGGCGATCTCCTGTACCG 7727 29 86.2 32 ....T.........T.........AA... ATGCCGAAGCACTTCGGCAAGACGATCAAGGT 7788 28 82.8 32 A.......-....G...........A..T GGTGGTGTTCCTATTGGCGGTATCATTTTGTT 7848 29 89.7 29 .......T....G............A... CTCATCAACATCGACTGTCCGTGGCACTT 7907 29 82.8 32 .AGA.T.............A......... GCCTACCGCGTCGGCTACGGCTCGGACACGAT 7968 28 82.8 30 ........-.......T....G..CC... CGCACTTCAAGAGCAAGTATGCCGACCTCG 8026 29 89.7 32 C.G.T........................ AAGTCGGTTCCCGATGATGGCGGTCGTTTCGA T [8035] 8088 29 96.6 32 ....T........................ GACATTCAGCGGGTTAAGACGGCTCTGTTCCG 8149 29 100.0 32 ............................. ATCACCGACGCCCTTCTCCGCTTGACGTGTCA 8210 29 96.6 32 .........................A... CAGACTGGACACAAGCTTGATGACGTGCTGTC 8271 29 86.2 32 ....T...T..............C.A... GTCGAGCTCGGCAAGCTCGGGAACAACGCTGA 8332 29 89.7 32 ....T...........T........A... ACGCCAAAATCGCGCATCGGCTCGGCTTCGCC 8393 29 86.2 32 .A..T..................C.A... GGAGGACCTTTTTTACGTCGCTCCAACCCGGG 8454 29 86.2 32 ....T.......T..A.........A... GATGCGCTCTCGGGCGGCATCTCCACACCCAA 8515 28 89.7 32 ....T................-...A... CTCTCCGAGATCATCGCAATGGTCGCGTTCTT 8575 29 93.1 31 ....T.........A.............. AAGGTCCACGAGCTGGGCCAGATCACCTCGG 8635 29 100.0 31 ............................. GCGATGGTAATCGGCTTGGCTTAGGGAGTCC 8695 29 72.4 32 T.ACT.......G..........T.C..T GACCACAGGAAGCCTATGGGCTCCATGGCGTC 8756 29 93.1 32 ....T...T.................... CAGTAATACGGTTCGATAGGGGCGACGCCCTG 8817 29 93.1 32 ....T....................A... TCGATGCCGATGGTGTTGATGGTCTCGGTATA 8878 29 89.7 32 ..T......A..T................ CTGTATTGGGTCGAGCGATACAGCCCGAGAGA 8939 29 93.1 32 ............T............A... TGGGATTTCTTCACCTACGCGCGCCGCATCGA 9000 29 93.1 32 ....T.................C...... GCCCGTGAGTGCCCTTCCTCGGCTCAGATGGC 9061 29 93.1 32 .......................A.A... ATCGAGATGGCACGGCGAACCCAGGCGTTCGC 9122 28 96.6 31 ........-.................... CCCTATGACAACCTCTTCTGGACCGAAGCGG 9181 29 75.9 32 A.GCT........G.........A.A... GGCGCCATGGGCGGTTGGGACAAAATGCGCCA 9242 29 89.7 32 ....T.......T............A... GTCCACAACATCAAGTCCAAAGAGGGCGTGGA 9303 28 93.1 32 ..............-..........A... GTGCAAGGATGGCGTCTGCCACATCGTTGTTG 9363 29 96.6 32 .........................A... TTGATCATCTGGTTGTTGCGGTTGCCGGATGC 9424 29 93.1 32 ......................C..A... GACCTAGGCGAATATCAAGAGGCGGCGATTGT 9485 29 100.0 32 ............................. TACGCCCAGCTCCTGGCCAACCTGCGCACGCA 9546 29 86.2 32 ..A.....T................A..A GCCTCACCTACGTCGCGCCCTATCGCCGTGCC 9607 29 93.1 32 ....T....................A... TCGCCTACGTTGACGCGGGCCGGAACATCGTC 9668 29 96.6 32 ............T................ TGGGGCAACGAGGCGACTGCAGGCATGCGCGT 9729 28 93.1 32 ........-................A... GGCCTTGAGACTGATGAGCCAGAGGGGGTGAT 9789 29 93.1 0 ........................AA... | ========== ====== ====== ====== ============================= ================================ ================== 37 29 90.8 32 GGCTCCCCCGCCCACGCGGGGATGGTCCC # Left flank : TTGCGTCCGACTTTGCGACGCGATCGCGATGGCGACCGCACCCGCACTGCTGAAGTTGACGTCTATGTGGCGGCGCGCGAAGCAGCGAAGGAAGGGCCGGCACCAGATCGGGGCGAGGTCTATCGCGCCTGGCTTGAGGCCAAGCTCGCGGCCGGAGGCGCGCGGTTGGAAGTCGCGCGCGCCGTTGAAATGCGCCAAGTGCCCCTGCTCCGCCGCGATCGCGATCGGCGACTCACGCGGGTCGAGGGGCATAGCGCCATCTTCGTAGGCACGCTTACGACGCAGGATGCACAAGCCTTCAATGCGCTCCTGGCTCGTGGAGTGGGACGCCATCGTGCCTTCGGCTATGGCATGCTTCTCCTCAGGCCACCGGAGGCTTGAGACTGCATCGAGACATCACGGTTCTGCGCGGCATTAAGGGCGCATCTCCGTTTGGTAAGCGAGTGCTATAAAGTTCGTTTTTTGACATCGTGAGATCGGCCAGTCACTTAAAGCCTAGA # Right flank : CAGCCGCGAAGAGCCCCGTCACATACCCCACTCGACAAGGGCAGCTTCAGCAGCAACACGGTCTCCATCGATCCGATAGATAGTTTGACGTGAGAGTCCGGTCGCCTTAGCGACGGTGCTGATGCCAGTTTCCTGGTTGAGCATGTCGCGGACCATCTCGAACTGTTCACGGTTGTAGCTGGGTTTCCGGCCCAGATACTGGCCCTTGGCCTTGGCATATTGGATCCCAGCTTTTTGGGTCTCCTTGGTCGCCTCGGCCTGGGCCTGGGACATTGCTGCCATGAAGCCGATCAGCGCGTCACGGATGGCCATCTGCATCGGGTCCTTGGTCGCGCCGTCGAACACCATGCTGTTGATCACGGTCTTGATGACGACGCCCCGGCGCATGAACTCGCGGATGGCATCGGCGATGTCGTCATACTGACGGCCCAGCCGATCCACCCAACGGACGACGAGAACGTCACCGGCCCGCAGCAGATCGAACAGACGACGGCCCTCCG # Questionable array : NO Score: 4.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.11, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCCCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //